Wall clock time and date at job start Mon Mar 30 2020 04:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47357 * 131.02643 * 3 2 1 5 5 C 1.36943 * 119.99773 * 268.66669 * 4 3 2 6 6 H 1.07999 * 119.99402 * 322.05304 * 5 4 3 7 7 C 1.38812 * 120.00097 * 142.06294 * 5 4 3 8 8 N 1.31611 * 119.99921 * 156.98985 * 7 5 4 9 9 Si 1.86801 * 119.99917 * 336.98814 * 7 5 4 10 10 H 1.48492 * 109.47296 * 95.69736 * 9 7 5 11 11 H 1.48500 * 109.47106 * 215.69949 * 9 7 5 12 12 H 1.48505 * 109.47079 * 335.69586 * 9 7 5 13 13 C 1.46499 * 120.00028 * 88.65978 * 4 3 2 14 14 C 1.50703 * 109.47055 * 90.00614 * 13 4 3 15 15 N 1.28623 * 124.71090 * 89.99647 * 14 13 4 16 16 C 1.33598 * 115.76759 * 179.97438 * 15 14 13 17 17 C 1.47115 * 123.15325 * 180.02562 * 16 15 14 18 18 O 1.21558 * 119.99775 * 180.02562 * 17 16 15 19 19 O 1.34798 * 120.00248 * 359.97438 * 17 16 15 20 20 C 1.35290 * 113.68960 * 0.26665 * 16 15 14 21 21 S 1.70761 * 124.70527 * 269.97258 * 14 13 4 22 22 H 1.08993 * 109.47403 * 11.02093 * 3 2 1 23 23 H 1.09007 * 109.47180 * 251.02506 * 3 2 1 24 24 H 0.97004 * 119.99758 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.47113 * 330.00143 * 13 4 3 26 26 H 1.09004 * 109.47209 * 210.00044 * 13 4 3 27 27 H 0.96695 * 117.00140 * 180.02562 * 19 17 16 28 28 H 1.08008 * 125.58546 * 179.73012 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9075 -1.0420 5 6 3.3504 0.4308 -2.3003 6 1 3.7884 -0.5481 -2.4285 7 6 3.0457 1.2058 -3.4109 8 7 3.6665 0.9936 -4.5518 9 14 1.7544 2.5498 -3.2860 10 1 2.4184 3.8511 -3.0200 11 1 0.9995 2.6311 -4.5623 12 1 0.8186 2.2357 -2.1766 13 6 3.3115 2.3242 -0.7378 14 6 4.7248 2.5249 -0.2547 15 7 5.7285 2.7878 -1.0150 16 6 6.9038 2.9315 -0.3963 17 6 8.1556 3.2342 -1.1074 18 8 9.1939 3.3526 -0.4865 19 8 8.1514 3.3791 -2.4476 20 6 6.8357 2.7676 0.9449 21 16 5.2160 2.4354 1.3784 22 1 2.9718 -1.0078 -0.1964 23 1 2.9712 0.3350 0.9719 24 1 3.4533 1.5349 -5.3280 25 1 2.6140 2.6395 0.0381 26 1 3.1473 2.9180 -1.6371 27 1 8.9982 3.5771 -2.8704 28 1 7.6681 2.8373 1.6297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378772079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:58 Heat of formation + Delta-G solvation = 15.345319 kcal Electronic energy + Delta-G solvation = -17524.981076 eV Core-core repulsion = 14476.489157 eV Total energy + Delta-G solvation = -3048.491918 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.37943 -38.85286 -36.91728 -35.93419 -35.18051 -32.01254 -31.02741 -28.18766 -26.81888 -25.78053 -22.66404 -21.46646 -19.75546 -18.89217 -17.55279 -17.13875 -16.82794 -16.09710 -15.73369 -15.43882 -15.07264 -14.41204 -13.82635 -13.66565 -13.27382 -13.13685 -12.66189 -12.40658 -12.19086 -12.04597 -11.79658 -11.39998 -11.31490 -10.87510 -10.72370 -10.68001 -10.33626 -9.89838 -9.41990 -9.34258 -8.79855 -8.73076 -7.45432 -6.21742 -3.71505 0.61820 1.43393 1.80956 2.01726 3.18167 3.23876 3.29361 3.36123 3.39137 3.42686 3.46644 4.32900 4.38113 4.73452 4.78565 5.12196 5.20580 5.34695 5.52734 5.64242 5.72824 6.03185 6.17973 6.19167 6.51469 7.63722 7.78936 8.06728 8.15406 8.23194 8.59178 9.40669 9.64506 10.91213 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.007846 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.208621 B = 3567.959160 C = 4563.846408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.199 3.801 3 C 0.226 3.774 4 N -0.570 5.570 5 C -0.291 4.291 6 H 0.090 0.910 7 C 0.062 3.938 8 N -0.869 5.869 9 Si 0.859 3.141 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.264 1.264 13 C 0.196 3.804 14 C 0.049 3.951 15 N -0.406 5.406 16 C 0.025 3.975 17 C 0.570 3.430 18 O -0.522 6.522 19 O -0.485 6.485 20 C -0.233 4.233 21 S 0.181 5.819 22 H 0.107 0.893 23 H 0.086 0.914 24 H 0.269 0.731 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.409 0.591 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.026 3.936 11.044 13.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.121 4.121 3 C 0.096 3.904 4 N -0.290 5.290 5 C -0.420 4.420 6 H 0.108 0.892 7 C -0.143 4.143 8 N -0.505 5.505 9 Si 0.687 3.313 10 H -0.204 1.204 11 H -0.220 1.220 12 H -0.188 1.188 13 C 0.066 3.934 14 C -0.235 4.235 15 N -0.119 5.119 16 C -0.110 4.110 17 C 0.412 3.588 18 O -0.412 6.412 19 O -0.294 6.294 20 C -0.376 4.376 21 S 0.439 5.561 22 H 0.125 0.875 23 H 0.104 0.896 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.110 0.890 27 H 0.267 0.733 28 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 3.667 3.750 11.506 12.645 hybrid contribution 1.299 1.086 -1.019 1.976 sum 4.967 4.836 10.487 12.571 Atomic orbital electron populations 1.81012 1.14206 1.09678 1.09986 1.31329 0.96919 0.92152 0.91688 1.18902 0.79413 0.98293 0.93796 1.44137 1.71243 1.04067 1.09550 1.18708 1.38696 1.05156 0.79403 0.89248 1.25373 0.96348 0.97554 0.95054 1.69839 1.38378 1.40226 1.02098 0.87212 0.83637 0.82412 0.78002 1.20389 1.21991 1.18819 1.20298 0.84912 0.87863 1.00320 1.29044 1.02301 1.00810 0.91314 1.67031 0.96916 1.12728 1.35271 1.19304 0.92079 1.10021 0.89621 1.19648 0.86775 0.71940 0.80477 1.90891 1.32863 1.48763 1.68723 1.84806 1.41296 1.82183 1.21130 1.26438 1.04046 1.07873 0.99222 1.82749 0.97478 1.62479 1.13366 0.87501 0.89563 0.92090 0.90854 0.88956 0.73310 0.79831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.55 18.54 42.15 0.78 -8.77 15 2 C 0.20 3.58 15.77 -20.76 -0.33 3.25 15 3 C 0.23 3.48 6.14 -6.83 -0.04 3.44 15 4 N -0.57 -11.42 2.01 -177.95 -0.36 -11.77 15 5 C -0.29 -7.22 9.90 -15.06 -0.15 -7.37 15 6 H 0.09 2.38 8.06 -52.49 -0.42 1.95 15 7 C 0.06 1.66 5.29 -17.43 -0.09 1.57 15 8 N -0.87 -24.92 13.97 55.49 0.78 -24.15 15 9 Si 0.86 20.71 25.10 -169.99 -4.27 16.44 15 10 H -0.28 -6.46 6.68 56.52 0.38 -6.08 15 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 15 12 H -0.26 -6.32 7.11 56.52 0.40 -5.92 15 13 C 0.20 3.67 5.09 -5.19 -0.03 3.64 15 14 C 0.05 0.86 6.92 -13.62 -0.09 0.77 15 15 N -0.41 -8.08 10.60 -8.53 -0.09 -8.17 15 16 C 0.02 0.42 6.71 -84.55 -0.57 -0.14 15 17 C 0.57 9.51 8.31 34.33 0.29 9.80 15 18 O -0.52 -8.92 17.50 -19.31 -0.34 -9.26 15 19 O -0.49 -7.50 13.37 -40.76 -0.54 -8.04 15 20 C -0.23 -3.23 10.62 29.68 0.32 -2.91 15 21 S 0.18 2.26 22.92 -107.50 -2.46 -0.21 15 22 H 0.11 1.50 8.03 -51.93 -0.42 1.08 15 23 H 0.09 0.99 8.08 -51.92 -0.42 0.57 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.07 1.12 8.07 -51.93 -0.42 0.70 15 26 H 0.09 2.01 3.38 -51.93 -0.18 1.83 15 27 H 0.41 3.84 9.11 45.56 0.42 4.25 15 28 H 0.18 2.10 8.03 -52.48 -0.42 1.68 15 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -33.45 280.71 -3.99 -37.44 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -1.02 Total: 0.22 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: -0.70 Total: 12.04 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 1.11 Total: -52.86 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.88 Total: -17.31 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.27 Total: 16.44 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.46 Total: -0.21 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.45 -3.99 -37.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378772079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.788 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds