Wall clock time and date at job start Mon Mar 30 2020 04:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47357 * 131.02643 * 3 2 1 5 5 C 1.36943 * 119.99773 * 268.66669 * 4 3 2 6 6 H 1.07999 * 119.99402 * 322.05304 * 5 4 3 7 7 C 1.38812 * 120.00097 * 142.06294 * 5 4 3 8 8 N 1.31611 * 119.99921 * 156.98985 * 7 5 4 9 9 Si 1.86801 * 119.99917 * 336.98814 * 7 5 4 10 10 H 1.48492 * 109.47296 * 95.69736 * 9 7 5 11 11 H 1.48500 * 109.47106 * 215.69949 * 9 7 5 12 12 H 1.48505 * 109.47079 * 335.69586 * 9 7 5 13 13 C 1.46499 * 120.00028 * 88.65978 * 4 3 2 14 14 C 1.50703 * 109.47055 * 90.00614 * 13 4 3 15 15 N 1.28623 * 124.71090 * 89.99647 * 14 13 4 16 16 C 1.33598 * 115.76759 * 179.97438 * 15 14 13 17 17 C 1.47115 * 123.15325 * 180.02562 * 16 15 14 18 18 O 1.21558 * 119.99775 * 180.02562 * 17 16 15 19 19 O 1.34798 * 120.00248 * 359.97438 * 17 16 15 20 20 C 1.35290 * 113.68960 * 0.26665 * 16 15 14 21 21 S 1.70761 * 124.70527 * 269.97258 * 14 13 4 22 22 H 1.08993 * 109.47403 * 11.02093 * 3 2 1 23 23 H 1.09007 * 109.47180 * 251.02506 * 3 2 1 24 24 H 0.97004 * 119.99758 * 179.97438 * 8 7 5 25 25 H 1.08997 * 109.47113 * 330.00143 * 13 4 3 26 26 H 1.09004 * 109.47209 * 210.00044 * 13 4 3 27 27 H 0.96695 * 117.00140 * 180.02562 * 19 17 16 28 28 H 1.08008 * 125.58546 * 179.73012 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.9075 -1.0420 5 6 3.3504 0.4308 -2.3003 6 1 3.7884 -0.5481 -2.4285 7 6 3.0457 1.2058 -3.4109 8 7 3.6665 0.9936 -4.5518 9 14 1.7544 2.5498 -3.2860 10 1 2.4184 3.8511 -3.0200 11 1 0.9995 2.6311 -4.5623 12 1 0.8186 2.2357 -2.1766 13 6 3.3115 2.3242 -0.7378 14 6 4.7248 2.5249 -0.2547 15 7 5.7285 2.7878 -1.0150 16 6 6.9038 2.9315 -0.3963 17 6 8.1556 3.2342 -1.1074 18 8 9.1939 3.3526 -0.4865 19 8 8.1514 3.3791 -2.4476 20 6 6.8357 2.7676 0.9449 21 16 5.2160 2.4354 1.3784 22 1 2.9718 -1.0078 -0.1964 23 1 2.9712 0.3350 0.9719 24 1 3.4533 1.5349 -5.3280 25 1 2.6140 2.6395 0.0381 26 1 3.1473 2.9180 -1.6371 27 1 8.9982 3.5771 -2.8704 28 1 7.6681 2.8373 1.6297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378772079.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:57 Heat of formation + Delta-G solvation = -10.390238 kcal Electronic energy + Delta-G solvation = -17526.097053 eV Core-core repulsion = 14476.489157 eV Total energy + Delta-G solvation = -3049.607896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.60295 -40.12129 -38.40345 -37.15714 -36.70721 -33.88984 -32.32235 -29.52797 -28.40083 -27.04251 -24.26880 -22.88120 -21.01473 -20.12390 -19.07173 -18.60324 -18.23636 -17.24416 -17.19860 -16.93329 -16.45270 -15.77999 -15.35914 -15.05175 -14.71394 -14.45266 -14.24748 -14.02943 -13.69663 -13.54536 -12.95507 -12.89720 -12.65528 -12.61685 -12.13469 -12.03636 -11.95203 -11.80098 -10.77855 -10.58856 -10.51137 -9.89490 -9.15895 -8.22528 -5.67135 -0.52965 0.34126 0.62028 0.74060 1.27037 1.40570 1.44949 1.86832 2.03905 2.14543 2.21568 2.37743 3.00383 3.21191 3.40874 3.54392 3.98270 4.22607 4.30191 4.40029 4.58830 4.66062 4.89769 4.93627 5.41231 5.85631 6.17273 6.64832 6.76225 6.86626 7.02926 7.49778 7.82244 8.95250 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.007846 C = 0.006134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.208621 B = 3567.959160 C = 4563.846408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.219 3.781 3 C 0.225 3.775 4 N -0.584 5.584 5 C -0.262 4.262 6 H 0.064 0.936 7 C 0.008 3.992 8 N -0.926 5.926 9 Si 0.912 3.088 10 H -0.272 1.272 11 H -0.313 1.313 12 H -0.258 1.258 13 C 0.192 3.808 14 C 0.005 3.995 15 N -0.453 5.453 16 C -0.016 4.016 17 C 0.569 3.431 18 O -0.534 6.534 19 O -0.500 6.500 20 C -0.221 4.221 21 S 0.320 5.680 22 H 0.125 0.875 23 H 0.140 0.860 24 H 0.262 0.738 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.430 0.570 28 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.345 4.194 14.875 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.100 4.100 3 C 0.097 3.903 4 N -0.305 5.305 5 C -0.391 4.391 6 H 0.081 0.919 7 C -0.191 4.191 8 N -0.567 5.567 9 Si 0.742 3.258 10 H -0.199 1.199 11 H -0.241 1.241 12 H -0.182 1.182 13 C 0.063 3.937 14 C -0.278 4.278 15 N -0.168 5.168 16 C -0.150 4.150 17 C 0.412 3.588 18 O -0.426 6.426 19 O -0.312 6.312 20 C -0.364 4.364 21 S 0.579 5.421 22 H 0.143 0.857 23 H 0.157 0.843 24 H 0.072 0.928 25 H 0.130 0.870 26 H 0.074 0.926 27 H 0.291 0.709 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.977 4.022 15.375 16.383 hybrid contribution 1.310 0.991 -1.959 2.556 sum 5.287 5.013 13.417 15.268 Atomic orbital electron populations 1.81045 1.15689 1.11163 1.11464 1.31723 0.97215 0.90783 0.90322 1.19342 0.77682 0.98585 0.94730 1.44161 1.72327 1.05104 1.08889 1.18589 1.35581 1.03556 0.81397 0.91858 1.25868 0.98278 0.99825 0.95150 1.69958 1.41178 1.42588 1.03005 0.86360 0.81621 0.81093 0.76769 1.19882 1.24148 1.18248 1.20196 0.86914 0.86308 1.00278 1.28482 1.01262 1.02899 0.95123 1.66980 0.98236 1.13530 1.38069 1.19432 0.91668 1.12935 0.91006 1.19735 0.86814 0.71623 0.80625 1.90867 1.33122 1.49689 1.68902 1.84774 1.43275 1.82017 1.21123 1.26996 1.06354 1.04599 0.98458 1.82124 0.94457 1.58745 1.06820 0.85744 0.84282 0.92849 0.86952 0.92574 0.70876 0.77110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -19.84 18.54 20.01 0.37 -19.47 15 2 C 0.22 7.20 15.77 89.44 1.41 8.61 15 3 C 0.23 6.03 6.14 84.57 0.52 6.55 15 4 N -0.58 -22.08 2.01 -716.91 -1.44 -23.52 15 5 C -0.26 -12.98 9.90 84.03 0.83 -12.14 15 6 H 0.06 3.43 8.06 -2.91 -0.02 3.41 15 7 C 0.01 0.46 5.29 84.86 0.45 0.91 15 8 N -0.93 -55.62 13.97 21.65 0.30 -55.32 15 9 Si 0.91 44.09 25.10 68.60 1.72 45.82 15 10 H -0.27 -12.67 6.68 99.48 0.66 -12.01 15 11 H -0.31 -15.86 7.11 99.48 0.71 -15.15 15 12 H -0.26 -11.99 7.11 99.48 0.71 -11.28 15 13 C 0.19 6.69 5.09 85.63 0.44 7.13 15 14 C 0.00 0.15 6.92 88.58 0.61 0.76 15 15 N -0.45 -17.54 10.60 -180.91 -1.92 -19.46 15 16 C -0.02 -0.53 6.71 40.53 0.27 -0.26 15 17 C 0.57 18.60 8.31 70.15 0.58 19.18 15 18 O -0.53 -17.59 17.50 19.65 0.34 -17.25 15 19 O -0.50 -15.57 13.37 -57.10 -0.76 -16.33 15 20 C -0.22 -5.21 10.62 67.14 0.71 -4.49 15 21 S 0.32 6.20 22.92 -56.49 -1.29 4.91 15 22 H 0.12 3.00 8.03 -2.39 -0.02 2.98 15 23 H 0.14 2.30 8.08 -2.38 -0.02 2.28 15 24 H 0.26 15.22 8.31 -92.70 -0.77 14.45 15 25 H 0.11 2.94 8.07 -2.39 -0.02 2.92 15 26 H 0.06 2.39 3.38 -2.38 -0.01 2.38 15 27 H 0.43 8.09 9.11 -74.06 -0.67 7.42 15 28 H 0.21 3.74 8.03 -2.91 -0.02 3.72 15 Total: -1.00 -76.91 280.71 3.67 -73.24 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 0.52 Total: 1.12 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 5.83 Total: 26.25 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -2.68 Total: -117.76 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.42 Total: -33.58 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.72 Total: 45.82 kcal Atomic # 16 Polarization: 6.20 SS G_CDS: -1.29 Total: 4.91 kcal Total: -76.91 3.67 -73.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378772079.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.850 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds