Wall clock time and date at job start Mon Mar 30 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42094 * 109.46902 * 2 1 4 4 C 1.81405 * 102.99841 * 243.61168 * 2 1 3 5 5 C 1.53001 * 115.55108 * 294.38292 * 4 2 1 6 6 N 1.46502 * 109.47256 * 270.99108 * 5 4 2 7 7 S 1.65591 * 120.00049 * 165.20350 * 6 5 4 8 8 O 1.42105 * 106.40536 * 311.45339 * 7 6 5 9 9 O 1.42101 * 106.40225 * 178.53803 * 7 6 5 10 10 C 1.76201 * 107.22171 * 64.99544 * 7 6 5 11 11 H 1.07998 * 119.99893 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99811 * 179.72413 * 10 7 6 13 13 N 1.31509 * 120.00088 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99659 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47401 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47243 * 119.99957 * 14 12 10 17 17 H 1.48506 * 109.47089 * 240.00188 * 14 12 10 18 18 C 1.52993 * 117.51684 * 80.08364 * 4 2 1 19 19 C 1.52996 * 117.49793 * 148.71527 * 4 2 1 20 20 H 1.09004 * 109.47084 * 172.09418 * 1 2 3 21 21 H 1.09003 * 109.46994 * 292.09092 * 1 2 3 22 22 H 1.08994 * 109.47560 * 52.08880 * 1 2 3 23 23 H 1.08993 * 109.46986 * 150.98482 * 5 4 2 24 24 H 1.09002 * 109.46790 * 30.98793 * 5 4 2 25 25 H 0.97003 * 119.99710 * 345.19704 * 6 5 4 26 26 H 0.97002 * 119.99934 * 180.02562 * 13 12 10 27 27 H 1.08998 * 117.50044 * 214.96845 * 18 4 2 28 28 H 1.08998 * 117.50121 * 359.97438 * 18 4 2 29 29 H 1.09004 * 117.50045 * 359.97319 * 19 4 2 30 30 H 1.09001 * 117.50006 * 145.00054 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5834 5 6 1.8152 -2.2546 -1.7154 6 7 2.9019 -3.1080 -1.2286 7 16 2.6180 -4.7072 -0.9065 8 8 1.4419 -4.7536 -0.1102 9 8 3.8597 -5.2596 -0.4914 10 6 2.2143 -5.4838 -2.4358 11 1 2.1926 -4.9039 -3.3466 12 6 1.9324 -6.8330 -2.4705 13 7 1.9642 -7.5402 -1.3622 14 14 1.5052 -7.6564 -4.0919 15 1 1.5371 -6.6487 -5.1823 16 1 2.4927 -8.7278 -4.3783 17 1 0.1455 -8.2469 -4.0040 18 6 2.1533 0.0822 -2.8415 19 6 3.5110 -0.3443 -2.2795 20 1 -0.3633 -1.0179 -0.1414 21 1 -0.3633 0.3865 0.9523 22 1 -0.3634 0.6314 -0.8107 23 1 1.6145 -2.4833 -2.7620 24 1 0.9174 -2.4374 -1.1250 25 1 3.7879 -2.7362 -1.0951 26 1 1.7662 -8.4895 -1.3867 27 1 1.8183 -0.3933 -3.7633 28 1 1.8625 1.1254 -2.7181 29 1 4.1136 0.4185 -1.7863 30 1 4.0691 -1.1004 -2.8316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380006953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:27 Heat of formation + Delta-G solvation = -103.320949 kcal Electronic energy + Delta-G solvation = -16774.913369 eV Core-core repulsion = 13824.426895 eV Total energy + Delta-G solvation = -2950.486474 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -37.88440 -35.74376 -35.20475 -33.96105 -33.38473 -32.99506 -28.94934 -26.17948 -26.07195 -22.58185 -21.18833 -19.02254 -17.62761 -17.24323 -16.52574 -16.02851 -15.49168 -14.86248 -14.62223 -14.39327 -14.02986 -13.87741 -13.27630 -13.09028 -12.82036 -12.43407 -12.01845 -11.76913 -11.56165 -11.33028 -11.25914 -11.04038 -10.70242 -10.61279 -10.30480 -10.24227 -10.19951 -9.95949 -9.27833 -9.04672 -8.53442 -8.13854 -6.72467 -5.34013 1.52977 2.29381 2.58723 3.03355 3.12294 3.18468 3.53209 3.74213 4.04903 4.60982 4.64693 4.69079 4.80561 4.97961 5.13458 5.29574 5.50988 5.56227 5.71319 5.78720 5.86699 5.98916 6.02719 6.08364 6.46123 6.80702 7.30157 7.87640 7.96289 8.87533 10.21606 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.005953 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.279579 B = 4702.633291 C = 4925.637649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.488 4.488 2 S 1.280 4.720 3 O -0.858 6.858 4 C -0.456 4.456 5 C 0.189 3.811 6 N -1.135 6.135 7 S 2.715 3.285 8 O -1.005 7.005 9 O -1.004 7.004 10 C -1.022 5.022 11 H 0.101 0.899 12 C 0.133 3.867 13 N -0.844 5.844 14 Si 0.918 3.082 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.271 1.271 18 C -0.151 4.151 19 C -0.127 4.127 20 H 0.120 0.880 21 H 0.106 0.894 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.084 0.916 25 H 0.404 0.596 26 H 0.290 0.710 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 10.605 -0.835 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 1.477 4.523 3 O -0.853 6.853 4 C -0.555 4.555 5 C 0.061 3.939 6 N -0.890 5.890 7 S 2.815 3.185 8 O -0.995 6.995 9 O -0.995 6.995 10 C -1.155 5.155 11 H 0.119 0.881 12 C -0.085 4.085 13 N -0.474 5.474 14 Si 0.742 3.258 15 H -0.188 1.188 16 H -0.196 1.196 17 H -0.196 1.196 18 C -0.190 4.190 19 C -0.165 4.165 20 H 0.138 0.862 21 H 0.125 0.875 22 H 0.099 0.901 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.235 0.765 26 H 0.101 0.899 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.047 10.340 0.818 10.425 hybrid contribution -0.882 0.752 -3.267 3.466 sum -1.929 11.092 -2.448 11.522 Atomic orbital electron populations 1.27607 1.21192 1.08720 1.07065 1.70801 0.86757 0.97232 0.97477 1.93024 1.74093 1.37307 1.80917 1.29450 1.10378 1.04071 1.11595 1.20186 0.90139 0.83609 0.99992 1.56042 1.17763 1.29819 1.85406 1.00411 0.72983 0.69389 0.75728 1.93357 1.50401 1.85215 1.70487 1.93384 1.46521 1.75581 1.83977 1.30598 1.63431 1.04544 1.16931 0.88052 1.24722 0.89333 0.96026 0.98373 1.69894 1.39708 1.09980 1.27802 0.86167 0.78701 0.79250 0.81636 1.18753 1.19641 1.19632 1.22967 1.01485 0.98674 0.95877 1.22768 0.89520 1.02759 1.01449 0.86164 0.87534 0.90100 0.91622 0.89791 0.76454 0.89935 0.87752 0.88760 0.88083 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -5.05 10.64 101.05 1.07 -3.98 16 2 S 1.28 15.10 13.75 -107.50 -1.48 13.62 16 3 O -0.86 -14.12 17.88 -35.23 -0.63 -14.75 16 4 C -0.46 -5.70 2.14 -90.63 -0.19 -5.89 16 5 C 0.19 2.78 6.24 -4.04 -0.03 2.76 16 6 N -1.14 -19.71 5.94 -10.61 -0.06 -19.78 16 7 S 2.72 66.16 5.02 -107.50 -0.54 65.62 16 8 O -1.00 -26.61 17.49 -57.17 -1.00 -27.61 16 9 O -1.00 -27.65 18.02 -57.17 -1.03 -28.68 16 10 C -1.02 -26.56 9.72 30.60 0.30 -26.26 16 11 H 0.10 2.41 7.81 -52.49 -0.41 2.00 16 12 C 0.13 3.58 5.46 -17.82 -0.10 3.48 16 13 N -0.84 -23.94 13.19 55.43 0.73 -23.21 16 14 Si 0.92 19.91 29.54 -169.99 -5.02 14.88 16 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 16 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 C -0.15 -1.77 9.87 -26.73 -0.26 -2.04 16 19 C -0.13 -1.51 9.26 -26.73 -0.25 -1.75 16 20 H 0.12 1.15 7.23 -51.92 -0.38 0.77 16 21 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 22 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.07 0.95 7.88 -51.93 -0.41 0.54 16 24 H 0.08 1.19 6.67 -51.93 -0.35 0.84 16 25 H 0.40 6.01 8.15 -34.47 -0.28 5.73 16 26 H 0.29 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.10 1.12 8.04 -51.93 -0.42 0.70 16 28 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.10 1.20 8.12 -51.93 -0.42 0.78 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -36.38 290.26 -7.60 -43.98 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -3.49 Total: 5.23 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 0.54 Total: -33.68 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.67 Total: -42.99 kcal Atomic # 8 Polarization: -68.38 SS G_CDS: -2.66 Total: -71.04 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 81.26 SS G_CDS: -2.02 Total: 79.24 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -36.38 -7.60 -43.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380006953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.338 kcal (2) G-P(sol) polarization free energy of solvation -36.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds