Wall clock time and date at job start Mon Mar 30 2020 04:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42094 * 109.46902 * 2 1 4 4 C 1.81405 * 102.99841 * 243.61168 * 2 1 3 5 5 C 1.53001 * 115.55108 * 294.38292 * 4 2 1 6 6 N 1.46502 * 109.47256 * 270.99108 * 5 4 2 7 7 S 1.65591 * 120.00049 * 165.20350 * 6 5 4 8 8 O 1.42105 * 106.40536 * 311.45339 * 7 6 5 9 9 O 1.42101 * 106.40225 * 178.53803 * 7 6 5 10 10 C 1.76201 * 107.22171 * 64.99544 * 7 6 5 11 11 H 1.07998 * 119.99893 * 0.02562 * 10 7 6 12 12 C 1.37882 * 119.99811 * 179.72413 * 10 7 6 13 13 N 1.31509 * 120.00088 * 0.02562 * 12 10 7 14 14 Si 1.86794 * 119.99659 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47401 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47243 * 119.99957 * 14 12 10 17 17 H 1.48506 * 109.47089 * 240.00188 * 14 12 10 18 18 C 1.52993 * 117.51684 * 80.08364 * 4 2 1 19 19 C 1.52996 * 117.49793 * 148.71527 * 4 2 1 20 20 H 1.09004 * 109.47084 * 172.09418 * 1 2 3 21 21 H 1.09003 * 109.46994 * 292.09092 * 1 2 3 22 22 H 1.08994 * 109.47560 * 52.08880 * 1 2 3 23 23 H 1.08993 * 109.46986 * 150.98482 * 5 4 2 24 24 H 1.09002 * 109.46790 * 30.98793 * 5 4 2 25 25 H 0.97003 * 119.99710 * 345.19704 * 6 5 4 26 26 H 0.97002 * 119.99934 * 180.02562 * 13 12 10 27 27 H 1.08998 * 117.50044 * 214.96845 * 18 4 2 28 28 H 1.08998 * 117.50121 * 359.97438 * 18 4 2 29 29 H 1.09004 * 117.50045 * 359.97319 * 19 4 2 30 30 H 1.09001 * 117.50006 * 145.00054 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2220 -0.7856 -1.5834 5 6 1.8152 -2.2546 -1.7154 6 7 2.9019 -3.1080 -1.2286 7 16 2.6180 -4.7072 -0.9065 8 8 1.4419 -4.7536 -0.1102 9 8 3.8597 -5.2596 -0.4914 10 6 2.2143 -5.4838 -2.4358 11 1 2.1926 -4.9039 -3.3466 12 6 1.9324 -6.8330 -2.4705 13 7 1.9642 -7.5402 -1.3622 14 14 1.5052 -7.6564 -4.0919 15 1 1.5371 -6.6487 -5.1823 16 1 2.4927 -8.7278 -4.3783 17 1 0.1455 -8.2469 -4.0040 18 6 2.1533 0.0822 -2.8415 19 6 3.5110 -0.3443 -2.2795 20 1 -0.3633 -1.0179 -0.1414 21 1 -0.3633 0.3865 0.9523 22 1 -0.3634 0.6314 -0.8107 23 1 1.6145 -2.4833 -2.7620 24 1 0.9174 -2.4374 -1.1250 25 1 3.7879 -2.7362 -1.0951 26 1 1.7662 -8.4895 -1.3867 27 1 1.8183 -0.3933 -3.7633 28 1 1.8625 1.1254 -2.7181 29 1 4.1136 0.4185 -1.7863 30 1 4.0691 -1.1004 -2.8316 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380006953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:27 Heat of formation + Delta-G solvation = -134.061110 kcal Electronic energy + Delta-G solvation = -16776.246362 eV Core-core repulsion = 13824.426895 eV Total energy + Delta-G solvation = -2951.819467 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.043 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.94926 -37.24676 -36.87024 -35.99332 -35.15231 -34.57675 -29.82108 -28.16487 -27.33861 -23.53167 -22.26336 -20.90662 -19.25774 -18.58038 -17.98854 -17.51271 -16.86521 -16.55740 -15.90885 -15.71552 -15.54865 -15.04087 -14.83732 -14.10108 -14.02165 -13.85451 -13.43158 -13.19585 -12.98795 -12.87087 -12.51378 -12.48240 -12.35926 -12.27799 -12.25118 -11.75979 -11.56145 -11.20567 -11.07986 -10.86752 -10.07834 -9.13579 -8.68354 -7.39024 0.46476 0.57493 1.36703 1.39221 1.54533 1.63865 2.25156 2.53043 2.65400 2.74588 3.19182 3.62917 3.72643 3.85436 3.91223 4.30609 4.45397 4.50993 4.59969 4.61617 4.78071 4.83596 4.88033 5.10034 5.16433 5.21822 5.39493 5.98960 6.52026 6.87643 8.27518 Molecular weight = 267.04amu Principal moments of inertia in cm(-1) A = 0.031514 B = 0.005953 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.279579 B = 4702.633291 C = 4925.637649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.486 4.486 2 S 1.300 4.700 3 O -0.905 6.905 4 C -0.458 4.458 5 C 0.181 3.819 6 N -1.118 6.118 7 S 2.726 3.274 8 O -1.033 7.033 9 O -1.044 7.044 10 C -1.041 5.041 11 H 0.119 0.881 12 C 0.073 3.927 13 N -0.892 5.892 14 Si 0.983 3.017 15 H -0.249 1.249 16 H -0.264 1.264 17 H -0.261 1.261 18 C -0.144 4.144 19 C -0.128 4.128 20 H 0.131 0.869 21 H 0.121 0.879 22 H 0.080 0.920 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.417 0.583 26 H 0.297 0.703 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.188 11.052 -2.420 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 1.500 4.500 3 O -0.901 6.901 4 C -0.557 4.557 5 C 0.054 3.946 6 N -0.878 5.878 7 S 2.826 3.174 8 O -1.022 7.022 9 O -1.034 7.034 10 C -1.174 5.174 11 H 0.137 0.863 12 C -0.140 4.140 13 N -0.524 5.524 14 Si 0.802 3.198 15 H -0.172 1.172 16 H -0.189 1.189 17 H -0.185 1.185 18 C -0.183 4.183 19 C -0.166 4.166 20 H 0.149 0.851 21 H 0.140 0.860 22 H 0.100 0.900 23 H 0.093 0.907 24 H 0.108 0.892 25 H 0.252 0.748 26 H 0.107 0.893 27 H 0.136 0.864 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.721 10.806 -0.758 10.969 hybrid contribution -0.704 0.688 -2.760 2.931 sum -2.426 11.494 -3.518 12.263 Atomic orbital electron populations 1.27580 1.19286 1.09593 1.08067 1.70337 0.87549 0.95465 0.96676 1.92952 1.75941 1.39344 1.81825 1.29258 1.11365 1.02688 1.12391 1.20419 0.89385 0.84300 1.00534 1.55395 1.19348 1.27762 1.85260 0.99743 0.71753 0.70570 0.75318 1.93313 1.51324 1.86331 1.71263 1.93325 1.47851 1.77602 1.84612 1.31016 1.62920 1.05240 1.18234 0.86259 1.25887 0.88942 0.96998 1.02196 1.69982 1.41294 1.10801 1.30312 0.85194 0.78939 0.78550 0.77079 1.17200 1.18892 1.18534 1.23032 1.01048 0.98383 0.95787 1.22849 0.89564 1.02892 1.01302 0.85074 0.86003 0.90042 0.90739 0.89166 0.74819 0.89260 0.86384 0.88996 0.88178 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -9.05 10.64 113.37 1.21 -7.85 16 2 S 1.30 29.03 13.75 -56.49 -0.78 28.26 16 3 O -0.90 -29.14 17.88 -148.98 -2.66 -31.80 16 4 C -0.46 -10.56 2.14 -10.80 -0.02 -10.58 16 5 C 0.18 4.96 6.24 86.38 0.54 5.50 16 6 N -1.12 -37.39 5.94 -187.49 -1.11 -38.50 16 7 S 2.73 132.34 5.02 -56.49 -0.28 132.06 16 8 O -1.03 -54.84 17.49 -128.00 -2.24 -57.07 16 9 O -1.04 -58.11 18.02 -128.00 -2.31 -60.42 16 10 C -1.04 -53.15 9.72 67.74 0.66 -52.49 16 11 H 0.12 5.43 7.81 -2.91 -0.02 5.41 16 12 C 0.07 3.85 5.46 84.66 0.46 4.31 16 13 N -0.89 -50.94 13.19 21.45 0.28 -50.66 16 14 Si 0.98 39.48 29.54 68.60 2.03 41.50 16 15 H -0.25 -9.29 7.11 99.48 0.71 -8.58 16 16 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 17 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 18 C -0.14 -3.05 9.87 30.59 0.30 -2.74 16 19 C -0.13 -2.80 9.26 30.59 0.28 -2.52 16 20 H 0.13 2.19 7.23 -2.39 -0.02 2.18 16 21 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.07 1.95 7.88 -2.39 -0.02 1.93 16 24 H 0.09 2.38 6.67 -2.39 -0.02 2.36 16 25 H 0.42 11.87 8.15 -96.74 -0.79 11.09 16 26 H 0.30 15.27 8.31 -92.71 -0.77 14.50 16 27 H 0.12 2.18 8.04 -2.39 -0.02 2.16 16 28 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.10 2.24 8.12 -2.38 -0.02 2.22 16 30 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -77.35 290.26 -3.28 -80.62 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.37 Total: 22.38 kcal Atomic # 6 Polarization: -69.80 SS G_CDS: 3.43 Total: -66.37 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -0.83 Total: -89.16 kcal Atomic # 8 Polarization: -142.08 SS G_CDS: -7.21 Total: -149.29 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.50 kcal Atomic # 16 Polarization: 161.38 SS G_CDS: -1.06 Total: 160.32 kcal Total: -77.35 -3.28 -80.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380006953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.438 kcal (2) G-P(sol) polarization free energy of solvation -77.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds