Wall clock time and date at job start Mon Mar 30 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00418 * 2 1 4 4 H 1.48496 * 109.47046 * 269.99741 * 3 2 1 5 5 H 1.48504 * 109.47005 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00004 * 3 2 1 7 7 C 1.37882 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99774 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00188 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40566 * 66.45518 * 9 7 2 11 11 O 1.42103 * 106.39781 * 293.53627 * 9 7 2 12 12 N 1.65602 * 107.21678 * 180.02562 * 9 7 2 13 13 N 1.39863 * 125.46077 * 269.68373 * 12 9 7 14 14 C 1.30233 * 110.09106 * 180.26518 * 13 12 9 15 15 C 1.45965 * 107.80572 * 0.02562 * 14 13 12 16 16 C 1.39998 * 133.85189 * 180.02562 * 15 14 13 17 17 C 1.36291 * 119.88116 * 179.97438 * 16 15 14 18 18 C 1.39631 * 120.56440 * 359.97438 * 17 16 15 19 19 N 1.39658 * 119.75148 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.49845 * 0.02562 * 18 17 16 21 21 C 1.37075 * 125.46961 * 90.00010 * 12 9 7 22 22 H 0.97004 * 119.99143 * 0.02562 * 1 2 3 23 23 H 1.08009 * 126.09186 * 179.97438 * 14 13 12 24 24 H 1.08006 * 120.05982 * 359.97438 * 16 15 14 25 25 H 1.07996 * 119.71583 * 180.02562 * 17 16 15 26 26 H 0.97009 * 119.99906 * 0.02562 * 19 18 17 27 27 H 0.97001 * 120.00476 * 179.97438 * 19 18 17 28 28 H 1.08003 * 120.15570 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 16 3.7665 -1.1943 0.0012 10 8 4.1674 -0.6495 1.2509 11 8 4.1682 -0.6502 -1.2486 12 7 4.2565 -2.7761 0.0011 13 7 4.5022 -3.5496 1.1402 14 6 4.8775 -4.7479 0.7948 15 6 4.8933 -4.8078 -0.6635 16 6 5.2055 -5.8101 -1.5897 17 6 5.1209 -5.5508 -2.9251 18 6 4.7244 -4.2917 -3.3802 19 7 4.6441 -4.0445 -4.7524 20 6 4.4116 -3.2876 -2.4827 21 6 4.4923 -3.5356 -1.1154 22 1 -0.4849 0.8402 -0.0004 23 1 5.1325 -5.5534 1.4677 24 1 5.5127 -6.7871 -1.2467 25 1 5.3619 -6.3261 -3.6372 26 1 4.8631 -4.7462 -5.3853 27 1 4.3687 -3.1712 -5.0726 28 1 4.1051 -2.3159 -2.8408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397000627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:54 Heat of formation + Delta-G solvation = 9.301222 kcal Electronic energy + Delta-G solvation = -18088.552330 eV Core-core repulsion = 15039.798320 eV Total energy + Delta-G solvation = -3048.754010 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87118 -37.66156 -35.97085 -34.74021 -33.62792 -33.17226 -32.02544 -29.31512 -27.92297 -26.57647 -22.90543 -22.16564 -21.48135 -19.05068 -18.11737 -17.23462 -16.93071 -16.43341 -15.76940 -15.25356 -14.67761 -14.56817 -14.16041 -13.66909 -13.48571 -13.35848 -12.98153 -12.49281 -12.36929 -12.02269 -11.54852 -11.20044 -10.91132 -10.76409 -10.62772 -10.53169 -10.37962 -9.99221 -9.93323 -9.32720 -9.20483 -8.03922 -7.35838 -6.92122 -5.49979 1.29329 1.40213 1.73645 2.80456 2.98124 3.07730 3.15979 3.52751 3.84093 3.97790 4.04739 4.39766 4.65602 4.81687 5.04356 5.12246 5.27349 5.42714 5.60869 5.72972 6.05100 6.30323 6.36476 6.51685 6.63199 6.79783 6.95996 7.35396 7.52385 7.76266 7.82539 8.09103 8.54283 10.19825 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.007916 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.699942 B = 3536.242588 C = 4060.171496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.155 3.845 3 Si 0.799 3.201 4 H -0.242 1.242 5 H -0.249 1.249 6 H -0.221 1.221 7 C -1.004 5.004 8 H 0.126 0.874 9 S 2.667 3.333 10 O -0.968 6.968 11 O -0.981 6.981 12 N -0.737 5.737 13 N -0.224 5.224 14 C 0.098 3.902 15 C -0.218 4.218 16 C -0.006 4.006 17 C -0.215 4.215 18 C 0.255 3.745 19 N -0.872 5.872 20 C -0.216 4.216 21 C 0.184 3.816 22 H 0.284 0.716 23 H 0.199 0.801 24 H 0.129 0.871 25 H 0.124 0.876 26 H 0.398 0.602 27 H 0.402 0.598 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.412 -10.685 -6.886 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.065 4.065 3 Si 0.618 3.382 4 H -0.166 1.166 5 H -0.172 1.172 6 H -0.143 1.143 7 C -1.139 5.139 8 H 0.144 0.856 9 S 2.771 3.229 10 O -0.958 6.958 11 O -0.971 6.971 12 N -0.630 5.630 13 N -0.035 5.035 14 C -0.104 4.104 15 C -0.228 4.228 16 C -0.027 4.027 17 C -0.238 4.238 18 C 0.147 3.853 19 N -0.411 5.411 20 C -0.244 4.244 21 C 0.072 3.928 22 H 0.095 0.905 23 H 0.215 0.785 24 H 0.147 0.853 25 H 0.142 0.858 26 H 0.226 0.774 27 H 0.231 0.769 28 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.556 -8.919 -5.882 13.688 hybrid contribution -0.422 0.064 -1.012 1.099 sum 8.133 -8.854 -6.894 13.859 Atomic orbital electron populations 1.69967 1.06422 1.29338 1.38394 1.24378 0.94879 0.98643 0.88650 0.87894 0.83671 0.84474 0.82112 1.16601 1.17219 1.14273 1.30086 1.13490 1.02799 1.67565 0.85645 1.02287 0.78226 0.68449 0.73939 1.93504 1.85297 1.72739 1.44240 1.93453 1.85786 1.72746 1.45085 1.58487 1.67839 1.30224 1.06458 1.76737 1.15690 1.03920 1.07189 1.25265 0.96934 0.95176 0.93035 1.20021 1.14501 0.95025 0.93236 1.20027 0.94295 0.97111 0.91311 1.20153 1.11694 0.96036 0.95907 1.17417 0.91295 0.92429 0.84188 1.42467 1.77951 1.17527 1.03172 1.19805 1.14312 1.01629 0.88646 1.18321 0.94615 0.91097 0.88772 0.90515 0.78468 0.85291 0.85791 0.77421 0.76941 0.83410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -23.48 13.96 55.43 0.77 -22.70 15 2 C 0.16 4.51 5.47 -17.82 -0.10 4.41 15 3 Si 0.80 20.40 26.54 -169.99 -4.51 15.89 15 4 H -0.24 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.25 -5.76 7.11 56.52 0.40 -5.36 15 6 H -0.22 -5.78 5.61 56.52 0.32 -5.46 15 7 C -1.00 -29.18 10.29 30.60 0.31 -28.87 15 8 H 0.13 3.75 8.06 -52.49 -0.42 3.33 15 9 S 2.67 71.85 4.48 -107.50 -0.48 71.37 15 10 O -0.97 -27.91 15.87 -57.17 -0.91 -28.82 15 11 O -0.98 -26.27 14.61 -57.17 -0.84 -27.10 15 12 N -0.74 -17.36 4.04 32.35 0.13 -17.22 15 13 N -0.22 -4.79 12.27 31.88 0.39 -4.40 15 14 C 0.10 1.58 12.28 -15.14 -0.19 1.40 15 15 C -0.22 -3.65 6.36 -105.16 -0.67 -4.32 15 16 C -0.01 -0.08 10.05 -39.62 -0.40 -0.47 15 17 C -0.22 -2.63 9.80 -39.76 -0.39 -3.02 15 18 C 0.25 3.66 6.74 -83.76 -0.56 3.09 15 19 N -0.87 -9.17 9.08 32.42 0.29 -8.87 15 20 C -0.22 -4.06 9.38 -39.22 -0.37 -4.43 15 21 C 0.18 3.78 6.75 -84.19 -0.57 3.21 15 22 H 0.28 7.35 8.31 -40.82 -0.34 7.02 15 23 H 0.20 2.02 8.06 -52.48 -0.42 1.60 15 24 H 0.13 1.12 8.06 -52.48 -0.42 0.70 15 25 H 0.12 1.09 8.06 -52.49 -0.42 0.67 15 26 H 0.40 2.92 8.84 -40.82 -0.36 2.56 15 27 H 0.40 3.99 8.83 -40.82 -0.36 3.63 15 28 H 0.15 2.96 6.65 -52.48 -0.35 2.61 15 LS Contribution 262.64 15.07 3.96 3.96 Total: -1.00 -35.03 262.64 -6.09 -41.13 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -1.98 Total: 5.77 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -2.93 Total: -28.99 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 1.59 Total: -53.20 kcal Atomic # 8 Polarization: -54.18 SS G_CDS: -1.74 Total: -55.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.51 Total: 15.89 kcal Atomic # 16 Polarization: 71.85 SS G_CDS: -0.48 Total: 71.37 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.03 -6.09 -41.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397000627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.430 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds