Wall clock time and date at job start Mon Mar 30 2020 04:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00418 * 2 1 4 4 H 1.48496 * 109.47046 * 269.99741 * 3 2 1 5 5 H 1.48504 * 109.47005 * 29.99743 * 3 2 1 6 6 H 1.48497 * 109.47086 * 150.00004 * 3 2 1 7 7 C 1.37882 * 119.99747 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99774 * 359.97438 * 7 2 1 9 9 S 1.76198 * 120.00188 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40566 * 66.45518 * 9 7 2 11 11 O 1.42103 * 106.39781 * 293.53627 * 9 7 2 12 12 N 1.65602 * 107.21678 * 180.02562 * 9 7 2 13 13 N 1.39863 * 125.46077 * 269.68373 * 12 9 7 14 14 C 1.30233 * 110.09106 * 180.26518 * 13 12 9 15 15 C 1.45965 * 107.80572 * 0.02562 * 14 13 12 16 16 C 1.39998 * 133.85189 * 180.02562 * 15 14 13 17 17 C 1.36291 * 119.88116 * 179.97438 * 16 15 14 18 18 C 1.39631 * 120.56440 * 359.97438 * 17 16 15 19 19 N 1.39658 * 119.75148 * 179.97438 * 18 17 16 20 20 C 1.38262 * 120.49845 * 0.02562 * 18 17 16 21 21 C 1.37075 * 125.46961 * 90.00010 * 12 9 7 22 22 H 0.97004 * 119.99143 * 0.02562 * 1 2 3 23 23 H 1.08009 * 126.09186 * 179.97438 * 14 13 12 24 24 H 1.08006 * 120.05982 * 359.97438 * 16 15 14 25 25 H 1.07996 * 119.71583 * 180.02562 * 17 16 15 26 26 H 0.97009 * 119.99906 * 0.02562 * 19 18 17 27 27 H 0.97001 * 120.00476 * 179.97438 * 19 18 17 28 28 H 1.08003 * 120.15570 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 16 3.7665 -1.1943 0.0012 10 8 4.1674 -0.6495 1.2509 11 8 4.1682 -0.6502 -1.2486 12 7 4.2565 -2.7761 0.0011 13 7 4.5022 -3.5496 1.1402 14 6 4.8775 -4.7479 0.7948 15 6 4.8933 -4.8078 -0.6635 16 6 5.2055 -5.8101 -1.5897 17 6 5.1209 -5.5508 -2.9251 18 6 4.7244 -4.2917 -3.3802 19 7 4.6441 -4.0445 -4.7524 20 6 4.4116 -3.2876 -2.4827 21 6 4.4923 -3.5356 -1.1154 22 1 -0.4849 0.8402 -0.0004 23 1 5.1325 -5.5534 1.4677 24 1 5.5127 -6.7871 -1.2467 25 1 5.3619 -6.3261 -3.6372 26 1 4.8631 -4.7462 -5.3853 27 1 4.3687 -3.1712 -5.0726 28 1 4.1051 -2.3159 -2.8408 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397000627.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:54 Heat of formation + Delta-G solvation = -20.843348 kcal Electronic energy + Delta-G solvation = -18089.859496 eV Core-core repulsion = 15039.798320 eV Total energy + Delta-G solvation = -3050.061177 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.19976 -38.85693 -38.06393 -36.88216 -35.38305 -34.70504 -33.42088 -30.60255 -29.10995 -28.79838 -24.15031 -23.56591 -22.73496 -20.92524 -19.92458 -19.12943 -18.21557 -17.74629 -17.38382 -16.68867 -16.48363 -16.27288 -15.57775 -15.46908 -15.08097 -14.97838 -14.41752 -13.92266 -13.68956 -13.62096 -13.40676 -13.24274 -13.04389 -12.81187 -12.16967 -11.88145 -11.83458 -11.75597 -11.46699 -11.30803 -11.19994 -9.34974 -9.11905 -8.48734 -7.75113 -0.54186 0.12061 0.50780 0.94900 1.04798 1.10734 1.54769 1.77513 1.79702 2.23981 2.85355 2.89794 3.06966 3.17754 3.52954 3.84903 4.10878 4.23327 4.29607 4.63349 4.65871 5.08423 5.16406 5.25102 5.28159 5.46296 5.59929 5.79232 5.87040 6.30919 6.39072 6.50905 7.01609 8.06525 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.007916 C = 0.006895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.699942 B = 3536.242588 C = 4060.171496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.112 3.888 3 Si 0.825 3.175 4 H -0.226 1.226 5 H -0.204 1.204 6 H -0.236 1.236 7 C -1.032 5.032 8 H 0.099 0.901 9 S 2.697 3.303 10 O -0.998 6.998 11 O -0.992 6.992 12 N -0.763 5.763 13 N -0.292 5.292 14 C 0.133 3.867 15 C -0.234 4.234 16 C 0.017 3.983 17 C -0.208 4.208 18 C 0.270 3.730 19 N -0.854 5.854 20 C -0.266 4.266 21 C 0.139 3.861 22 H 0.298 0.702 23 H 0.259 0.741 24 H 0.185 0.815 25 H 0.174 0.826 26 H 0.418 0.582 27 H 0.404 0.596 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.993 -13.389 -8.230 18.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.107 4.107 3 Si 0.640 3.360 4 H -0.149 1.149 5 H -0.126 1.126 6 H -0.159 1.159 7 C -1.166 5.166 8 H 0.117 0.883 9 S 2.800 3.200 10 O -0.989 6.989 11 O -0.981 6.981 12 N -0.659 5.659 13 N -0.103 5.103 14 C -0.068 4.068 15 C -0.243 4.243 16 C -0.004 4.004 17 C -0.230 4.230 18 C 0.159 3.841 19 N -0.393 5.393 20 C -0.295 4.295 21 C 0.030 3.970 22 H 0.109 0.891 23 H 0.275 0.725 24 H 0.202 0.798 25 H 0.191 0.809 26 H 0.249 0.751 27 H 0.233 0.767 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.100 -11.622 -7.287 17.035 hybrid contribution -0.862 0.601 -0.775 1.306 sum 9.238 -11.021 -8.063 16.487 Atomic orbital electron populations 1.69979 1.07300 1.31114 1.38610 1.25165 0.95851 1.01376 0.88313 0.87497 0.82682 0.82299 0.83488 1.14854 1.12586 1.15858 1.30509 1.15814 1.02147 1.68116 0.88318 1.01030 0.76718 0.69170 0.73039 1.93446 1.85187 1.74835 1.45385 1.93419 1.85378 1.74286 1.45047 1.57824 1.69684 1.29917 1.08455 1.76750 1.20344 1.06245 1.06982 1.26311 0.92133 0.94419 0.93910 1.20391 1.15480 0.94464 0.93988 1.20660 0.91224 0.97940 0.90588 1.20727 1.09707 0.95655 0.96928 1.17646 0.89220 0.92365 0.84898 1.42512 1.76186 1.18424 1.02213 1.19818 1.18274 1.02130 0.89229 1.18915 0.96584 0.92752 0.88742 0.89101 0.72542 0.79806 0.80908 0.75052 0.76668 0.86476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.94 13.96 21.45 0.30 -49.64 15 2 C 0.11 6.70 5.47 84.66 0.46 7.16 15 3 Si 0.83 41.91 26.54 68.60 1.82 43.73 15 4 H -0.23 -10.78 7.11 99.48 0.71 -10.08 15 5 H -0.20 -8.90 7.11 99.48 0.71 -8.20 15 6 H -0.24 -12.58 5.61 99.48 0.56 -12.02 15 7 C -1.03 -63.65 10.29 67.74 0.70 -62.96 15 8 H 0.10 6.39 8.06 -2.91 -0.02 6.37 15 9 S 2.70 153.34 4.48 -56.49 -0.25 153.08 15 10 O -1.00 -60.44 15.87 -128.00 -2.03 -62.47 15 11 O -0.99 -55.99 14.61 -128.00 -1.87 -57.86 15 12 N -0.76 -37.58 4.04 -51.56 -0.21 -37.79 15 13 N -0.29 -12.74 12.27 -53.06 -0.65 -13.39 15 14 C 0.13 4.02 12.28 86.93 1.07 5.08 15 15 C -0.23 -7.28 6.36 -20.22 -0.13 -7.41 15 16 C 0.02 0.34 10.05 22.24 0.22 0.56 15 17 C -0.21 -4.02 9.80 22.15 0.22 -3.80 15 18 C 0.27 7.15 6.74 38.24 0.26 7.41 15 19 N -0.85 -15.74 9.08 -51.33 -0.47 -16.21 15 20 C -0.27 -10.25 9.38 22.51 0.21 -10.04 15 21 C 0.14 5.87 6.75 39.19 0.26 6.14 15 22 H 0.30 15.62 8.31 -92.71 -0.77 14.85 15 23 H 0.26 4.03 8.06 -2.91 -0.02 4.00 15 24 H 0.18 1.72 8.06 -2.91 -0.02 1.69 15 25 H 0.17 1.73 8.06 -2.91 -0.02 1.70 15 26 H 0.42 4.41 8.84 -92.70 -0.82 3.59 15 27 H 0.40 7.52 8.83 -92.71 -0.82 6.70 15 28 H 0.12 5.07 6.65 -2.91 -0.02 5.05 15 Total: -1.00 -84.10 262.64 -0.64 -84.74 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -0.55 Total: 13.67 kcal Atomic # 6 Polarization: -61.13 SS G_CDS: 3.27 Total: -57.85 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -1.03 Total: -117.04 kcal Atomic # 8 Polarization: -116.43 SS G_CDS: -3.90 Total: -120.33 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.82 Total: 43.73 kcal Atomic # 16 Polarization: 153.34 SS G_CDS: -0.25 Total: 153.08 kcal Total: -84.10 -0.64 -84.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397000627.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.897 kcal (2) G-P(sol) polarization free energy of solvation -84.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds