Wall clock time and date at job start Mon Mar 30 2020 05:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.47046 * 2 1 4 4 C 1.53741 * 110.42290 * 237.55352 * 2 1 3 5 5 N 1.46534 * 105.18567 * 241.23351 * 4 2 1 6 6 S 1.65606 * 124.95751 * 179.97438 * 5 4 2 7 7 O 1.42108 * 106.40044 * 23.54324 * 6 5 4 8 8 O 1.42100 * 106.39967 * 156.46005 * 6 5 4 9 9 C 1.76193 * 107.21995 * 270.00513 * 6 5 4 10 10 H 1.08004 * 120.00282 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00004 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00065 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00149 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.46942 * 60.00156 * 13 11 9 15 15 H 1.48505 * 109.47299 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47380 * 300.00207 * 13 11 9 17 17 C 1.39576 * 110.08962 * 0.02562 * 5 4 2 18 18 C 1.39671 * 129.32482 * 180.02562 * 17 5 4 19 19 C 1.37828 * 120.28316 * 179.97438 * 18 17 5 20 20 C 1.38305 * 120.22777 * 359.83172 * 19 18 17 21 21 C 1.38225 * 119.83591 * 0.40963 * 20 19 18 22 22 C 1.38171 * 120.15061 * 359.54566 * 21 20 19 23 23 H 1.08997 * 109.46826 * 299.01756 * 1 2 3 24 24 H 1.09003 * 109.47033 * 59.01242 * 1 2 3 25 25 H 1.09000 * 109.47170 * 179.01795 * 1 2 3 26 26 H 1.09007 * 110.30033 * 122.30715 * 4 2 1 27 27 H 1.08997 * 110.30128 * 0.16449 * 4 2 1 28 28 H 0.97001 * 120.00266 * 180.02562 * 12 11 9 29 29 H 1.08000 * 119.85554 * 359.97438 * 18 17 5 30 30 H 1.07996 * 119.88424 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.07839 * 180.20882 * 20 19 18 32 32 H 1.08002 * 119.92750 * 179.83157 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0665 -0.7730 -1.2159 5 7 2.8382 -1.8847 -0.6539 6 16 3.6342 -3.0325 -1.5436 7 8 3.8913 -2.4489 -2.8135 8 8 4.6575 -3.5515 -0.7052 9 6 2.5021 -4.3534 -1.8231 10 1 1.4984 -4.2971 -1.4284 11 6 2.8980 -5.4595 -2.5448 12 7 4.1204 -5.5284 -3.0251 13 14 1.6980 -6.8603 -2.8406 14 1 0.5166 -6.3516 -3.5828 15 1 2.3633 -7.9220 -3.6378 16 1 1.2600 -7.4205 -1.5370 17 6 2.8037 -1.8358 0.7405 18 6 3.3978 -2.6911 1.6712 19 6 3.2410 -2.4654 3.0218 20 6 2.4967 -1.3877 3.4659 21 6 1.9013 -0.5395 2.5511 22 6 2.0564 -0.7610 1.1961 23 1 -0.3633 0.4985 0.8987 24 1 -0.3633 0.5291 -0.8810 25 1 -0.3633 -1.0275 -0.0176 26 1 2.7105 -0.1316 -1.8176 27 1 1.2405 -1.1520 -1.8175 28 1 4.3988 -6.3064 -3.5332 29 1 3.9826 -3.5330 1.3310 30 1 3.7036 -3.1307 3.7358 31 1 2.3782 -1.2111 4.5247 32 1 1.3175 0.3010 2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398498675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:35 Heat of formation + Delta-G solvation = -64.675664 kcal Electronic energy + Delta-G solvation = -18617.645150 eV Core-core repulsion = 15669.223605 eV Total energy + Delta-G solvation = -2948.421545 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12922 -36.23272 -35.41524 -34.16882 -33.26692 -32.88014 -29.51961 -29.00896 -26.27006 -25.84273 -22.65994 -21.67686 -20.30540 -18.92092 -17.84889 -16.44379 -15.79354 -15.51934 -15.25939 -15.09016 -14.12869 -13.92786 -13.87678 -13.26040 -13.10388 -12.73344 -12.22546 -12.18376 -11.97289 -11.81415 -11.48281 -11.34146 -11.25935 -10.91088 -10.67851 -10.57248 -10.47680 -10.45131 -10.04319 -9.98086 -9.32479 -8.95621 -8.42116 -7.36419 -6.78598 -5.44148 1.76234 1.85920 1.97886 3.04025 3.08063 3.13864 3.95560 4.17092 4.22794 4.53415 4.74900 4.91483 5.20285 5.33404 5.39437 5.46788 5.61853 5.67977 5.75064 5.82377 5.88033 5.99233 6.05887 6.06785 6.33978 6.35127 6.39926 6.73008 6.76872 6.93532 7.09909 7.19737 7.25200 7.57399 7.86597 8.78068 10.14222 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.007536 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.673419 B = 3714.453797 C = 3932.102427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 H 0.089 0.911 4 C 0.118 3.882 5 N -0.943 5.943 6 S 2.708 3.292 7 O -0.991 6.991 8 O -0.987 6.987 9 C -1.016 5.016 10 H 0.104 0.896 11 C 0.134 3.866 12 N -0.844 5.844 13 Si 0.924 3.076 14 H -0.263 1.263 15 H -0.275 1.275 16 H -0.262 1.262 17 C 0.190 3.810 18 C -0.154 4.154 19 C -0.088 4.088 20 C -0.164 4.164 21 C -0.078 4.078 22 C -0.149 4.149 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.294 0.706 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.614 7.944 8.137 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 H 0.107 0.893 4 C -0.007 4.007 5 N -0.761 5.761 6 S 2.811 3.189 7 O -0.981 6.981 8 O -0.977 6.977 9 C -1.150 5.150 10 H 0.122 0.878 11 C -0.085 4.085 12 N -0.474 5.474 13 Si 0.747 3.253 14 H -0.187 1.187 15 H -0.199 1.199 16 H -0.187 1.187 17 C 0.091 3.909 18 C -0.176 4.176 19 C -0.107 4.107 20 C -0.184 4.184 21 C -0.097 4.097 22 C -0.153 4.153 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.167 0.833 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.499 7.898 7.534 12.222 hybrid contribution -1.098 -1.068 -0.209 1.546 sum -6.596 6.830 7.325 11.992 Atomic orbital electron populations 1.21811 0.93607 1.02503 1.01681 1.20640 0.96312 0.98928 0.91346 0.89330 1.21876 0.95489 0.87602 0.95695 1.57067 1.64805 1.41917 1.12283 1.00926 0.73874 0.72546 0.71554 1.93382 1.85094 1.79005 1.40621 1.93350 1.56934 1.78718 1.68696 1.30412 1.15351 1.21190 1.48027 0.87787 1.24759 0.95428 0.98103 0.90198 1.69876 1.17010 1.31198 1.29270 0.86141 0.80506 0.79277 0.79350 1.18739 1.19931 1.18669 1.18165 0.94760 0.94743 0.83243 1.21202 1.02835 1.01490 0.92076 1.20815 0.98017 0.97275 0.94559 1.20844 1.01681 0.97064 0.98801 1.20225 0.99413 0.99174 0.90848 1.20105 1.02895 0.98222 0.94110 0.92360 0.92169 0.92095 0.90184 0.90072 0.89595 0.83259 0.85881 0.86386 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.04 37.16 0.34 -1.30 16 2 C -0.05 -0.76 3.63 -91.13 -0.33 -1.09 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.12 2.08 6.83 -3.64 -0.02 2.05 16 5 N -0.94 -20.56 3.47 -58.12 -0.20 -20.76 16 6 S 2.71 73.01 5.12 -107.50 -0.55 72.46 16 7 O -0.99 -28.92 17.56 -57.17 -1.00 -29.93 16 8 O -0.99 -28.45 15.26 -57.17 -0.87 -29.32 16 9 C -1.02 -28.07 9.75 30.60 0.30 -27.77 16 10 H 0.10 2.67 7.81 -52.48 -0.41 2.26 16 11 C 0.13 3.71 5.46 -17.82 -0.10 3.61 16 12 N -0.84 -24.55 13.19 55.43 0.73 -23.82 16 13 Si 0.92 20.47 29.54 -169.99 -5.02 15.44 16 14 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 17 C 0.19 3.85 6.63 -83.66 -0.55 3.29 16 18 C -0.15 -3.06 9.43 -39.20 -0.37 -3.43 16 19 C -0.09 -1.39 10.02 -39.71 -0.40 -1.79 16 20 C -0.16 -2.27 10.06 -39.56 -0.40 -2.67 16 21 C -0.08 -1.10 10.03 -39.61 -0.40 -1.50 16 22 C -0.15 -2.46 5.55 -104.26 -0.58 -3.04 16 23 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.08 1.34 7.70 -51.93 -0.40 0.94 16 28 H 0.29 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.15 3.29 6.09 -52.49 -0.32 2.98 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 286.69 15.07 4.32 4.32 Total: -1.00 -33.64 286.69 -8.76 -42.40 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -3.65 Total: 2.84 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -2.51 Total: -33.63 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.53 Total: -44.58 kcal Atomic # 8 Polarization: -57.37 SS G_CDS: -1.88 Total: -59.24 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 16 Polarization: 73.01 SS G_CDS: -0.55 Total: 72.46 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.64 -8.76 -42.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398498675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.278 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds