Wall clock time and date at job start Mon Mar 30 2020 05:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 110.47046 * 2 1 4 4 C 1.53741 * 110.42290 * 237.55352 * 2 1 3 5 5 N 1.46534 * 105.18567 * 241.23351 * 4 2 1 6 6 S 1.65606 * 124.95751 * 179.97438 * 5 4 2 7 7 O 1.42108 * 106.40044 * 23.54324 * 6 5 4 8 8 O 1.42100 * 106.39967 * 156.46005 * 6 5 4 9 9 C 1.76193 * 107.21995 * 270.00513 * 6 5 4 10 10 H 1.08004 * 120.00282 * 359.97438 * 9 6 5 11 11 C 1.37876 * 120.00004 * 180.02562 * 9 6 5 12 12 N 1.31514 * 120.00065 * 359.97438 * 11 9 6 13 13 Si 1.86801 * 120.00149 * 179.97438 * 11 9 6 14 14 H 1.48505 * 109.46942 * 60.00156 * 13 11 9 15 15 H 1.48505 * 109.47299 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47380 * 300.00207 * 13 11 9 17 17 C 1.39576 * 110.08962 * 0.02562 * 5 4 2 18 18 C 1.39671 * 129.32482 * 180.02562 * 17 5 4 19 19 C 1.37828 * 120.28316 * 179.97438 * 18 17 5 20 20 C 1.38305 * 120.22777 * 359.83172 * 19 18 17 21 21 C 1.38225 * 119.83591 * 0.40963 * 20 19 18 22 22 C 1.38171 * 120.15061 * 359.54566 * 21 20 19 23 23 H 1.08997 * 109.46826 * 299.01756 * 1 2 3 24 24 H 1.09003 * 109.47033 * 59.01242 * 1 2 3 25 25 H 1.09000 * 109.47170 * 179.01795 * 1 2 3 26 26 H 1.09007 * 110.30033 * 122.30715 * 4 2 1 27 27 H 1.08997 * 110.30128 * 0.16449 * 4 2 1 28 28 H 0.97001 * 120.00266 * 180.02562 * 12 11 9 29 29 H 1.08000 * 119.85554 * 359.97438 * 18 17 5 30 30 H 1.07996 * 119.88424 * 180.02562 * 19 18 17 31 31 H 1.08002 * 120.07839 * 180.20882 * 20 19 18 32 32 H 1.08002 * 119.92750 * 179.83157 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0665 -0.7730 -1.2159 5 7 2.8382 -1.8847 -0.6539 6 16 3.6342 -3.0325 -1.5436 7 8 3.8913 -2.4489 -2.8135 8 8 4.6575 -3.5515 -0.7052 9 6 2.5021 -4.3534 -1.8231 10 1 1.4984 -4.2971 -1.4284 11 6 2.8980 -5.4595 -2.5448 12 7 4.1204 -5.5284 -3.0251 13 14 1.6980 -6.8603 -2.8406 14 1 0.5166 -6.3516 -3.5828 15 1 2.3633 -7.9220 -3.6378 16 1 1.2600 -7.4205 -1.5370 17 6 2.8037 -1.8358 0.7405 18 6 3.3978 -2.6911 1.6712 19 6 3.2410 -2.4654 3.0218 20 6 2.4967 -1.3877 3.4659 21 6 1.9013 -0.5395 2.5511 22 6 2.0564 -0.7610 1.1961 23 1 -0.3633 0.4985 0.8987 24 1 -0.3633 0.5291 -0.8810 25 1 -0.3633 -1.0275 -0.0176 26 1 2.7105 -0.1316 -1.8176 27 1 1.2405 -1.1520 -1.8175 28 1 4.3988 -6.3064 -3.5332 29 1 3.9826 -3.5330 1.3310 30 1 3.7036 -3.1307 3.7358 31 1 2.3782 -1.2111 4.5247 32 1 1.3175 0.3010 2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398498675.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:34 Heat of formation + Delta-G solvation = -88.646385 kcal Electronic energy + Delta-G solvation = -18618.684598 eV Core-core repulsion = 15669.223605 eV Total energy + Delta-G solvation = -2949.460993 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44895 -37.81160 -37.31106 -36.36752 -35.32454 -34.23006 -30.72143 -30.33868 -28.40876 -27.07289 -23.96591 -23.04797 -21.52391 -20.90845 -19.61792 -18.45103 -17.30555 -17.15184 -16.83911 -16.43455 -15.92498 -15.77989 -15.40601 -14.65596 -14.31971 -14.08865 -13.89452 -13.56014 -13.51192 -13.22822 -13.11342 -13.08348 -12.71418 -12.69202 -12.58833 -12.37768 -12.03114 -11.91019 -11.49221 -11.38942 -11.32890 -11.00724 -9.66714 -8.95844 -8.68393 -7.63388 -0.01952 0.51203 0.58554 1.27285 1.30140 1.44019 2.12181 2.46539 2.52496 2.90686 3.50135 3.51731 3.57951 4.02664 4.09428 4.14775 4.26912 4.37860 4.51807 4.64057 4.65935 4.77263 4.88487 4.92817 5.04205 5.13391 5.19332 5.37824 5.43285 5.51384 5.65802 5.70790 5.75251 5.83107 6.24598 6.64367 8.10014 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.022783 B = 0.007536 C = 0.007119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.673419 B = 3714.453797 C = 3932.102427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.044 4.044 3 H 0.118 0.882 4 C 0.101 3.899 5 N -0.950 5.950 6 S 2.715 3.285 7 O -1.028 7.028 8 O -1.022 7.022 9 C -1.038 5.038 10 H 0.115 0.885 11 C 0.072 3.928 12 N -0.891 5.891 13 Si 0.993 3.007 14 H -0.247 1.247 15 H -0.257 1.257 16 H -0.251 1.251 17 C 0.140 3.860 18 C -0.192 4.192 19 C -0.091 4.091 20 C -0.146 4.146 21 C -0.070 4.070 22 C -0.143 4.143 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.303 0.697 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 9.300 10.302 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 H 0.136 0.864 4 C -0.023 4.023 5 N -0.773 5.773 6 S 2.819 3.181 7 O -1.018 7.018 8 O -1.012 7.012 9 C -1.171 5.171 10 H 0.133 0.867 11 C -0.142 4.142 12 N -0.522 5.522 13 Si 0.810 3.190 14 H -0.171 1.171 15 H -0.181 1.181 16 H -0.175 1.175 17 C 0.043 3.957 18 C -0.214 4.214 19 C -0.110 4.110 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.148 4.148 23 H 0.103 0.897 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.298 9.273 9.711 15.784 hybrid contribution -0.210 -1.382 -0.738 1.581 sum -8.508 7.891 8.973 14.669 Atomic orbital electron populations 1.21808 0.91237 1.02038 1.04010 1.20735 0.98062 0.99193 0.88351 0.86437 1.22294 0.95348 0.86960 0.97706 1.56439 1.65491 1.42016 1.13323 1.00277 0.73983 0.72873 0.70953 1.93315 1.85993 1.79730 1.42775 1.93297 1.58926 1.79856 1.69141 1.30743 1.15965 1.22009 1.48430 0.86681 1.26067 0.97476 1.01217 0.89402 1.69964 1.19217 1.32669 1.30303 0.85131 0.78124 0.75656 0.80098 1.17091 1.18069 1.17466 1.18549 0.97708 0.97256 0.82210 1.21186 1.04405 1.01446 0.94342 1.21125 0.98282 0.98616 0.92960 1.21382 0.98989 0.95014 1.01103 1.20771 0.98612 0.99997 0.89410 1.20491 1.01567 0.96824 0.95931 0.89654 0.90269 0.93926 0.90149 0.89805 0.88700 0.87299 0.83703 0.81916 0.82062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.04 71.98 0.65 -2.02 16 2 C -0.04 -1.15 3.63 -11.12 -0.04 -1.19 16 3 H 0.12 2.42 8.14 -2.38 -0.02 2.40 16 4 C 0.10 3.57 6.83 86.62 0.59 4.16 16 5 N -0.95 -43.27 3.47 -337.80 -1.17 -44.45 16 6 S 2.71 155.63 5.12 -56.49 -0.29 155.34 16 7 O -1.03 -63.71 17.56 -128.00 -2.25 -65.96 16 8 O -1.02 -63.58 15.26 -128.00 -1.95 -65.53 16 9 C -1.04 -59.73 9.75 67.73 0.66 -59.07 16 10 H 0.12 6.11 7.81 -2.91 -0.02 6.08 16 11 C 0.07 4.09 5.46 84.65 0.46 4.55 16 12 N -0.89 -53.91 13.19 21.45 0.28 -53.62 16 13 Si 0.99 41.91 29.54 68.60 2.03 43.93 16 14 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 15 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 16 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 17 C 0.14 5.78 6.63 38.34 0.25 6.04 16 18 C -0.19 -7.94 9.43 22.52 0.21 -7.73 16 19 C -0.09 -2.77 10.02 22.19 0.22 -2.55 16 20 C -0.15 -3.40 10.06 22.28 0.22 -3.17 16 21 C -0.07 -1.63 10.03 22.25 0.22 -1.41 16 22 C -0.14 -4.42 5.55 -19.63 -0.11 -4.53 16 23 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.08 2.82 7.70 -2.39 -0.02 2.80 16 28 H 0.30 16.34 8.31 -92.71 -0.77 15.57 16 29 H 0.11 5.29 6.09 -2.91 -0.02 5.27 16 30 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16 31 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -79.33 286.69 1.12 -78.21 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.12 Total: 19.00 kcal Atomic # 6 Polarization: -70.28 SS G_CDS: 3.35 Total: -66.92 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -0.89 Total: -98.07 kcal Atomic # 8 Polarization: -127.29 SS G_CDS: -4.20 Total: -131.49 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.93 kcal Atomic # 16 Polarization: 155.63 SS G_CDS: -0.29 Total: 155.34 kcal Total: -79.33 1.12 -78.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398498675.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.438 kcal (2) G-P(sol) polarization free energy of solvation -79.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds