Wall clock time and date at job start Mon Mar 30 2020 05:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.47004 * 2 1 4 4 C 1.53740 * 110.42186 * 122.44100 * 2 1 3 5 5 N 1.46531 * 105.18744 * 118.76740 * 4 2 1 6 6 S 1.65601 * 124.95870 * 179.97438 * 5 4 2 7 7 O 1.42095 * 106.40501 * 23.55366 * 6 5 4 8 8 O 1.42101 * 106.40210 * 156.47501 * 6 5 4 9 9 C 1.76200 * 107.21954 * 270.01403 * 6 5 4 10 10 H 1.08012 * 119.99796 * 0.02562 * 9 6 5 11 11 C 1.37870 * 120.00558 * 180.02562 * 9 6 5 12 12 N 1.31520 * 119.99900 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00463 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47502 * 119.99940 * 13 11 9 16 16 H 1.48504 * 109.46990 * 239.99826 * 13 11 9 17 17 C 1.39575 * 110.08749 * 359.97438 * 5 4 2 18 18 C 1.39672 * 129.32275 * 180.02562 * 17 5 4 19 19 C 1.37838 * 120.28166 * 179.97438 * 18 17 5 20 20 C 1.38294 * 120.22795 * 359.97438 * 19 18 17 21 21 C 1.38237 * 119.83760 * 359.80477 * 20 19 18 22 22 C 1.38169 * 120.14916 * 0.42397 * 21 20 19 23 23 H 1.09003 * 109.46752 * 180.98668 * 1 2 3 24 24 H 1.08994 * 109.47462 * 300.98709 * 1 2 3 25 25 H 1.09003 * 109.47267 * 60.99495 * 1 2 3 26 26 H 1.09000 * 110.30532 * 359.83505 * 4 2 1 27 27 H 1.09005 * 110.38563 * 237.73846 * 4 2 1 28 28 H 0.96994 * 120.00145 * 179.97438 * 12 11 9 29 29 H 1.08002 * 119.85853 * 359.97438 * 18 17 5 30 30 H 1.07999 * 119.88085 * 180.02562 * 19 18 17 31 31 H 1.08003 * 120.07918 * 180.02562 * 20 19 18 32 32 H 1.07993 * 119.92438 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0664 -0.7729 1.2159 5 7 2.8382 -1.8846 0.6542 6 16 3.6351 -3.0317 1.5439 7 8 2.9982 -3.0686 2.8136 8 8 3.7639 -4.1718 0.7056 9 6 5.2684 -2.4328 1.8239 10 1 5.5663 -1.4722 1.4299 11 6 6.1661 -3.1903 2.5457 12 7 5.8033 -4.3597 3.0259 13 14 7.8975 -2.5551 2.8431 14 1 8.0529 -1.2239 2.2036 15 1 8.1363 -2.4340 4.3038 16 1 8.8797 -3.5027 2.2579 17 6 2.8036 -1.8358 -0.7403 18 6 3.3970 -2.6918 -1.6708 19 6 3.2395 -2.4667 -3.0216 20 6 2.4920 -1.3913 -3.4657 21 6 1.8977 -0.5422 -2.5510 22 6 2.0566 -0.7609 -1.1960 23 1 -0.3633 -1.0276 0.0177 24 1 -0.3634 0.5290 0.8809 25 1 -0.3634 0.4983 -0.8988 26 1 1.2404 -1.1519 1.8177 27 1 2.7100 -0.1325 1.8191 28 1 6.4350 -4.8928 3.5334 29 1 3.9817 -3.5337 -1.3306 30 1 3.7009 -3.1330 -3.7355 31 1 2.3698 -1.2175 -4.5246 32 1 1.3140 0.2982 -2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398498676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:36 Heat of formation + Delta-G solvation = -64.671371 kcal Electronic energy + Delta-G solvation = -18594.596174 eV Core-core repulsion = 15646.174815 eV Total energy + Delta-G solvation = -2948.421359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.12973 -36.23320 -35.41656 -34.16998 -33.26427 -32.89213 -29.52170 -29.00914 -26.25785 -25.86516 -22.66068 -21.68034 -20.31531 -18.91804 -17.81260 -16.48434 -15.79340 -15.63739 -15.23930 -14.95625 -14.18376 -13.93987 -13.83718 -13.24832 -13.14302 -12.75834 -12.22494 -12.14730 -12.00193 -11.83256 -11.51573 -11.29311 -11.27982 -10.91129 -10.64135 -10.58418 -10.47961 -10.45562 -10.02099 -10.00308 -9.34797 -8.93908 -8.42020 -7.36408 -6.79079 -5.44246 1.76225 1.85993 1.97894 3.00579 3.08726 3.16747 3.95478 4.17169 4.22867 4.52942 4.74702 4.91365 5.19740 5.32518 5.39224 5.46463 5.64432 5.68608 5.69865 5.81992 5.90064 5.96808 6.05446 6.06513 6.33196 6.35070 6.39088 6.72988 6.76892 6.93528 7.09985 7.19744 7.25059 7.57404 7.87467 8.78161 10.13732 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.007493 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.053164 B = 3736.023662 C = 4131.476029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 H 0.090 0.910 4 C 0.118 3.882 5 N -0.943 5.943 6 S 2.708 3.292 7 O -0.991 6.991 8 O -0.987 6.987 9 C -1.015 5.015 10 H 0.105 0.895 11 C 0.133 3.867 12 N -0.844 5.844 13 Si 0.924 3.076 14 H -0.261 1.261 15 H -0.269 1.269 16 H -0.269 1.269 17 C 0.190 3.810 18 C -0.155 4.155 19 C -0.088 4.088 20 C -0.164 4.164 21 C -0.078 4.078 22 C -0.148 4.148 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.293 0.707 29 H 0.150 0.850 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.855 8.475 -8.132 13.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 H 0.108 0.892 4 C -0.007 4.007 5 N -0.761 5.761 6 S 2.811 3.189 7 O -0.981 6.981 8 O -0.977 6.977 9 C -1.149 5.149 10 H 0.123 0.877 11 C -0.085 4.085 12 N -0.474 5.474 13 Si 0.747 3.253 14 H -0.185 1.185 15 H -0.194 1.194 16 H -0.194 1.194 17 C 0.091 3.909 18 C -0.176 4.176 19 C -0.107 4.107 20 C -0.184 4.184 21 C -0.097 4.097 22 C -0.153 4.153 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.099 0.901 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.167 0.833 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.207 7.417 -7.531 12.258 hybrid contribution 1.424 0.665 0.217 1.587 sum -4.783 8.082 -7.314 11.904 Atomic orbital electron populations 1.21809 0.93689 1.02346 1.01738 1.20636 0.96199 0.99066 0.91348 0.89212 1.21872 0.95585 0.87519 0.95687 1.57064 1.63137 1.43587 1.12287 1.00944 0.75274 0.71173 0.71556 1.93379 1.78366 1.85723 1.40632 1.93350 1.88002 1.47660 1.68695 1.30474 1.20127 1.16409 1.47902 0.87686 1.24769 1.00823 0.92751 0.90188 1.69893 1.37960 1.10110 1.29388 0.86070 0.80421 0.79943 0.78827 1.18485 1.19433 1.19394 1.18166 0.94824 0.94678 0.83243 1.21205 1.03064 1.01266 0.92076 1.20816 0.98052 0.97242 0.94556 1.20845 1.01666 0.97079 0.98800 1.20225 0.99435 0.99155 0.90846 1.20103 1.02981 0.98131 0.94109 0.92296 0.92135 0.92309 0.90060 0.90202 0.89705 0.83256 0.85879 0.86385 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.04 37.16 0.34 -1.28 16 2 C -0.05 -0.76 3.63 -91.13 -0.33 -1.09 16 3 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.12 2.08 6.83 -3.64 -0.02 2.05 16 5 N -0.94 -20.58 3.47 -58.12 -0.20 -20.78 16 6 S 2.71 73.03 5.12 -107.50 -0.55 72.48 16 7 O -0.99 -28.92 17.56 -57.17 -1.00 -29.92 16 8 O -0.99 -28.46 15.26 -57.17 -0.87 -29.33 16 9 C -1.02 -28.11 9.74 30.60 0.30 -27.81 16 10 H 0.10 2.71 7.81 -52.48 -0.41 2.30 16 11 C 0.13 3.69 5.46 -17.82 -0.10 3.59 16 12 N -0.84 -24.55 13.19 55.43 0.73 -23.82 16 13 Si 0.92 20.48 29.54 -169.99 -5.02 15.46 16 14 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 15 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 17 C 0.19 3.85 6.63 -83.66 -0.55 3.29 16 18 C -0.15 -3.07 9.43 -39.19 -0.37 -3.44 16 19 C -0.09 -1.39 10.02 -39.71 -0.40 -1.79 16 20 C -0.16 -2.27 10.06 -39.56 -0.40 -2.67 16 21 C -0.08 -1.10 10.04 -39.61 -0.40 -1.50 16 22 C -0.15 -2.46 5.55 -104.26 -0.58 -3.04 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.29 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.15 3.29 6.08 -52.49 -0.32 2.97 16 30 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 286.68 15.07 4.32 4.32 Total: -1.00 -33.74 286.68 -8.76 -42.50 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.65 Total: 2.75 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: -2.51 Total: -33.67 kcal Atomic # 7 Polarization: -45.13 SS G_CDS: 0.53 Total: -44.60 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -1.88 Total: -59.25 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 73.03 SS G_CDS: -0.55 Total: 72.48 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.74 -8.76 -42.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398498676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.172 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds