Wall clock time and date at job start Mon Mar 30 2020 05:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.47004 * 2 1 4 4 C 1.53740 * 110.42186 * 122.44100 * 2 1 3 5 5 N 1.46531 * 105.18744 * 118.76740 * 4 2 1 6 6 S 1.65601 * 124.95870 * 179.97438 * 5 4 2 7 7 O 1.42095 * 106.40501 * 23.55366 * 6 5 4 8 8 O 1.42101 * 106.40210 * 156.47501 * 6 5 4 9 9 C 1.76200 * 107.21954 * 270.01403 * 6 5 4 10 10 H 1.08012 * 119.99796 * 0.02562 * 9 6 5 11 11 C 1.37870 * 120.00558 * 180.02562 * 9 6 5 12 12 N 1.31520 * 119.99900 * 359.97438 * 11 9 6 13 13 Si 1.86799 * 120.00463 * 180.02562 * 11 9 6 14 14 H 1.48502 * 109.46868 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47502 * 119.99940 * 13 11 9 16 16 H 1.48504 * 109.46990 * 239.99826 * 13 11 9 17 17 C 1.39575 * 110.08749 * 359.97438 * 5 4 2 18 18 C 1.39672 * 129.32275 * 180.02562 * 17 5 4 19 19 C 1.37838 * 120.28166 * 179.97438 * 18 17 5 20 20 C 1.38294 * 120.22795 * 359.97438 * 19 18 17 21 21 C 1.38237 * 119.83760 * 359.80477 * 20 19 18 22 22 C 1.38169 * 120.14916 * 0.42397 * 21 20 19 23 23 H 1.09003 * 109.46752 * 180.98668 * 1 2 3 24 24 H 1.08994 * 109.47462 * 300.98709 * 1 2 3 25 25 H 1.09003 * 109.47267 * 60.99495 * 1 2 3 26 26 H 1.09000 * 110.30532 * 359.83505 * 4 2 1 27 27 H 1.09005 * 110.38563 * 237.73846 * 4 2 1 28 28 H 0.96994 * 120.00145 * 179.97438 * 12 11 9 29 29 H 1.08002 * 119.85853 * 359.97438 * 18 17 5 30 30 H 1.07999 * 119.88085 * 180.02562 * 19 18 17 31 31 H 1.08003 * 120.07918 * 180.02562 * 20 19 18 32 32 H 1.07993 * 119.92438 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9112 1.0212 0.0000 4 6 2.0664 -0.7729 1.2159 5 7 2.8382 -1.8846 0.6542 6 16 3.6351 -3.0317 1.5439 7 8 2.9982 -3.0686 2.8136 8 8 3.7639 -4.1718 0.7056 9 6 5.2684 -2.4328 1.8239 10 1 5.5663 -1.4722 1.4299 11 6 6.1661 -3.1903 2.5457 12 7 5.8033 -4.3597 3.0259 13 14 7.8975 -2.5551 2.8431 14 1 8.0529 -1.2239 2.2036 15 1 8.1363 -2.4340 4.3038 16 1 8.8797 -3.5027 2.2579 17 6 2.8036 -1.8358 -0.7403 18 6 3.3970 -2.6918 -1.6708 19 6 3.2395 -2.4667 -3.0216 20 6 2.4920 -1.3913 -3.4657 21 6 1.8977 -0.5422 -2.5510 22 6 2.0566 -0.7609 -1.1960 23 1 -0.3633 -1.0276 0.0177 24 1 -0.3634 0.5290 0.8809 25 1 -0.3634 0.4983 -0.8988 26 1 1.2404 -1.1519 1.8177 27 1 2.7100 -0.1325 1.8191 28 1 6.4350 -4.8928 3.5334 29 1 3.9817 -3.5337 -1.3306 30 1 3.7009 -3.1330 -3.7355 31 1 2.3698 -1.2175 -4.5246 32 1 1.3140 0.2982 -2.8962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398498676.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:36 Heat of formation + Delta-G solvation = -88.740813 kcal Electronic energy + Delta-G solvation = -18595.639903 eV Core-core repulsion = 15646.174815 eV Total energy + Delta-G solvation = -2949.465088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.44907 -37.81369 -37.31108 -36.36958 -35.32510 -34.23834 -30.72304 -30.33863 -28.40951 -27.08393 -23.96622 -23.05419 -21.54745 -20.88389 -19.59973 -18.46947 -17.35769 -17.20910 -16.73592 -16.42706 -15.95478 -15.74864 -15.42487 -14.62367 -14.36269 -14.11218 -13.89898 -13.55432 -13.44981 -13.32657 -13.11749 -13.08126 -12.71323 -12.65786 -12.59783 -12.35652 -12.03149 -11.92829 -11.47987 -11.40531 -11.35318 -10.98731 -9.66616 -8.96229 -8.68507 -7.63621 -0.01999 0.51247 0.58564 1.27227 1.27633 1.46763 2.12182 2.45889 2.52592 2.90677 3.50020 3.52641 3.56841 4.02377 4.09921 4.13855 4.27529 4.37803 4.51512 4.63647 4.65420 4.76490 4.88343 4.92831 5.03276 5.13006 5.19212 5.37202 5.41601 5.51402 5.65827 5.70987 5.75390 5.83234 6.24646 6.64333 8.09961 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.024089 B = 0.007493 C = 0.006776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.053164 B = 3736.023662 C = 4131.476029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.044 4.044 3 H 0.120 0.880 4 C 0.100 3.900 5 N -0.951 5.951 6 S 2.714 3.286 7 O -1.028 7.028 8 O -1.022 7.022 9 C -1.036 5.036 10 H 0.115 0.885 11 C 0.071 3.929 12 N -0.891 5.891 13 Si 0.995 3.005 14 H -0.249 1.249 15 H -0.252 1.252 16 H -0.255 1.255 17 C 0.140 3.860 18 C -0.192 4.192 19 C -0.091 4.091 20 C -0.146 4.146 21 C -0.070 4.070 22 C -0.143 4.143 23 H 0.039 0.961 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.303 0.697 29 H 0.109 0.891 30 H 0.145 0.855 31 H 0.163 0.837 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 11.600 -10.302 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 H 0.138 0.862 4 C -0.023 4.023 5 N -0.773 5.773 6 S 2.819 3.181 7 O -1.018 7.018 8 O -1.012 7.012 9 C -1.170 5.170 10 H 0.133 0.867 11 C -0.142 4.142 12 N -0.522 5.522 13 Si 0.812 3.188 14 H -0.172 1.172 15 H -0.176 1.176 16 H -0.179 1.179 17 C 0.043 3.957 18 C -0.214 4.214 19 C -0.110 4.110 20 C -0.165 4.165 21 C -0.088 4.088 22 C -0.148 4.148 23 H 0.058 0.942 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.181 0.819 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -6.483 10.532 -9.715 15.727 hybrid contribution 1.406 -0.278 0.751 1.618 sum -5.077 10.254 -8.964 14.536 Atomic orbital electron populations 1.21812 0.91379 1.01853 1.04088 1.20733 0.97916 0.99355 0.88345 0.86231 1.22294 0.95411 0.86918 0.97704 1.56437 1.63584 1.43933 1.13330 1.00294 0.75392 0.71489 0.70952 1.93312 1.78986 1.86727 1.42793 1.93297 1.88483 1.50323 1.69142 1.30792 1.20878 1.17045 1.48333 0.86656 1.26081 1.06020 0.92728 0.89396 1.69975 1.40130 1.11679 1.30413 0.85046 0.74098 0.79913 0.79772 1.17218 1.17637 1.17883 1.18553 0.97793 0.97182 0.82210 1.21190 1.04677 1.01177 0.94343 1.21125 0.98327 0.98569 0.92955 1.21384 0.98971 0.95033 1.01103 1.20773 0.98623 0.99988 0.89406 1.20491 1.01660 0.96735 0.95936 0.94202 0.90235 0.89553 0.90261 0.89684 0.88710 0.87288 0.83693 0.81912 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 9.04 71.98 0.65 -2.04 16 2 C -0.04 -1.16 3.63 -11.13 -0.04 -1.20 16 3 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 4 C 0.10 3.57 6.83 86.62 0.59 4.16 16 5 N -0.95 -43.33 3.47 -337.80 -1.17 -44.50 16 6 S 2.71 155.71 5.12 -56.49 -0.29 155.42 16 7 O -1.03 -63.76 17.56 -128.00 -2.25 -66.00 16 8 O -1.02 -63.66 15.26 -128.00 -1.95 -65.61 16 9 C -1.04 -59.71 9.74 67.73 0.66 -59.05 16 10 H 0.12 6.15 7.81 -2.90 -0.02 6.12 16 11 C 0.07 4.04 5.46 84.65 0.46 4.51 16 12 N -0.89 -53.90 13.19 21.45 0.28 -53.62 16 13 Si 0.99 41.95 29.54 68.60 2.03 43.97 16 14 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 15 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 16 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 17 C 0.14 5.78 6.63 38.34 0.25 6.04 16 18 C -0.19 -7.95 9.43 22.52 0.21 -7.73 16 19 C -0.09 -2.77 10.02 22.19 0.22 -2.55 16 20 C -0.15 -3.40 10.06 22.28 0.22 -3.17 16 21 C -0.07 -1.63 10.04 22.25 0.22 -1.41 16 22 C -0.14 -4.43 5.55 -19.63 -0.11 -4.54 16 23 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.08 2.75 7.70 -2.39 -0.02 2.73 16 27 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 28 H 0.30 16.24 8.31 -92.71 -0.77 15.47 16 29 H 0.11 5.29 6.08 -2.91 -0.02 5.28 16 30 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 32 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -79.57 286.68 1.12 -78.45 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.12 Total: 18.87 kcal Atomic # 6 Polarization: -70.34 SS G_CDS: 3.35 Total: -66.98 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -0.89 Total: -98.12 kcal Atomic # 8 Polarization: -127.41 SS G_CDS: -4.20 Total: -131.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 155.71 SS G_CDS: -0.29 Total: 155.42 kcal Total: -79.57 1.12 -78.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398498676.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.293 kcal (2) G-P(sol) polarization free energy of solvation -79.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds