Wall clock time and date at job start Mon Mar 30 2020 04:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46794 * 269.99475 * 3 2 1 5 5 H 1.48499 * 109.47177 * 29.99141 * 3 2 1 6 6 H 1.48492 * 109.47228 * 149.99802 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37622 * 119.74171 * 180.22515 * 10 9 7 12 12 C 1.38639 * 120.24860 * 359.52374 * 11 10 9 13 13 C 1.50696 * 119.74657 * 180.22798 * 12 11 10 14 14 N 1.46500 * 109.46922 * 90.00127 * 13 12 11 15 15 C 1.48569 * 137.86407 * 274.61193 * 14 13 12 16 16 C 1.55016 * 102.71189 * 153.18326 * 15 14 13 17 17 S 1.66927 * 137.86047 * 94.99886 * 14 13 12 18 18 O 1.42096 * 107.52194 * 314.69448 * 17 14 13 19 19 O 1.42100 * 107.52305 * 89.26084 * 17 14 13 20 20 C 1.38625 * 120.49818 * 0.25095 * 12 11 10 21 21 C 1.37615 * 120.25450 * 359.97438 * 20 12 11 22 22 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.13049 * 0.02784 * 10 9 7 24 24 H 1.08000 * 119.87511 * 179.79707 * 11 10 9 25 25 H 1.08997 * 109.47081 * 209.99575 * 13 12 11 26 26 H 1.08996 * 109.47487 * 330.00038 * 13 12 11 27 27 H 1.08992 * 110.84572 * 271.68613 * 15 14 13 28 28 H 1.09006 * 110.83736 * 34.67447 * 15 14 13 29 29 H 1.09005 * 115.33930 * 273.03583 * 16 15 14 30 30 H 1.09001 * 115.00295 * 137.22597 * 16 15 14 31 31 H 1.08002 * 119.87351 * 179.97438 * 20 12 11 32 32 H 1.08000 * 120.13220 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4397 2.6527 0.6998 6 1 3.5397 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4140 -3.5340 -1.5593 12 6 0.0636 -4.7524 -1.1015 13 6 -0.6364 -6.0266 -1.4980 14 7 -0.0512 -6.5393 -2.7393 15 6 -0.2182 -6.3374 -4.2017 16 6 1.1821 -6.7010 -4.7584 17 16 1.1203 -7.6381 -3.1941 18 8 2.2562 -7.4184 -2.3690 19 8 0.4899 -8.9044 -3.3288 20 6 1.1799 -4.8072 -0.2814 21 6 1.8271 -3.6500 0.0870 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1511 -1.4167 -1.5687 24 1 -1.2843 -3.5030 -2.1980 25 1 -0.5178 -6.7675 -0.7074 26 1 -1.6966 -5.8260 -1.6519 27 1 -0.9809 -7.0058 -4.6009 28 1 -0.4677 -5.2998 -4.4239 29 1 1.9022 -5.8830 -4.7803 30 1 1.1745 -7.3089 -5.6631 31 1 1.5431 -5.7618 0.0697 32 1 2.6969 -3.6950 0.7256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399088366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:10 Heat of formation + Delta-G solvation = -6.634965 kcal Electronic energy + Delta-G solvation = -17874.380057 eV Core-core repulsion = 14928.475345 eV Total energy + Delta-G solvation = -2945.904711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -37.91215 -37.20401 -36.57340 -35.63373 -33.95350 -31.84152 -29.46572 -29.09695 -26.47294 -23.82841 -22.38977 -20.96470 -20.14427 -18.49945 -17.33250 -16.91570 -16.76202 -16.32649 -15.34456 -14.63775 -14.40296 -14.02574 -13.79277 -13.55591 -13.08232 -12.67548 -12.27708 -12.18882 -11.97251 -11.90420 -11.82159 -11.59666 -11.18387 -11.12156 -10.84203 -10.72048 -10.36951 -10.17457 -9.79250 -9.41216 -9.17612 -8.64143 -7.47858 -7.34740 -6.80908 -4.39073 0.35050 2.22755 2.81031 3.04186 3.08232 3.08574 3.21692 3.49121 3.71395 3.89629 4.40162 4.56800 4.65136 4.98626 5.28775 5.56300 5.59761 5.66839 5.98397 6.03959 6.09825 6.35175 6.45074 6.94551 6.99724 7.04355 7.28083 7.34934 7.59670 7.84257 8.03305 8.10159 8.28087 8.61124 8.86043 8.94709 10.13190 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.039029 B = 0.004627 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.251387 B = 6050.279723 C = 6117.771891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.078 0.922 9 C 0.115 3.885 10 C -0.171 4.171 11 C -0.083 4.083 12 C -0.246 4.246 13 C 0.248 3.752 14 N -0.969 5.969 15 C 0.006 3.994 16 C -0.572 4.572 17 S 2.554 3.446 18 O -0.952 6.952 19 O -0.958 6.958 20 C -0.065 4.065 21 C -0.227 4.227 22 H 0.281 0.719 23 H 0.117 0.883 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.112 0.888 29 H 0.154 0.846 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -7.828 -8.452 11.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.112 3.888 10 C -0.191 4.191 11 C -0.102 4.102 12 C -0.249 4.249 13 C 0.128 3.872 14 N -0.813 5.813 15 C -0.123 4.123 16 C -0.702 4.702 17 S 2.650 3.350 18 O -0.941 6.941 19 O -0.948 6.948 20 C -0.084 4.084 21 C -0.247 4.247 22 H 0.092 0.908 23 H 0.134 0.866 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.172 0.828 30 H 0.167 0.833 31 H 0.108 0.892 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.855 -8.521 -7.679 11.502 hybrid contribution -0.133 1.620 -0.586 1.728 sum -0.988 -6.900 -8.264 10.812 Atomic orbital electron populations 1.69831 1.07616 1.29252 1.34910 1.25932 0.94727 1.01373 0.92180 0.86303 0.80548 0.80500 0.79333 1.19272 1.20298 1.18555 1.19660 0.98165 0.91269 1.39827 0.90341 1.17668 0.90964 0.92039 0.88108 1.21286 0.99529 0.96714 1.01557 1.20481 0.98087 0.92709 0.98912 1.19390 1.02532 0.93534 1.09471 1.19497 0.95041 0.93151 0.79525 1.58316 1.57809 1.58750 1.06383 1.23124 0.96930 1.08984 0.83245 1.30725 1.02469 1.17019 1.20010 1.07890 0.74773 0.74630 0.77664 1.93580 1.51499 1.85531 1.63503 1.93646 1.75394 1.39887 1.85827 1.20435 0.94557 0.96615 0.96825 1.20984 1.03689 0.92864 1.07152 0.90846 0.86561 0.89800 0.90868 0.91457 0.88499 0.86908 0.82768 0.83327 0.89201 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.12 10.95 55.55 0.61 -19.51 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.46 -12.13 9.06 -37.74 -0.34 -12.47 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 9 C 0.11 3.05 5.57 -106.82 -0.60 2.46 16 10 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 11 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 12 C -0.25 -5.17 5.48 -104.33 -0.57 -5.75 16 13 C 0.25 4.14 7.15 -5.20 -0.04 4.10 16 14 N -0.97 -14.47 4.32 -172.40 -0.75 -15.21 16 15 C 0.01 0.06 7.48 -1.83 -0.01 0.05 16 16 C -0.57 -5.34 9.47 38.22 0.36 -4.98 16 17 S 2.55 35.08 7.05 -107.50 -0.76 34.32 16 18 O -0.95 -17.07 18.18 -57.17 -1.04 -18.11 16 19 O -0.96 -14.95 18.12 -57.17 -1.04 -15.99 16 20 C -0.07 -1.49 9.67 -39.67 -0.38 -1.87 16 21 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 22 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 23 H 0.12 3.05 6.16 -52.49 -0.32 2.72 16 24 H 0.08 1.67 8.06 -52.49 -0.42 1.24 16 25 H 0.07 1.13 8.08 -51.93 -0.42 0.71 16 26 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.15 1.43 8.14 -51.93 -0.42 1.01 16 30 H 0.15 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.09 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 292.00 15.07 4.40 4.40 Total: -1.00 -32.18 292.00 -10.05 -42.22 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -3.67 Total: 4.12 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -2.77 Total: -29.64 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.14 Total: -34.72 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -2.08 Total: -34.10 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: 35.08 SS G_CDS: -0.76 Total: 34.32 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.18 -10.05 -42.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399088366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.587 kcal (2) G-P(sol) polarization free energy of solvation -32.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds