Wall clock time and date at job start Mon Mar 30 2020 04:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86800 * 120.00254 * 2 1 4 4 H 1.48502 * 109.46794 * 269.99475 * 3 2 1 5 5 H 1.48499 * 109.47177 * 29.99141 * 3 2 1 6 6 H 1.48492 * 109.47228 * 149.99802 * 3 2 1 7 7 C 1.39950 * 119.99991 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00182 * 197.72226 * 7 2 1 9 9 C 1.41399 * 119.99773 * 17.71280 * 7 2 1 10 10 C 1.40715 * 120.24183 * 24.53568 * 9 7 2 11 11 C 1.37622 * 119.74171 * 180.22515 * 10 9 7 12 12 C 1.38639 * 120.24860 * 359.52374 * 11 10 9 13 13 C 1.50696 * 119.74657 * 180.22798 * 12 11 10 14 14 N 1.46500 * 109.46922 * 90.00127 * 13 12 11 15 15 C 1.48569 * 137.86407 * 274.61193 * 14 13 12 16 16 C 1.55016 * 102.71189 * 153.18326 * 15 14 13 17 17 S 1.66927 * 137.86047 * 94.99886 * 14 13 12 18 18 O 1.42096 * 107.52194 * 314.69448 * 17 14 13 19 19 O 1.42100 * 107.52305 * 89.26084 * 17 14 13 20 20 C 1.38625 * 120.49818 * 0.25095 * 12 11 10 21 21 C 1.37615 * 120.25450 * 359.97438 * 20 12 11 22 22 H 0.97005 * 119.99803 * 0.02562 * 1 2 3 23 23 H 1.08002 * 120.13049 * 0.02784 * 10 9 7 24 24 H 1.08000 * 119.87511 * 179.79707 * 11 10 9 25 25 H 1.08997 * 109.47081 * 209.99575 * 13 12 11 26 26 H 1.08996 * 109.47487 * 330.00038 * 13 12 11 27 27 H 1.08992 * 110.84572 * 271.68613 * 15 14 13 28 28 H 1.09006 * 110.83736 * 34.67447 * 15 14 13 29 29 H 1.09005 * 115.33930 * 273.03583 * 16 15 14 30 30 H 1.09001 * 115.00295 * 137.22597 * 16 15 14 31 31 H 1.08002 * 119.87351 * 179.97438 * 20 12 11 32 32 H 1.08000 * 120.13220 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4899 2.0462 -1.4001 5 1 1.4397 2.6527 0.6998 6 1 3.5397 1.4401 0.7000 7 6 2.0080 -1.2120 0.0005 8 1 3.0495 -1.2341 0.2852 9 6 1.3512 -2.4077 -0.3715 10 6 0.2200 -2.3644 -1.2074 11 6 -0.4140 -3.5340 -1.5593 12 6 0.0636 -4.7524 -1.1015 13 6 -0.6364 -6.0266 -1.4980 14 7 -0.0512 -6.5393 -2.7393 15 6 -0.2182 -6.3374 -4.2017 16 6 1.1821 -6.7010 -4.7584 17 16 1.1203 -7.6381 -3.1941 18 8 2.2562 -7.4184 -2.3690 19 8 0.4899 -8.9044 -3.3288 20 6 1.1799 -4.8072 -0.2814 21 6 1.8271 -3.6500 0.0870 22 1 -0.4850 0.8401 -0.0004 23 1 -0.1511 -1.4167 -1.5687 24 1 -1.2843 -3.5030 -2.1980 25 1 -0.5178 -6.7675 -0.7074 26 1 -1.6966 -5.8260 -1.6519 27 1 -0.9809 -7.0058 -4.6009 28 1 -0.4677 -5.2998 -4.4239 29 1 1.9022 -5.8830 -4.7803 30 1 1.1745 -7.3089 -5.6631 31 1 1.5431 -5.7618 0.0697 32 1 2.6969 -3.6950 0.7256 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399088366.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:09 Heat of formation + Delta-G solvation = -30.007485 kcal Electronic energy + Delta-G solvation = -17875.393565 eV Core-core repulsion = 14928.475345 eV Total energy + Delta-G solvation = -2946.918220 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.58315 -38.38140 -37.75248 -36.80591 -35.71389 -33.32920 -31.22459 -30.71936 -27.99933 -25.39223 -23.42242 -22.77207 -21.87828 -19.60672 -19.22073 -18.07785 -17.85017 -17.43627 -17.09458 -16.04397 -15.75427 -15.61517 -15.27103 -14.92034 -14.35653 -14.07318 -13.81065 -13.63329 -13.46604 -13.18409 -13.02210 -12.90866 -12.86566 -12.79588 -12.45461 -12.27373 -11.77679 -11.54119 -11.26600 -11.18821 -11.01259 -9.86881 -9.34909 -9.21945 -8.64529 -6.34268 -0.66092 0.83281 1.16609 1.34089 1.38489 1.51066 1.62564 2.20889 2.57052 2.66610 2.77912 3.47819 3.64510 3.77477 4.12859 4.39676 4.43577 4.59422 4.61068 4.68969 4.77160 4.87464 4.92791 5.05451 5.16861 5.40087 5.48504 5.71723 5.81547 5.98965 6.10968 6.26164 6.41014 6.70987 6.94429 7.04223 8.32227 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.039029 B = 0.004627 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.251387 B = 6050.279723 C = 6117.771891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.502 4.502 8 H 0.070 0.930 9 C 0.082 3.918 10 C -0.192 4.192 11 C -0.081 4.081 12 C -0.228 4.228 13 C 0.248 3.752 14 N -0.986 5.986 15 C -0.004 4.004 16 C -0.513 4.513 17 S 2.542 3.458 18 O -1.007 7.007 19 O -0.983 6.983 20 C -0.075 4.075 21 C -0.249 4.249 22 H 0.289 0.711 23 H 0.102 0.898 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.117 0.883 29 H 0.162 0.838 30 H 0.197 0.803 31 H 0.101 0.899 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.871 -8.149 -10.804 13.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.186 1.186 7 C -0.532 4.532 8 H 0.089 0.911 9 C 0.080 3.920 10 C -0.212 4.212 11 C -0.100 4.100 12 C -0.231 4.231 13 C 0.126 3.874 14 N -0.829 5.829 15 C -0.131 4.131 16 C -0.648 4.648 17 S 2.643 3.357 18 O -0.996 6.996 19 O -0.972 6.972 20 C -0.094 4.094 21 C -0.269 4.269 22 H 0.100 0.900 23 H 0.120 0.880 24 H 0.131 0.869 25 H 0.100 0.900 26 H 0.109 0.891 27 H 0.144 0.856 28 H 0.136 0.864 29 H 0.180 0.820 30 H 0.214 0.786 31 H 0.119 0.881 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.717 -8.879 -9.999 13.482 hybrid contribution 0.077 1.534 0.013 1.536 sum -1.640 -7.344 -9.987 12.505 Atomic orbital electron populations 1.69867 1.08902 1.30580 1.35490 1.26723 0.95510 1.04355 0.91144 0.85207 0.78990 0.75922 0.79598 1.18490 1.19059 1.18563 1.19847 0.98209 0.92711 1.42413 0.91138 1.17987 0.92108 0.92714 0.89232 1.21290 1.00096 0.97371 1.02421 1.20762 0.98473 0.92022 0.98700 1.19885 1.01027 0.95290 1.06871 1.19420 0.95775 0.91163 0.80999 1.58062 1.58230 1.58841 1.07754 1.23480 0.98617 1.10173 0.80817 1.30716 1.01088 1.15220 1.17815 1.08329 0.73463 0.74535 0.79379 1.93516 1.53167 1.86027 1.66899 1.93609 1.75441 1.41398 1.86733 1.20678 0.95186 0.96302 0.97230 1.21135 1.04286 0.93520 1.07935 0.90050 0.87995 0.86850 0.90042 0.89086 0.85579 0.86406 0.82020 0.78562 0.88081 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.80 10.95 21.83 0.24 -42.56 16 2 C 0.04 1.91 5.14 85.26 0.44 2.35 16 3 Si 0.98 38.30 29.59 68.60 2.03 40.33 16 4 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 5 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.50 -27.73 9.06 23.46 0.21 -27.51 16 8 H 0.07 3.82 7.91 -2.91 -0.02 3.79 16 9 C 0.08 4.53 5.57 -21.29 -0.12 4.41 16 10 C -0.19 -9.97 8.70 22.73 0.20 -9.77 16 11 C -0.08 -3.52 9.67 22.22 0.21 -3.31 16 12 C -0.23 -9.33 5.48 -19.68 -0.11 -9.44 16 13 C 0.25 7.69 7.15 85.63 0.61 8.31 16 14 N -0.99 -26.69 4.32 -699.36 -3.02 -29.72 16 15 C 0.00 -0.06 7.48 86.67 0.65 0.58 16 16 C -0.51 -7.06 9.47 72.67 0.69 -6.37 16 17 S 2.54 64.61 7.05 -56.49 -0.40 64.21 16 18 O -1.01 -35.91 18.18 -128.01 -2.33 -38.24 16 19 O -0.98 -28.81 18.12 -128.01 -2.32 -31.13 16 20 C -0.08 -3.45 9.67 22.21 0.21 -3.24 16 21 C -0.25 -12.92 9.80 22.73 0.22 -12.70 16 22 H 0.29 13.49 8.30 -92.70 -0.77 12.72 16 23 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 24 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 25 H 0.08 2.38 8.08 -2.39 -0.02 2.36 16 26 H 0.09 2.40 8.08 -2.39 -0.02 2.38 16 27 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.16 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.20 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 4.34 8.06 -2.91 -0.02 4.32 16 32 H 0.09 4.44 8.06 -2.91 -0.02 4.42 16 Total: -1.00 -73.35 292.00 -1.45 -74.81 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.12 Total: 19.00 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 3.22 Total: -56.69 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -2.78 Total: -72.28 kcal Atomic # 8 Polarization: -64.73 SS G_CDS: -4.65 Total: -69.37 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: 64.61 SS G_CDS: -0.40 Total: 64.21 kcal Total: -73.35 -1.45 -74.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399088366.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.798 kcal (2) G-P(sol) polarization free energy of solvation -73.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds