Wall clock time and date at job start Mon Mar 30 2020 04:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46723 * 299.99510 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.28632 * 7 2 1 9 9 C 1.50703 * 120.00217 * 355.55841 * 7 2 1 10 10 C 1.53002 * 115.55188 * 274.99662 * 9 7 2 11 11 N 1.46505 * 109.46901 * 294.33082 * 10 9 7 12 12 S 1.65595 * 119.99977 * 159.13983 * 11 10 9 13 13 O 1.42104 * 104.27467 * 181.06980 * 12 11 10 14 14 O 1.42104 * 104.27199 * 308.91928 * 12 11 10 15 15 C 1.81395 * 104.45317 * 64.99385 * 12 11 10 16 16 C 1.53001 * 109.46983 * 180.02562 * 15 12 11 17 17 Cl 1.80305 * 109.46984 * 180.02562 * 16 15 12 18 18 C 1.53000 * 117.49884 * 129.32180 * 9 7 2 19 19 C 1.52998 * 117.49477 * 60.66227 * 9 7 2 20 20 H 0.97007 * 119.99528 * 5.00889 * 1 2 3 21 21 H 1.08999 * 109.46833 * 54.32472 * 10 9 7 22 22 H 1.08996 * 109.46914 * 174.32661 * 10 9 7 23 23 H 0.97006 * 119.99534 * 339.12985 * 11 10 9 24 24 H 1.09004 * 109.47205 * 300.00032 * 15 12 11 25 25 H 1.09001 * 109.46823 * 60.00233 * 15 12 11 26 26 H 1.09004 * 109.46952 * 299.99912 * 16 15 12 27 27 H 1.09001 * 109.47375 * 60.00296 * 16 15 12 28 28 H 1.09001 * 117.49774 * 0.02562 * 18 9 7 29 29 H 1.08993 * 117.49727 * 145.02457 * 18 9 7 30 30 H 1.09004 * 117.50046 * 214.98315 * 19 9 7 31 31 H 1.09003 * 117.50238 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0763 9 6 1.2543 -2.4972 0.1022 10 6 0.9141 -2.9538 1.5223 11 7 2.1506 -3.2589 2.2465 12 16 2.1582 -3.2730 3.9024 13 8 3.5041 -3.5752 4.2440 14 8 1.5715 -2.0309 4.2660 15 6 1.0637 -4.6490 4.3485 16 6 0.9868 -4.7661 5.8721 17 17 -0.1006 -6.1343 6.3155 18 6 1.5759 -3.5799 -0.9300 19 6 0.2484 -2.8213 -1.0041 20 1 -0.4850 0.8369 -0.0734 21 1 0.3763 -2.1597 2.0402 22 1 0.2898 -3.8461 1.4772 23 1 2.9647 -3.4527 1.7560 24 1 0.0669 -4.4650 3.9478 25 1 1.4574 -5.5761 3.9319 26 1 1.9835 -4.9499 6.2732 27 1 0.5929 -3.8389 6.2884 28 1 2.3304 -3.3497 -1.6823 29 1 1.5448 -4.6173 -0.5974 30 1 -0.6556 -3.3602 -0.7203 31 1 0.1288 -2.0919 -1.8052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404164180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:30 Heat of formation + Delta-G solvation = -65.417227 kcal Electronic energy + Delta-G solvation = -16690.924958 eV Core-core repulsion = 13740.038407 eV Total energy + Delta-G solvation = -2950.886551 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.16301 -36.77684 -36.42820 -35.69064 -33.39321 -32.70406 -31.92138 -26.03429 -24.90985 -24.07783 -21.18160 -19.42093 -18.95328 -17.44081 -16.71968 -16.22372 -15.87337 -15.07960 -14.61586 -14.27445 -14.15728 -13.54436 -13.45044 -13.22090 -12.39600 -12.29948 -12.11347 -11.85009 -11.70473 -11.31461 -11.14254 -10.95667 -10.92233 -10.68520 -10.50699 -10.49831 -10.25683 -9.56892 -9.20060 -8.67762 -8.46342 -8.19366 -6.05671 -4.12974 0.35657 1.98330 3.04361 3.29895 3.39692 3.42113 3.87208 4.19518 4.26691 4.40380 4.62271 4.83132 5.16914 5.22547 5.25408 5.47458 5.79707 6.15767 6.18036 6.29026 6.43673 6.65998 6.94757 7.04799 7.34503 7.52577 7.60616 7.85862 8.35689 8.87835 9.54058 11.02115 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025331 B = 0.005659 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.083781 B = 4946.301777 C = 5356.215564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.033 3.967 10 C 0.154 3.846 11 N -1.091 6.091 12 S 2.613 3.387 13 O -0.965 6.965 14 O -0.942 6.942 15 C -0.658 4.658 16 C -0.020 4.020 17 Cl -0.169 7.169 18 C -0.212 4.212 19 C -0.144 4.144 20 H 0.261 0.739 21 H 0.083 0.917 22 H 0.034 0.966 23 H 0.417 0.583 24 H 0.144 0.856 25 H 0.142 0.858 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -10.202 7.906 12.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.131 4.131 3 Si 0.716 3.284 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.530 4.530 8 H 0.079 0.921 9 C 0.031 3.969 10 C 0.028 3.972 11 N -0.852 5.852 12 S 2.701 3.299 13 O -0.955 6.955 14 O -0.932 6.932 15 C -0.783 4.783 16 C -0.084 4.084 17 Cl -0.143 7.143 18 C -0.249 4.249 19 C -0.183 4.183 20 H 0.070 0.930 21 H 0.102 0.898 22 H 0.052 0.948 23 H 0.253 0.747 24 H 0.162 0.838 25 H 0.160 0.840 26 H 0.125 0.875 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.270 -9.568 8.695 12.932 hybrid contribution 0.118 0.178 -0.527 0.569 sum 0.388 -9.390 8.168 12.452 Atomic orbital electron populations 1.69973 1.05852 1.26793 1.48850 1.24960 0.94862 0.99008 0.94278 0.86588 0.80316 0.83836 0.77619 1.19664 1.21088 1.20740 1.20382 0.92745 0.88449 1.51456 0.92126 1.18941 0.99098 0.93479 0.85417 1.21041 0.82945 0.97408 0.95780 1.55122 1.19876 1.86316 1.23883 1.04950 0.74776 0.75998 0.74194 1.93578 1.32590 1.86142 1.83230 1.93646 1.79680 1.37252 1.82612 1.31195 1.20333 1.23791 1.03004 1.23849 0.97938 0.93189 0.93443 1.98728 1.69608 1.52087 1.93897 1.23031 1.00706 0.95496 1.05672 1.22503 0.90689 1.01390 1.03722 0.92951 0.89827 0.94783 0.74730 0.83802 0.83983 0.87482 0.87313 0.90334 0.91660 0.91847 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.11 12.65 55.43 0.70 -23.41 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.49 -12.77 8.75 -34.44 -0.30 -13.07 16 8 H 0.06 1.58 7.82 -52.48 -0.41 1.17 16 9 C 0.03 0.73 1.49 -155.66 -0.23 0.50 16 10 C 0.15 3.00 6.00 -4.04 -0.02 2.98 16 11 N -1.09 -18.42 5.77 -10.61 -0.06 -18.48 16 12 S 2.61 39.45 5.46 -107.50 -0.59 38.87 16 13 O -0.97 -16.34 18.08 -57.54 -1.04 -17.38 16 14 O -0.94 -18.19 17.44 -57.54 -1.00 -19.19 16 15 C -0.66 -7.02 6.20 37.16 0.23 -6.79 16 16 C -0.02 -0.20 6.66 37.16 0.25 0.05 16 17 Cl -0.17 -1.82 29.15 -51.86 -1.51 -3.33 16 18 C -0.21 -4.16 9.96 -26.69 -0.27 -4.42 16 19 C -0.14 -3.12 9.14 -26.69 -0.24 -3.37 16 20 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 21 H 0.08 1.85 7.60 -51.93 -0.39 1.45 16 22 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 23 H 0.42 6.77 8.66 -34.47 -0.30 6.47 16 24 H 0.14 1.44 8.14 -51.92 -0.42 1.02 16 25 H 0.14 1.26 8.14 -51.92 -0.42 0.83 16 26 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 LS Contribution 298.65 15.07 4.50 4.50 Total: -1.00 -31.58 298.65 -8.75 -40.32 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -4.04 Total: 4.25 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: -0.69 Total: -22.27 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.64 Total: -41.89 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -2.04 Total: -36.57 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 39.45 SS G_CDS: -0.59 Total: 38.87 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -1.51 Total: -3.33 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.58 -8.75 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404164180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.093 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds