Wall clock time and date at job start Mon Mar 30 2020 04:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00398 * 2 1 4 4 H 1.48497 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46723 * 299.99510 * 3 2 1 6 6 H 1.48495 * 109.46936 * 59.99565 * 3 2 1 7 7 C 1.37880 * 119.99735 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99979 * 175.28632 * 7 2 1 9 9 C 1.50703 * 120.00217 * 355.55841 * 7 2 1 10 10 C 1.53002 * 115.55188 * 274.99662 * 9 7 2 11 11 N 1.46505 * 109.46901 * 294.33082 * 10 9 7 12 12 S 1.65595 * 119.99977 * 159.13983 * 11 10 9 13 13 O 1.42104 * 104.27467 * 181.06980 * 12 11 10 14 14 O 1.42104 * 104.27199 * 308.91928 * 12 11 10 15 15 C 1.81395 * 104.45317 * 64.99385 * 12 11 10 16 16 C 1.53001 * 109.46983 * 180.02562 * 15 12 11 17 17 Cl 1.80305 * 109.46984 * 180.02562 * 16 15 12 18 18 C 1.53000 * 117.49884 * 129.32180 * 9 7 2 19 19 C 1.52998 * 117.49477 * 60.66227 * 9 7 2 20 20 H 0.97007 * 119.99528 * 5.00889 * 1 2 3 21 21 H 1.08999 * 109.46833 * 54.32472 * 10 9 7 22 22 H 1.08996 * 109.46914 * 174.32661 * 10 9 7 23 23 H 0.97006 * 119.99534 * 339.12985 * 11 10 9 24 24 H 1.09004 * 109.47205 * 300.00032 * 15 12 11 25 25 H 1.09001 * 109.46823 * 60.00233 * 15 12 11 26 26 H 1.09004 * 109.46952 * 299.99912 * 16 15 12 27 27 H 1.09001 * 109.47375 * 60.00296 * 16 15 12 28 28 H 1.09001 * 117.49774 * 0.02562 * 18 9 7 29 29 H 1.08993 * 117.49727 * 145.02457 * 18 9 7 30 30 H 1.09004 * 117.50046 * 214.98315 * 19 9 7 31 31 H 1.09003 * 117.50238 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0818 -1.1958 -0.0763 9 6 1.2543 -2.4972 0.1022 10 6 0.9141 -2.9538 1.5223 11 7 2.1506 -3.2589 2.2465 12 16 2.1582 -3.2730 3.9024 13 8 3.5041 -3.5752 4.2440 14 8 1.5715 -2.0309 4.2660 15 6 1.0637 -4.6490 4.3485 16 6 0.9868 -4.7661 5.8721 17 17 -0.1006 -6.1343 6.3155 18 6 1.5759 -3.5799 -0.9300 19 6 0.2484 -2.8213 -1.0041 20 1 -0.4850 0.8369 -0.0734 21 1 0.3763 -2.1597 2.0402 22 1 0.2898 -3.8461 1.4772 23 1 2.9647 -3.4527 1.7560 24 1 0.0669 -4.4650 3.9478 25 1 1.4574 -5.5761 3.9319 26 1 1.9835 -4.9499 6.2732 27 1 0.5929 -3.8389 6.2884 28 1 2.3304 -3.3497 -1.6823 29 1 1.5448 -4.6173 -0.5974 30 1 -0.6556 -3.3602 -0.7203 31 1 0.1288 -2.0919 -1.8052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404164180.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:30 Heat of formation + Delta-G solvation = -88.179891 kcal Electronic energy + Delta-G solvation = -16691.912021 eV Core-core repulsion = 13740.038407 eV Total energy + Delta-G solvation = -2951.873614 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 267.048 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.76775 -38.12392 -37.24972 -37.01150 -34.85351 -33.87445 -33.57686 -27.82861 -26.59080 -24.95682 -22.81778 -21.15303 -20.19665 -18.77382 -18.21106 -17.47902 -17.16481 -16.60448 -16.19957 -15.63394 -15.31974 -14.99551 -14.71281 -14.32830 -13.96381 -13.70944 -13.28537 -13.14597 -13.06777 -12.96592 -12.87967 -12.82383 -12.34940 -12.07462 -11.92608 -11.51297 -11.46451 -11.30315 -10.95640 -10.36068 -10.18614 -9.86659 -8.08003 -6.17501 -0.81912 1.17312 1.37266 1.43360 1.50078 1.82036 2.43414 2.79710 3.21283 3.24527 3.28978 3.58454 3.68897 4.12553 4.26116 4.31459 4.59890 4.63841 4.66932 4.73525 4.79900 5.10616 5.37550 5.38406 5.71074 5.80304 5.85645 6.27859 6.45320 6.88426 7.50463 8.98951 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.025331 B = 0.005659 C = 0.005226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.083781 B = 4946.301777 C = 5356.215564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.027 3.973 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.288 1.288 7 C -0.500 4.500 8 H 0.050 0.950 9 C 0.000 4.000 10 C 0.163 3.837 11 N -1.097 6.097 12 S 2.622 3.378 13 O -0.987 6.987 14 O -0.994 6.994 15 C -0.628 4.628 16 C -0.032 4.032 17 Cl -0.170 7.170 18 C -0.181 4.181 19 C -0.153 4.153 20 H 0.258 0.742 21 H 0.049 0.951 22 H 0.075 0.925 23 H 0.420 0.580 24 H 0.158 0.842 25 H 0.172 0.828 26 H 0.125 0.875 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 -12.337 8.436 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.174 4.174 3 Si 0.759 3.241 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.538 4.538 8 H 0.068 0.932 9 C -0.002 4.002 10 C 0.037 3.963 11 N -0.857 5.857 12 S 2.716 3.284 13 O -0.977 6.977 14 O -0.984 6.984 15 C -0.758 4.758 16 C -0.096 4.096 17 Cl -0.144 7.144 18 C -0.218 4.218 19 C -0.191 4.191 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.255 0.745 24 H 0.176 0.824 25 H 0.189 0.811 26 H 0.144 0.856 27 H 0.135 0.865 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.322 -11.663 9.194 14.855 hybrid contribution 0.129 0.753 -0.655 1.007 sum 0.451 -10.910 8.539 13.861 Atomic orbital electron populations 1.70046 1.06607 1.26989 1.50464 1.25539 0.95563 1.01421 0.94849 0.85901 0.79518 0.81323 0.77348 1.19366 1.20402 1.21489 1.20708 0.92579 0.90406 1.50138 0.93207 1.19082 1.00033 0.93484 0.87608 1.20771 0.83994 0.98044 0.93526 1.55023 1.19364 1.86903 1.24389 1.04409 0.74634 0.76211 0.73182 1.93547 1.34491 1.86571 1.83116 1.93587 1.80315 1.41510 1.82990 1.30871 1.19255 1.21665 1.04056 1.24066 0.99135 0.93637 0.92737 1.98734 1.69737 1.52131 1.93781 1.23030 0.98733 0.96538 1.03527 1.22422 0.92377 1.01668 1.02668 0.93242 0.93211 0.90706 0.74514 0.82398 0.81061 0.85642 0.86466 0.90925 0.87928 0.89918 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.55 12.65 21.45 0.27 -50.28 16 2 C 0.03 1.45 5.43 84.66 0.46 1.91 16 3 Si 0.93 44.06 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 7 C -0.50 -26.15 8.75 25.60 0.22 -25.92 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.60 16 9 C 0.00 -0.01 1.49 -52.93 -0.08 -0.09 16 10 C 0.16 6.10 6.00 86.38 0.52 6.62 16 11 N -1.10 -35.41 5.77 -187.48 -1.08 -36.49 16 12 S 2.62 75.68 5.46 -56.49 -0.31 75.38 16 13 O -0.99 -32.20 18.08 -127.65 -2.31 -34.50 16 14 O -0.99 -38.56 17.44 -127.65 -2.23 -40.79 16 15 C -0.63 -11.20 6.20 71.98 0.45 -10.76 16 16 C -0.03 -0.53 6.66 71.98 0.48 -0.05 16 17 Cl -0.17 -3.13 29.15 -2.72 -0.08 -3.21 16 18 C -0.18 -6.67 9.96 30.62 0.30 -6.36 16 19 C -0.15 -6.45 9.14 30.62 0.28 -6.17 16 20 H 0.26 13.98 8.32 -92.70 -0.77 13.20 16 21 H 0.05 2.20 7.60 -2.39 -0.02 2.18 16 22 H 0.07 2.17 8.09 -2.39 -0.02 2.15 16 23 H 0.42 13.02 8.66 -96.74 -0.84 12.18 16 24 H 0.16 2.54 8.14 -2.39 -0.02 2.52 16 25 H 0.17 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 30 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 31 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -68.85 298.65 -0.77 -69.62 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.30 Total: 15.00 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 2.63 Total: -40.81 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -0.81 Total: -86.77 kcal Atomic # 8 Polarization: -70.76 SS G_CDS: -4.53 Total: -75.29 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: 75.68 SS G_CDS: -0.31 Total: 75.38 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.08 Total: -3.21 kcal Total: -68.85 -0.77 -69.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404164180.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.557 kcal (2) G-P(sol) polarization free energy of solvation -68.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds