Wall clock time and date at job start Mon Mar 30 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47367 * 240.00415 * 3 2 1 5 5 H 1.48502 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47223 * 119.99924 * 3 2 1 7 7 C 1.38957 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99548 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00004 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00059 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00111 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47420 * 179.97438 * 12 10 9 14 14 C 1.35665 * 117.00216 * 179.97438 * 13 12 10 15 15 C 1.39182 * 119.86001 * 0.24933 * 14 13 12 16 16 C 1.36495 * 120.31897 * 180.25940 * 15 14 13 17 17 C 1.40119 * 120.03185 * 359.48928 * 16 15 14 18 18 C 1.46672 * 120.13670 * 180.23523 * 17 16 15 19 19 O 1.21325 * 119.99755 * 180.02562 * 18 17 16 20 20 C 1.40325 * 119.71981 * 0.25890 * 17 16 15 21 21 F 1.35105 * 120.15738 * 180.02562 * 20 17 16 22 22 C 1.38015 * 119.68389 * 359.97438 * 20 17 16 23 23 H 0.97001 * 119.99778 * 359.97438 * 1 2 3 24 24 H 0.96993 * 119.99526 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.47524 * 59.99587 * 12 10 9 26 26 H 1.09003 * 109.46804 * 299.99854 * 12 10 9 27 27 H 1.08001 * 119.83985 * 0.02562 * 15 14 13 28 28 H 1.08002 * 119.98656 * 179.77438 * 16 15 14 29 29 H 1.07995 * 120.00401 * 359.97438 * 18 17 16 30 30 H 1.07993 * 120.01708 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 8 2.1722 -5.9491 -0.0016 14 6 1.6536 -7.2027 -0.0016 15 6 0.2733 -7.3817 -0.0064 16 6 -0.2585 -8.6388 -0.0012 17 6 0.5854 -9.7573 -0.0017 18 6 0.0164 -11.1091 -0.0012 19 8 0.7495 -12.0758 -0.0012 20 6 1.9773 -9.5786 -0.0021 21 9 2.7992 -10.6509 -0.0031 22 6 2.5025 -8.3023 -0.0026 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6172 -4.9205 -0.8913 26 1 0.6167 -4.9208 0.8887 27 1 -0.3800 -6.5218 -0.0106 28 1 -1.3303 -8.7714 -0.0013 29 1 -1.0551 -11.2440 -0.0001 30 1 3.5728 -8.1586 -0.0025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404177538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:31 Heat of formation + Delta-G solvation = -124.562924 kcal Electronic energy + Delta-G solvation = -18775.995381 eV Core-core repulsion = 15258.763754 eV Total energy + Delta-G solvation = -3517.231628 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.07489 -40.44612 -39.15527 -38.18291 -36.87497 -34.11861 -31.66437 -31.38145 -30.45224 -28.39136 -25.02350 -24.24377 -23.18305 -21.33590 -19.65882 -18.68473 -18.12005 -17.35355 -16.71680 -16.37006 -16.24772 -15.68053 -15.54144 -15.25728 -14.87900 -14.32410 -14.17994 -14.14684 -13.79843 -13.55740 -12.98749 -12.78791 -12.38002 -12.17592 -11.68741 -11.32815 -11.21017 -10.94159 -10.55062 -10.37313 -9.98144 -9.68393 -9.20503 -8.63623 -8.52401 -8.17547 -6.58861 -4.00890 0.38475 0.93940 2.21068 2.79584 3.09506 3.18081 3.23322 3.39594 3.62281 3.92097 4.04545 4.10677 4.36113 4.63006 4.78474 4.94715 4.98467 5.03488 5.11748 5.23917 5.46314 5.63417 5.72879 5.82997 5.93131 6.00831 6.38949 7.16864 7.21621 7.39841 7.84367 8.38526 8.98562 9.28892 9.78740 10.58178 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.059226 B = 0.003203 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.654630 B = 8740.727844 C = 9198.236900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.436 3.564 11 O -0.573 6.573 12 C 0.047 3.953 13 O -0.271 6.271 14 C 0.207 3.793 15 C -0.239 4.239 16 C 0.004 3.996 17 C -0.283 4.283 18 C 0.384 3.616 19 O -0.461 6.461 20 C 0.201 3.799 21 F -0.114 7.114 22 C -0.212 4.212 23 H 0.275 0.725 24 H 0.394 0.606 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.145 0.855 28 H 0.145 0.855 29 H 0.107 0.893 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.249 -14.266 -0.003 15.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.188 5.188 10 C 0.221 3.779 11 O -0.457 6.457 12 C -0.032 4.032 13 O -0.181 6.181 14 C 0.158 3.842 15 C -0.258 4.258 16 C -0.015 4.015 17 C -0.285 4.285 18 C 0.243 3.757 19 O -0.335 6.335 20 C 0.180 3.820 21 F -0.092 7.092 22 C -0.232 4.232 23 H 0.085 0.915 24 H 0.228 0.772 25 H 0.103 0.897 26 H 0.103 0.897 27 H 0.162 0.838 28 H 0.162 0.838 29 H 0.124 0.876 30 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -4.930 -14.574 -0.004 15.385 hybrid contribution -0.399 0.937 0.002 1.018 sum -5.328 -13.637 -0.002 14.641 Atomic orbital electron populations 1.69591 1.06010 1.28709 1.49455 1.25305 0.95696 0.99892 0.96690 0.85853 0.78792 0.79968 0.79290 1.19690 1.20809 1.19695 1.19691 0.93508 0.81726 1.48415 0.87633 1.41673 1.09290 1.04061 1.63728 1.19219 0.88349 0.83954 0.86389 1.90591 1.13416 1.86616 1.55087 1.22699 0.91813 0.85852 1.02805 1.86197 1.35376 1.11079 1.85434 1.19138 0.91445 0.85239 0.88381 1.21162 0.94009 0.99384 1.11256 1.20755 0.99779 0.90305 0.90643 1.20867 0.92333 0.97842 1.17445 1.23732 0.95055 0.86110 0.70786 1.90593 1.65061 1.42700 1.35130 1.17490 0.87008 0.82860 0.94598 1.91588 1.71560 1.53621 1.92456 1.20282 1.01836 0.88764 1.12312 0.91502 0.77204 0.89722 0.89717 0.83769 0.83773 0.87647 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.99 13.05 55.50 0.72 -22.26 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 2.95 7.16 -52.48 -0.38 2.58 16 9 N -0.55 -13.03 5.29 -10.96 -0.06 -13.09 16 10 C 0.44 9.83 7.86 -10.99 -0.09 9.74 16 11 O -0.57 -15.51 16.08 -14.37 -0.23 -15.74 16 12 C 0.05 0.75 5.21 36.00 0.19 0.94 16 13 O -0.27 -4.60 9.65 -38.61 -0.37 -4.98 16 14 C 0.21 2.80 6.70 -38.98 -0.26 2.53 16 15 C -0.24 -2.45 8.96 -39.86 -0.36 -2.81 16 16 C 0.00 0.03 9.73 -39.51 -0.38 -0.36 16 17 C -0.28 -2.95 5.88 -105.00 -0.62 -3.57 16 18 C 0.38 3.64 11.43 34.14 0.39 4.03 16 19 O -0.46 -6.42 16.16 5.52 0.09 -6.33 16 20 C 0.20 2.58 7.29 -38.88 -0.28 2.29 16 21 F -0.11 -1.65 15.55 2.25 0.04 -1.61 16 22 C -0.21 -2.81 9.96 -39.41 -0.39 -3.21 16 23 H 0.28 6.68 8.31 -40.82 -0.34 6.34 16 24 H 0.39 8.63 7.90 -40.82 -0.32 8.31 16 25 H 0.08 1.10 7.64 -51.93 -0.40 0.71 16 26 H 0.08 1.10 7.66 -51.93 -0.40 0.71 16 27 H 0.14 1.21 6.26 -52.49 -0.33 0.88 16 28 H 0.14 0.62 8.06 -52.49 -0.42 0.19 16 29 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 30 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 283.93 15.07 4.28 4.28 Total: -1.00 -32.92 283.93 -4.83 -37.75 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -2.22 Total: 4.97 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -2.04 Total: 1.97 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.67 Total: -35.35 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.51 Total: -27.04 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.92 -4.83 -37.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404177538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.813 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds