Wall clock time and date at job start Mon Mar 30 2020 04:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86796 * 120.00422 * 2 1 4 4 H 1.48494 * 109.47367 * 240.00415 * 3 2 1 5 5 H 1.48502 * 109.46836 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47223 * 119.99924 * 3 2 1 7 7 C 1.38957 * 119.99696 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99548 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00134 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00004 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00059 * 359.97438 * 10 9 7 12 12 C 1.50690 * 120.00111 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.47420 * 179.97438 * 12 10 9 14 14 C 1.35665 * 117.00216 * 179.97438 * 13 12 10 15 15 C 1.39182 * 119.86001 * 0.24933 * 14 13 12 16 16 C 1.36495 * 120.31897 * 180.25940 * 15 14 13 17 17 C 1.40119 * 120.03185 * 359.48928 * 16 15 14 18 18 C 1.46672 * 120.13670 * 180.23523 * 17 16 15 19 19 O 1.21325 * 119.99755 * 180.02562 * 18 17 16 20 20 C 1.40325 * 119.71981 * 0.25890 * 17 16 15 21 21 F 1.35105 * 120.15738 * 180.02562 * 20 17 16 22 22 C 1.38015 * 119.68389 * 359.97438 * 20 17 16 23 23 H 0.97001 * 119.99778 * 359.97438 * 1 2 3 24 24 H 0.96993 * 119.99526 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.47524 * 59.99587 * 12 10 9 26 26 H 1.09003 * 109.46804 * 299.99854 * 12 10 9 27 27 H 1.08001 * 119.83985 * 0.02562 * 15 14 13 28 28 H 1.08002 * 119.98656 * 179.77438 * 16 15 14 29 29 H 1.07995 * 120.00401 * 359.97438 * 18 17 16 30 30 H 1.07993 * 120.01708 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2126 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 8 2.1722 -5.9491 -0.0016 14 6 1.6536 -7.2027 -0.0016 15 6 0.2733 -7.3817 -0.0064 16 6 -0.2585 -8.6388 -0.0012 17 6 0.5854 -9.7573 -0.0017 18 6 0.0164 -11.1091 -0.0012 19 8 0.7495 -12.0758 -0.0012 20 6 1.9773 -9.5786 -0.0021 21 9 2.7992 -10.6509 -0.0031 22 6 2.5025 -8.3023 -0.0026 23 1 -0.4850 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6172 -4.9205 -0.8913 26 1 0.6167 -4.9208 0.8887 27 1 -0.3800 -6.5218 -0.0106 28 1 -1.3303 -8.7714 -0.0013 29 1 -1.0551 -11.2440 -0.0001 30 1 3.5728 -8.1586 -0.0025 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404177538.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:31 Heat of formation + Delta-G solvation = -147.515301 kcal Electronic energy + Delta-G solvation = -18776.990671 eV Core-core repulsion = 15258.763754 eV Total energy + Delta-G solvation = -3518.226917 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.09645 -41.49574 -40.24518 -39.66357 -37.95743 -36.04799 -33.42387 -32.46378 -31.32933 -29.77202 -26.69998 -25.25120 -24.09418 -22.28757 -21.26507 -20.11600 -19.60713 -18.34522 -17.85506 -17.50090 -17.40646 -16.87074 -16.76503 -16.58227 -16.08764 -15.88598 -15.27473 -15.19657 -15.06527 -14.97215 -14.25500 -13.76195 -13.59235 -13.52170 -13.31203 -12.92675 -12.48614 -12.26872 -12.12617 -12.02583 -11.57942 -10.77342 -10.48952 -10.10830 -10.08310 -9.46605 -8.52558 -6.02095 -0.47034 0.09827 1.37618 1.42357 1.43394 1.50968 1.68313 1.89846 2.31757 2.57996 3.03074 3.13829 3.27324 3.34159 3.62207 3.80458 3.96727 4.12679 4.22283 4.24732 4.32808 4.39908 4.91928 4.93389 5.02930 5.15112 5.37266 5.51548 5.88601 6.16882 6.51436 6.52438 7.04890 7.42235 7.97986 8.63873 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.059226 B = 0.003203 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.654630 B = 8740.727844 C = 9198.236900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.003 4.003 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.267 1.267 6 H -0.273 1.273 7 C -0.341 4.341 8 H 0.078 0.922 9 N -0.555 5.555 10 C 0.430 3.570 11 O -0.629 6.629 12 C 0.060 3.940 13 O -0.310 6.310 14 C 0.184 3.816 15 C -0.232 4.232 16 C 0.028 3.972 17 C -0.282 4.282 18 C 0.392 3.608 19 O -0.512 6.512 20 C 0.173 3.827 21 F -0.133 7.133 22 C -0.230 4.230 23 H 0.281 0.719 24 H 0.403 0.597 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.173 0.827 28 H 0.202 0.798 29 H 0.173 0.827 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -14.542 -0.004 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.204 4.204 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.198 1.198 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.192 5.192 10 C 0.217 3.783 11 O -0.516 6.516 12 C -0.017 4.017 13 O -0.221 6.221 14 C 0.136 3.864 15 C -0.250 4.250 16 C 0.011 3.989 17 C -0.284 4.284 18 C 0.254 3.746 19 O -0.388 6.388 20 C 0.153 3.847 21 F -0.111 7.111 22 C -0.249 4.249 23 H 0.091 0.909 24 H 0.238 0.762 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.190 0.810 28 H 0.219 0.781 29 H 0.189 0.811 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.428 -14.857 -0.005 17.081 hybrid contribution 0.642 0.939 0.003 1.137 sum -7.786 -13.918 -0.002 15.948 Atomic orbital electron populations 1.69627 1.06647 1.29765 1.49012 1.25993 0.96568 1.02205 0.95682 0.85012 0.77885 0.76658 0.78968 1.19777 1.19174 1.19785 1.19622 0.92808 0.83705 1.50886 0.90364 1.41674 1.09604 1.03965 1.64006 1.20379 0.88105 0.85876 0.83918 1.90554 1.16234 1.87861 1.56934 1.22555 0.90667 0.82255 1.06237 1.86118 1.36810 1.12468 1.86748 1.19301 0.93143 0.83531 0.90406 1.21524 0.92353 1.01399 1.09714 1.21328 1.02086 0.88258 0.87265 1.21361 0.91201 0.99863 1.15972 1.24645 0.97225 0.84472 0.68229 1.90600 1.66715 1.44039 1.37457 1.17843 0.88389 0.82129 0.96323 1.91537 1.72381 1.54291 1.92877 1.20266 1.01514 0.89610 1.13538 0.90903 0.76162 0.86055 0.86051 0.81002 0.78066 0.81138 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.74 13.05 21.66 0.28 -45.45 16 2 C 0.00 -0.16 5.50 84.93 0.47 0.31 16 3 Si 0.99 40.83 29.55 68.60 2.03 42.85 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 8 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 9 N -0.55 -26.42 5.29 -306.98 -1.62 -28.04 16 10 C 0.43 19.56 7.86 87.65 0.69 20.25 16 11 O -0.63 -35.41 16.08 15.95 0.26 -35.15 16 12 C 0.06 1.81 5.21 71.23 0.37 2.19 16 13 O -0.31 -10.47 9.65 -70.78 -0.68 -11.16 16 14 C 0.18 4.78 6.70 22.66 0.15 4.93 16 15 C -0.23 -3.77 8.96 22.09 0.20 -3.57 16 16 C 0.03 0.31 9.73 22.32 0.22 0.53 16 17 C -0.28 -5.03 5.88 -20.11 -0.12 -5.15 16 18 C 0.39 6.00 11.43 70.02 0.80 6.80 16 19 O -0.51 -13.55 16.16 -3.17 -0.05 -13.60 16 20 C 0.17 4.46 7.29 22.72 0.17 4.63 16 21 F -0.13 -4.02 15.55 44.97 0.70 -3.32 16 22 C -0.23 -6.32 9.96 22.38 0.22 -6.10 16 23 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 24 H 0.40 17.35 7.90 -92.71 -0.73 16.61 16 25 H 0.12 2.74 7.64 -2.38 -0.02 2.72 16 26 H 0.12 2.74 7.66 -2.39 -0.02 2.72 16 27 H 0.17 1.85 6.26 -2.91 -0.02 1.83 16 28 H 0.20 0.00 8.06 -2.91 -0.02 -0.02 16 29 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 30 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 Total: -1.00 -77.43 283.93 5.36 -72.07 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.47 Total: 14.66 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 3.98 Total: 7.13 kcal Atomic # 7 Polarization: -72.15 SS G_CDS: -1.34 Total: -73.49 kcal Atomic # 8 Polarization: -59.43 SS G_CDS: -0.48 Total: -59.91 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.70 Total: -3.32 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -77.43 5.36 -72.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404177538.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.441 kcal (2) G-P(sol) polarization free energy of solvation -77.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds