Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38278 * 119.92570 * 2 1 4 4 C 1.38113 * 120.06791 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.93167 * 359.97438 * 4 3 2 6 6 N 1.39929 * 120.07234 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00055 * 33.28506 * 6 5 4 8 8 O 1.21288 * 119.99927 * 5.27195 * 7 6 5 9 9 C 1.50695 * 120.00026 * 185.27643 * 7 6 5 10 10 S 1.81408 * 109.47191 * 179.97438 * 9 7 6 11 11 O 1.42098 * 109.46978 * 289.05954 * 10 9 7 12 12 C 1.76200 * 102.99912 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99657 * 0.02562 * 12 10 9 14 14 C 1.37870 * 119.99651 * 180.02562 * 12 10 9 15 15 N 1.31509 * 120.00448 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99836 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47174 * 89.99985 * 16 14 12 18 18 H 1.48501 * 109.47348 * 209.99886 * 16 14 12 19 19 H 1.48500 * 109.47265 * 329.99933 * 16 14 12 20 20 C 1.38868 * 119.85691 * 0.27887 * 5 4 3 21 21 C 1.38116 * 119.92950 * 359.46674 * 20 5 4 22 22 H 1.09003 * 109.46919 * 90.00605 * 1 2 3 23 23 H 1.09001 * 109.47168 * 209.99851 * 1 2 3 24 24 H 1.08996 * 109.47517 * 329.99759 * 1 2 3 25 25 H 1.07999 * 119.96876 * 359.97228 * 3 2 1 26 26 H 1.08008 * 120.03532 * 179.97438 * 4 3 2 27 27 H 0.96997 * 119.99836 * 213.28536 * 6 5 4 28 28 H 1.08994 * 109.47455 * 299.99857 * 9 7 6 29 29 H 1.09007 * 109.47111 * 60.00019 * 9 7 6 30 30 H 0.96999 * 120.00561 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.03831 * 179.70492 * 20 5 4 32 32 H 1.08005 * 119.96597 * 180.25716 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6732 0.0001 -0.0005 7 6 6.3470 0.9759 0.6400 8 8 5.7444 1.7991 1.2960 9 6 7.8492 1.0441 0.5412 10 16 8.4550 2.4570 1.5043 11 8 8.1014 3.6655 0.8459 12 6 10.1999 2.3749 1.2737 13 1 10.6279 1.5922 0.6648 14 6 11.0189 3.3097 1.8706 15 7 10.4978 4.2624 2.6124 16 14 12.8687 3.2231 1.6255 17 1 13.2476 4.0192 0.4305 18 1 13.5531 3.7724 2.8235 19 1 13.2762 1.8089 1.4276 20 6 3.5781 -1.2017 -0.0059 21 6 2.1969 -1.1984 0.0000 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6551 2.1327 -0.0005 26 1 4.1163 2.1382 -0.0010 27 1 6.1581 -0.7021 -0.4615 28 1 8.2814 0.1239 0.9343 29 1 8.1396 1.1650 -0.5025 30 1 11.0739 4.9203 3.0321 31 1 4.1163 -2.1380 -0.0107 32 1 1.6552 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526834007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = -62.582403 kcal Electronic energy + Delta-G solvation = -17142.991852 eV Core-core repulsion = 14194.661078 eV Total energy + Delta-G solvation = -2948.330774 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25020 -38.38210 -34.85386 -33.64314 -32.79888 -31.71177 -30.89388 -29.10798 -26.06683 -25.70501 -22.95910 -21.61389 -20.19249 -18.26105 -17.54794 -16.54357 -15.50234 -15.43404 -15.27387 -14.92967 -14.49301 -14.16440 -13.80143 -13.52250 -13.37998 -13.20582 -12.59231 -12.50831 -12.21449 -11.99645 -11.61671 -11.48486 -11.19780 -11.08131 -10.81744 -10.56282 -10.23692 -10.07517 -9.53203 -9.06528 -8.86994 -8.41097 -7.88285 -6.88256 -6.30836 -4.82762 1.31443 1.46015 2.95715 3.05031 3.13738 3.19946 3.26077 3.68947 3.86111 4.14436 4.80179 4.85004 4.88546 5.02906 5.06274 5.25245 5.42280 5.48446 5.53059 5.67412 5.69567 5.77662 5.86162 6.07276 6.22115 6.33071 6.34989 6.43573 6.62647 6.66973 7.13678 7.45580 7.56431 8.15975 8.43337 9.07625 10.46643 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.061959 B = 0.003739 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.799714 B = 7487.020767 C = 7814.421135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.120 4.120 5 C 0.151 3.849 6 N -0.682 5.682 7 C 0.545 3.455 8 O -0.514 6.514 9 C -0.519 4.519 10 S 1.391 4.609 11 O -0.888 6.888 12 C -0.839 4.839 13 H 0.079 0.921 14 C 0.120 3.880 15 N -0.853 5.853 16 Si 0.906 3.094 17 H -0.275 1.275 18 H -0.277 1.277 19 H -0.266 1.266 20 C -0.149 4.149 21 C -0.103 4.103 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.123 0.877 26 H 0.138 0.862 27 H 0.409 0.591 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.281 0.719 31 H 0.123 0.877 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.223 -12.923 -2.458 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.114 4.114 3 C -0.118 4.118 4 C -0.140 4.140 5 C 0.057 3.943 6 N -0.327 5.327 7 C 0.334 3.666 8 O -0.388 6.388 9 C -0.648 4.648 10 S 1.583 4.417 11 O -0.882 6.882 12 C -0.979 4.979 13 H 0.097 0.903 14 C -0.093 4.093 15 N -0.486 5.486 16 Si 0.731 3.269 17 H -0.200 1.200 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.170 4.170 21 C -0.121 4.121 22 H 0.084 0.916 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.141 0.859 26 H 0.155 0.845 27 H 0.244 0.756 28 H 0.144 0.856 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.139 -11.520 -1.401 18.292 hybrid contribution 2.267 -0.359 -2.654 3.508 sum -11.872 -11.879 -4.055 17.277 Atomic orbital electron populations 1.20725 0.91395 1.02528 1.01934 1.19855 0.95968 0.93186 1.02435 1.20929 0.93556 0.97591 0.99705 1.21282 0.94217 0.98102 1.00384 1.17854 0.83142 0.93995 0.99336 1.43851 1.04245 1.29933 1.54706 1.20417 0.89491 0.79541 0.77159 1.90713 1.70273 1.38615 1.39193 1.28761 0.95337 1.25684 1.15012 1.70033 0.85194 0.80781 1.05649 1.92794 1.83250 1.39326 1.72866 1.27690 1.11182 1.19071 1.39995 0.90250 1.24760 1.00456 0.92400 0.91730 1.69892 1.37471 1.13388 1.27843 0.86403 0.83047 0.79080 0.78387 1.20001 1.20206 1.18994 1.20854 0.94491 0.96358 1.05283 1.20747 0.93285 0.97435 1.00673 0.91576 0.91834 0.91703 0.85877 0.84462 0.75563 0.85630 0.88318 0.90841 0.85857 0.86026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.11 -1.29 5.88 -104.59 -0.62 -1.91 16 3 C -0.10 -1.31 9.69 -39.61 -0.38 -1.70 16 4 C -0.12 -1.91 8.66 -39.39 -0.34 -2.25 16 5 C 0.15 2.24 6.28 -83.69 -0.53 1.71 16 6 N -0.68 -10.05 5.34 -9.86 -0.05 -10.11 16 7 C 0.54 10.26 7.59 -10.99 -0.08 10.18 16 8 O -0.51 -11.39 13.55 5.55 0.08 -11.31 16 9 C -0.52 -9.91 6.37 36.00 0.23 -9.68 16 10 S 1.39 34.76 12.11 -107.50 -1.30 33.46 16 11 O -0.89 -28.04 17.82 -35.23 -0.63 -28.67 16 12 C -0.84 -22.63 9.39 30.60 0.29 -22.35 16 13 H 0.08 2.02 7.81 -52.49 -0.41 1.61 16 14 C 0.12 3.31 5.46 -17.82 -0.10 3.21 16 15 N -0.85 -24.46 13.15 55.43 0.73 -23.73 16 16 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.15 -1.77 9.96 -39.39 -0.39 -2.16 16 21 C -0.10 -1.12 9.69 -39.61 -0.38 -1.50 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.14 2.54 6.42 -52.48 -0.34 2.20 16 27 H 0.41 4.55 8.82 -40.82 -0.36 4.19 16 28 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 29 H 0.10 1.90 8.14 -51.92 -0.42 1.48 16 30 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 297.93 15.07 4.49 4.49 Total: -1.00 -36.48 297.93 -7.27 -43.75 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -3.62 Total: 3.62 kcal Atomic # 6 Polarization: -25.05 SS G_CDS: -1.95 Total: -26.99 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.68 Total: -33.84 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -0.55 Total: -39.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 34.76 SS G_CDS: -1.30 Total: 33.46 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -36.48 -7.27 -43.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526834007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.829 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds