Wall clock time and date at job start Mon Mar 30 2020 04:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38278 * 119.92570 * 2 1 4 4 C 1.38113 * 120.06791 * 180.02562 * 3 2 1 5 5 C 1.38871 * 119.93167 * 359.97438 * 4 3 2 6 6 N 1.39929 * 120.07234 * 180.02562 * 5 4 3 7 7 C 1.34778 * 120.00055 * 33.28506 * 6 5 4 8 8 O 1.21288 * 119.99927 * 5.27195 * 7 6 5 9 9 C 1.50695 * 120.00026 * 185.27643 * 7 6 5 10 10 S 1.81408 * 109.47191 * 179.97438 * 9 7 6 11 11 O 1.42098 * 109.46978 * 289.05954 * 10 9 7 12 12 C 1.76200 * 102.99912 * 179.97438 * 10 9 7 13 13 H 1.08000 * 119.99657 * 0.02562 * 12 10 9 14 14 C 1.37870 * 119.99651 * 180.02562 * 12 10 9 15 15 N 1.31509 * 120.00448 * 0.02562 * 14 12 10 16 16 Si 1.86803 * 119.99836 * 180.02562 * 14 12 10 17 17 H 1.48506 * 109.47174 * 89.99985 * 16 14 12 18 18 H 1.48501 * 109.47348 * 209.99886 * 16 14 12 19 19 H 1.48500 * 109.47265 * 329.99933 * 16 14 12 20 20 C 1.38868 * 119.85691 * 0.27887 * 5 4 3 21 21 C 1.38116 * 119.92950 * 359.46674 * 20 5 4 22 22 H 1.09003 * 109.46919 * 90.00605 * 1 2 3 23 23 H 1.09001 * 109.47168 * 209.99851 * 1 2 3 24 24 H 1.08996 * 109.47517 * 329.99759 * 1 2 3 25 25 H 1.07999 * 119.96876 * 359.97228 * 3 2 1 26 26 H 1.08008 * 120.03532 * 179.97438 * 4 3 2 27 27 H 0.96997 * 119.99836 * 213.28536 * 6 5 4 28 28 H 1.08994 * 109.47455 * 299.99857 * 9 7 6 29 29 H 1.09007 * 109.47111 * 60.00019 * 9 7 6 30 30 H 0.96999 * 120.00561 * 180.02562 * 15 14 12 31 31 H 1.08000 * 120.03831 * 179.70492 * 20 5 4 32 32 H 1.08005 * 119.96597 * 180.25716 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1984 0.0000 4 6 3.5780 1.2018 -0.0005 5 6 4.2739 0.0001 -0.0005 6 7 5.6732 0.0001 -0.0005 7 6 6.3470 0.9759 0.6400 8 8 5.7444 1.7991 1.2960 9 6 7.8492 1.0441 0.5412 10 16 8.4550 2.4570 1.5043 11 8 8.1014 3.6655 0.8459 12 6 10.1999 2.3749 1.2737 13 1 10.6279 1.5922 0.6648 14 6 11.0189 3.3097 1.8706 15 7 10.4978 4.2624 2.6124 16 14 12.8687 3.2231 1.6255 17 1 13.2476 4.0192 0.4305 18 1 13.5531 3.7724 2.8235 19 1 13.2762 1.8089 1.4276 20 6 3.5781 -1.2017 -0.0059 21 6 2.1969 -1.1984 0.0000 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.6551 2.1327 -0.0005 26 1 4.1163 2.1382 -0.0010 27 1 6.1581 -0.7021 -0.4615 28 1 8.2814 0.1239 0.9343 29 1 8.1396 1.1650 -0.5025 30 1 11.0739 4.9203 3.0321 31 1 4.1163 -2.1380 -0.0107 32 1 1.6552 -2.1327 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526834007.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:04 Heat of formation + Delta-G solvation = -90.256930 kcal Electronic energy + Delta-G solvation = -17144.191909 eV Core-core repulsion = 14194.661078 eV Total energy + Delta-G solvation = -2949.530832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50706 -39.57245 -36.11435 -35.84258 -34.87975 -32.80153 -31.87904 -30.53735 -27.91932 -26.91763 -24.01931 -22.70049 -21.48680 -20.16577 -18.79518 -18.04178 -17.44048 -16.92503 -16.73952 -16.28667 -15.75460 -15.56246 -15.20872 -14.68749 -14.56853 -14.40703 -14.34543 -13.93801 -13.50165 -13.19544 -13.00778 -12.94386 -12.88903 -12.55370 -12.37987 -12.07875 -12.01123 -11.30157 -11.11354 -10.95588 -10.48963 -9.87724 -8.95884 -8.91342 -8.35268 -6.95416 0.26950 0.46048 1.26177 1.36008 1.46508 1.53962 1.59097 2.17817 2.27165 2.80697 2.84785 3.27583 3.82845 3.92398 4.01780 4.04521 4.13461 4.43698 4.49723 4.51570 4.62526 4.71594 4.87344 4.90984 5.09652 5.17406 5.37428 5.39964 5.41543 5.55877 5.70950 6.08823 6.10887 6.36051 6.98878 7.08421 8.44551 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.061959 B = 0.003739 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.799714 B = 7487.020767 C = 7814.421135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.108 4.108 3 C -0.114 4.114 4 C -0.151 4.151 5 C 0.122 3.878 6 N -0.660 5.660 7 C 0.541 3.459 8 O -0.557 6.557 9 C -0.498 4.498 10 S 1.390 4.610 11 O -0.969 6.969 12 C -0.858 4.858 13 H 0.091 0.909 14 C 0.061 3.939 15 N -0.893 5.893 16 Si 0.976 3.024 17 H -0.282 1.282 18 H -0.262 1.262 19 H -0.245 1.245 20 C -0.137 4.137 21 C -0.099 4.099 22 H 0.079 0.921 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.096 0.904 27 H 0.428 0.572 28 H 0.174 0.826 29 H 0.102 0.898 30 H 0.287 0.713 31 H 0.156 0.844 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -16.552 -3.027 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.109 4.109 3 C -0.132 4.132 4 C -0.172 4.172 5 C 0.028 3.972 6 N -0.307 5.307 7 C 0.329 3.671 8 O -0.435 6.435 9 C -0.633 4.633 10 S 1.589 4.411 11 O -0.964 6.964 12 C -0.998 4.998 13 H 0.110 0.890 14 C -0.149 4.149 15 N -0.527 5.527 16 Si 0.797 3.203 17 H -0.208 1.208 18 H -0.186 1.186 19 H -0.168 1.168 20 C -0.157 4.157 21 C -0.118 4.118 22 H 0.098 0.902 23 H 0.102 0.898 24 H 0.085 0.915 25 H 0.147 0.853 26 H 0.115 0.885 27 H 0.267 0.733 28 H 0.192 0.808 29 H 0.120 0.880 30 H 0.096 0.904 31 H 0.174 0.826 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.566 -15.158 -1.967 21.114 hybrid contribution 2.198 0.598 -2.552 3.421 sum -12.369 -14.559 -4.519 19.631 Atomic orbital electron populations 1.20802 0.88855 1.03689 1.03141 1.20283 0.97834 0.92541 1.00259 1.21093 0.92633 0.99225 1.00267 1.21166 0.95555 0.97313 1.03120 1.18057 0.82781 0.94793 1.01595 1.43468 1.04632 1.29072 1.53527 1.20295 0.89305 0.80039 0.77411 1.90717 1.70843 1.40461 1.41452 1.28269 0.96258 1.24356 1.14386 1.68905 0.84548 0.80609 1.07012 1.92710 1.84345 1.43474 1.75836 1.27985 1.12020 1.19645 1.40173 0.89032 1.25843 1.05914 0.91925 0.91203 1.70008 1.39511 1.14317 1.28859 0.85337 0.76598 0.80061 0.78337 1.20789 1.18612 1.16782 1.21203 0.95128 0.96167 1.03214 1.21249 0.93059 0.98685 0.98775 0.90199 0.89829 0.91481 0.85254 0.88533 0.73305 0.80843 0.87987 0.90374 0.82617 0.82216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.11 -2.21 5.88 -19.84 -0.12 -2.32 16 3 C -0.11 -3.03 9.69 22.25 0.22 -2.81 16 4 C -0.15 -5.04 8.66 22.39 0.19 -4.85 16 5 C 0.12 3.51 6.28 38.15 0.24 3.75 16 6 N -0.66 -18.79 5.34 -303.51 -1.62 -20.42 16 7 C 0.54 20.57 7.59 87.66 0.67 21.23 16 8 O -0.56 -26.03 13.55 -3.05 -0.04 -26.07 16 9 C -0.50 -18.69 6.37 71.23 0.45 -18.24 16 10 S 1.39 71.81 12.11 -56.49 -0.68 71.12 16 11 O -0.97 -64.63 17.82 -148.98 -2.65 -67.29 16 12 C -0.86 -46.53 9.39 67.73 0.64 -45.89 16 13 H 0.09 4.56 7.81 -2.91 -0.02 4.54 16 14 C 0.06 3.37 5.46 84.65 0.46 3.83 16 15 N -0.89 -52.60 13.15 21.44 0.28 -52.32 16 16 Si 0.98 41.67 29.54 68.60 2.03 43.70 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.24 -9.54 7.11 99.48 0.71 -8.83 16 20 C -0.14 -2.81 9.96 22.39 0.22 -2.59 16 21 C -0.10 -1.77 9.69 22.25 0.22 -1.56 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 24 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 25 H 0.13 3.09 8.06 -2.91 -0.02 3.06 16 26 H 0.10 3.96 6.42 -2.91 -0.02 3.94 16 27 H 0.43 8.44 8.82 -92.71 -0.82 7.62 16 28 H 0.17 4.77 8.14 -2.39 -0.02 4.75 16 29 H 0.10 3.83 8.14 -2.39 -0.02 3.81 16 30 H 0.29 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -84.44 297.93 1.53 -82.91 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.32 Total: 18.53 kcal Atomic # 6 Polarization: -54.07 SS G_CDS: 3.90 Total: -50.17 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.34 Total: -72.73 kcal Atomic # 8 Polarization: -90.66 SS G_CDS: -2.70 Total: -93.35 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: 71.81 SS G_CDS: -0.68 Total: 71.12 kcal Total: -84.44 1.53 -82.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526834007.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.348 kcal (2) G-P(sol) polarization free energy of solvation -84.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds