Wall clock time and date at job start Mon Mar 30 2020 05:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47388 * 2 1 4 4 C 1.50694 * 109.46899 * 120.00567 * 2 1 3 5 5 O 1.21291 * 120.00100 * 99.99741 * 4 2 1 6 6 N 1.34776 * 119.99944 * 279.71595 * 4 2 1 7 7 C 1.39931 * 120.00030 * 175.00149 * 6 4 2 8 8 C 1.38875 * 120.07163 * 326.56244 * 7 6 4 9 9 C 1.38105 * 119.92498 * 179.76266 * 8 7 6 10 10 C 1.38283 * 120.07569 * 0.48567 * 9 8 7 11 11 C 1.38283 * 120.13853 * 359.76394 * 10 9 8 12 12 C 1.38115 * 120.06984 * 0.02562 * 11 10 9 13 13 S 1.81405 * 109.46688 * 240.00168 * 2 1 3 14 14 O 1.42096 * 109.47017 * 305.94492 * 13 2 1 15 15 C 1.76195 * 103.00231 * 55.00524 * 13 2 1 16 16 H 1.08005 * 119.99958 * 359.97438 * 15 13 2 17 17 C 1.37876 * 120.00248 * 179.97438 * 15 13 2 18 18 N 1.31511 * 120.00014 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99870 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46987 * 90.00364 * 19 17 15 21 21 H 1.48502 * 109.46858 * 210.00067 * 19 17 15 22 22 H 1.48496 * 109.47263 * 330.00216 * 19 17 15 23 23 H 1.08998 * 109.47523 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46591 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.46985 * 59.99369 * 1 2 3 26 26 H 0.96999 * 119.99857 * 355.01478 * 6 4 2 27 27 H 1.07999 * 120.03437 * 359.97243 * 8 7 6 28 28 H 1.08003 * 119.96293 * 180.25282 * 9 8 7 29 29 H 1.07996 * 119.93393 * 179.74344 * 10 9 8 30 30 H 1.08004 * 119.96480 * 179.97438 * 11 10 9 31 31 H 1.08000 * 120.03270 * 179.97438 * 12 11 10 32 32 H 0.96991 * 120.00162 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8619 1.1556 6 7 2.0712 -0.0648 2.4127 7 6 2.4377 -0.7535 3.5743 8 6 2.1040 -2.0933 3.7236 9 6 2.4715 -2.7714 4.8691 10 6 3.1624 -2.1152 5.8713 11 6 3.4917 -0.7799 5.7280 12 6 3.1308 -0.0971 4.5829 13 16 2.1346 -0.8551 -1.4812 14 8 1.5510 -2.1487 -1.5527 15 6 1.3384 0.0119 -2.7922 16 1 0.6765 0.8362 -2.5709 17 6 1.5603 -0.3618 -4.1007 18 7 2.3658 -1.3658 -4.3703 19 14 0.7155 0.5571 -5.4905 20 1 1.5725 1.6878 -5.9291 21 1 0.4932 -0.3670 -6.6316 22 1 -0.5904 1.0808 -5.0159 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8449 0.8773 2.4585 27 1 1.5605 -2.6052 2.9431 28 1 2.2159 -3.8144 4.9841 29 1 3.4451 -2.6467 6.7680 30 1 4.0309 -0.2700 6.5127 31 1 3.3879 0.9459 4.4718 32 1 2.5221 -1.6285 -5.2907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526838894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:58 Heat of formation + Delta-G solvation = -57.323728 kcal Electronic energy + Delta-G solvation = -17621.462612 eV Core-core repulsion = 14673.359871 eV Total energy + Delta-G solvation = -2948.102741 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23702 -38.20480 -34.51397 -33.62100 -32.79138 -32.45457 -30.85122 -29.19975 -25.82823 -24.28147 -22.82486 -22.03925 -20.00607 -18.31131 -17.60983 -16.50102 -16.15860 -15.38577 -15.11601 -15.10693 -14.28280 -14.14050 -13.66432 -13.63530 -13.29928 -12.96313 -12.71962 -12.02700 -11.76298 -11.62262 -11.59175 -11.21593 -11.18227 -11.13693 -10.75123 -10.47140 -10.22263 -10.16321 -9.38959 -9.03605 -8.86589 -8.29410 -7.99815 -6.87603 -6.30782 -4.82188 1.34815 1.45824 2.95912 3.07390 3.14437 3.20349 3.26745 3.70018 3.91507 4.14475 4.83660 4.88631 4.97538 5.04919 5.18890 5.42137 5.47326 5.59614 5.63471 5.72178 5.89223 6.04433 6.07659 6.21420 6.38319 6.39878 6.48680 6.57982 6.65119 6.69389 7.13704 7.47104 7.59138 8.17239 8.47334 9.08173 10.46766 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.052297 B = 0.004387 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.270671 B = 6381.134943 C = 6592.516656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.481 4.481 3 H 0.120 0.880 4 C 0.544 3.456 5 O -0.508 6.508 6 N -0.680 5.680 7 C 0.158 3.842 8 C -0.125 4.125 9 C -0.100 4.100 10 C -0.146 4.146 11 C -0.103 4.103 12 C -0.154 4.154 13 S 1.384 4.616 14 O -0.873 6.873 15 C -0.833 4.833 16 H 0.082 0.918 17 C 0.121 3.879 18 N -0.855 5.855 19 Si 0.905 3.095 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.269 1.269 23 H 0.057 0.943 24 H 0.038 0.962 25 H 0.076 0.924 26 H 0.409 0.591 27 H 0.135 0.865 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.124 0.876 32 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.994 6.360 15.367 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.590 4.590 3 H 0.138 0.862 4 C 0.332 3.668 5 O -0.381 6.381 6 N -0.326 5.326 7 C 0.063 3.937 8 C -0.145 4.145 9 C -0.119 4.119 10 C -0.165 4.165 11 C -0.122 4.122 12 C -0.174 4.174 13 S 1.575 4.425 14 O -0.868 6.868 15 C -0.973 4.973 16 H 0.100 0.900 17 C -0.093 4.093 18 N -0.488 5.488 19 Si 0.730 3.270 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.194 1.194 23 H 0.076 0.924 24 H 0.057 0.943 25 H 0.094 0.906 26 H 0.244 0.756 27 H 0.153 0.847 28 H 0.141 0.859 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.142 0.858 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.900 4.649 15.138 16.309 hybrid contribution -2.888 1.131 -0.779 3.198 sum 1.013 5.781 14.358 15.511 Atomic orbital electron populations 1.21476 0.91938 1.02529 1.01808 1.28696 1.03591 1.12090 1.14612 0.86179 1.20504 0.76175 0.86712 0.83400 1.90763 1.44922 1.17171 1.85269 1.43854 1.68682 1.14079 1.05973 1.17880 0.96099 0.92782 0.86964 1.21280 1.00975 0.93900 0.98332 1.21049 0.97886 0.99769 0.93171 1.21071 1.01080 0.94945 0.99365 1.20888 0.99647 0.94560 0.97081 1.20889 1.00916 1.00589 0.95023 1.69792 1.10854 0.81513 0.80345 1.92824 1.76753 1.34735 1.82446 1.27675 1.40720 1.25473 1.03444 0.89979 1.24756 0.92611 0.93026 0.98915 1.69890 1.32713 1.24201 1.21974 0.86414 0.80329 0.79744 0.80484 1.19433 1.20537 1.19388 0.92438 0.94308 0.90552 0.75553 0.84682 0.85925 0.86299 0.85997 0.85825 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.91 37.16 0.33 -1.97 16 2 C -0.48 -9.17 3.22 -27.88 -0.09 -9.26 16 3 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 4 C 0.54 10.28 6.74 -10.99 -0.07 10.21 16 5 O -0.51 -11.67 13.40 -1.28 -0.02 -11.69 16 6 N -0.68 -9.93 5.34 -9.86 -0.05 -9.98 16 7 C 0.16 2.31 6.28 -83.69 -0.53 1.78 16 8 C -0.12 -1.97 8.66 -39.39 -0.34 -2.32 16 9 C -0.10 -1.30 10.04 -39.61 -0.40 -1.70 16 10 C -0.15 -1.61 10.04 -39.55 -0.40 -2.01 16 11 C -0.10 -1.09 10.04 -39.61 -0.40 -1.49 16 12 C -0.15 -1.80 9.96 -39.39 -0.39 -2.19 16 13 S 1.38 33.98 11.95 -107.50 -1.28 32.70 16 14 O -0.87 -27.20 17.26 -42.06 -0.73 -27.93 16 15 C -0.83 -21.90 8.74 30.60 0.27 -21.64 16 16 H 0.08 2.03 6.66 -52.48 -0.35 1.68 16 17 C 0.12 3.25 5.46 -17.82 -0.10 3.16 16 18 N -0.85 -24.22 13.15 55.43 0.73 -23.49 16 19 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 23 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 1.50 6.51 -51.93 -0.34 1.16 16 26 H 0.41 4.48 8.82 -40.82 -0.36 4.12 16 27 H 0.14 2.48 6.43 -52.49 -0.34 2.14 16 28 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 29 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 293.38 15.07 4.42 4.42 Total: -1.00 -36.07 293.38 -7.54 -43.61 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -3.48 Total: 4.49 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -2.11 Total: -27.42 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.68 Total: -33.47 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.74 Total: -39.61 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 33.98 SS G_CDS: -1.28 Total: 32.70 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.07 -7.54 -43.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526838894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.716 kcal (2) G-P(sol) polarization free energy of solvation -36.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds