Wall clock time and date at job start Mon Mar 30 2020 05:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47388 * 2 1 4 4 C 1.50694 * 109.46899 * 120.00567 * 2 1 3 5 5 O 1.21291 * 120.00100 * 99.99741 * 4 2 1 6 6 N 1.34776 * 119.99944 * 279.71595 * 4 2 1 7 7 C 1.39931 * 120.00030 * 175.00149 * 6 4 2 8 8 C 1.38875 * 120.07163 * 326.56244 * 7 6 4 9 9 C 1.38105 * 119.92498 * 179.76266 * 8 7 6 10 10 C 1.38283 * 120.07569 * 0.48567 * 9 8 7 11 11 C 1.38283 * 120.13853 * 359.76394 * 10 9 8 12 12 C 1.38115 * 120.06984 * 0.02562 * 11 10 9 13 13 S 1.81405 * 109.46688 * 240.00168 * 2 1 3 14 14 O 1.42096 * 109.47017 * 305.94492 * 13 2 1 15 15 C 1.76195 * 103.00231 * 55.00524 * 13 2 1 16 16 H 1.08005 * 119.99958 * 359.97438 * 15 13 2 17 17 C 1.37876 * 120.00248 * 179.97438 * 15 13 2 18 18 N 1.31511 * 120.00014 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 119.99870 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46987 * 90.00364 * 19 17 15 21 21 H 1.48502 * 109.46858 * 210.00067 * 19 17 15 22 22 H 1.48496 * 109.47263 * 330.00216 * 19 17 15 23 23 H 1.08998 * 109.47523 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46591 * 300.00302 * 1 2 3 25 25 H 1.09003 * 109.46985 * 59.99369 * 1 2 3 26 26 H 0.96999 * 119.99857 * 355.01478 * 6 4 2 27 27 H 1.07999 * 120.03437 * 359.97243 * 8 7 6 28 28 H 1.08003 * 119.96293 * 180.25282 * 9 8 7 29 29 H 1.07996 * 119.93393 * 179.74344 * 10 9 8 30 30 H 1.08004 * 119.96480 * 179.97438 * 11 10 9 31 31 H 1.08000 * 120.03270 * 179.97438 * 12 11 10 32 32 H 0.96991 * 120.00162 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4063 -1.8619 1.1556 6 7 2.0712 -0.0648 2.4127 7 6 2.4377 -0.7535 3.5743 8 6 2.1040 -2.0933 3.7236 9 6 2.4715 -2.7714 4.8691 10 6 3.1624 -2.1152 5.8713 11 6 3.4917 -0.7799 5.7280 12 6 3.1308 -0.0971 4.5829 13 16 2.1346 -0.8551 -1.4812 14 8 1.5510 -2.1487 -1.5527 15 6 1.3384 0.0119 -2.7922 16 1 0.6765 0.8362 -2.5709 17 6 1.5603 -0.3618 -4.1007 18 7 2.3658 -1.3658 -4.3703 19 14 0.7155 0.5571 -5.4905 20 1 1.5725 1.6878 -5.9291 21 1 0.4932 -0.3670 -6.6316 22 1 -0.5904 1.0808 -5.0159 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8449 0.8773 2.4585 27 1 1.5605 -2.6052 2.9431 28 1 2.2159 -3.8144 4.9841 29 1 3.4451 -2.6467 6.7680 30 1 4.0309 -0.2700 6.5127 31 1 3.3879 0.9459 4.4718 32 1 2.5221 -1.6285 -5.2907 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526838894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:57 Heat of formation + Delta-G solvation = -84.511789 kcal Electronic energy + Delta-G solvation = -17622.641575 eV Core-core repulsion = 14673.359871 eV Total energy + Delta-G solvation = -2949.281704 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.52612 -39.38863 -35.86854 -35.73158 -34.84290 -34.01632 -31.81295 -30.31201 -27.87411 -25.77845 -23.89030 -23.15875 -21.39255 -20.18297 -18.81501 -18.01898 -17.39093 -17.28549 -16.81037 -16.41865 -15.76675 -15.43630 -15.27947 -14.96734 -14.64644 -14.25917 -13.96523 -13.64720 -13.47082 -13.42821 -13.04526 -12.89331 -12.69785 -12.60958 -12.29505 -12.15177 -12.01974 -11.39762 -11.03421 -10.87931 -10.31522 -9.84818 -9.09329 -8.86808 -8.31868 -6.91240 0.31869 0.48248 1.27118 1.38204 1.46307 1.52645 1.69108 2.17742 2.29280 2.83811 2.92182 3.30136 3.77200 3.91360 4.05721 4.09920 4.32433 4.32724 4.35125 4.55313 4.59770 4.63404 4.68855 4.82113 5.06815 5.13031 5.39692 5.43009 5.45410 5.58929 5.64266 6.12446 6.13784 6.40321 7.02773 7.12761 8.47208 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.052297 B = 0.004387 C = 0.004246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.270671 B = 6381.134943 C = 6592.516656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.466 4.466 3 H 0.173 0.827 4 C 0.542 3.458 5 O -0.558 6.558 6 N -0.657 5.657 7 C 0.129 3.871 8 C -0.158 4.158 9 C -0.113 4.113 10 C -0.138 4.138 11 C -0.097 4.097 12 C -0.143 4.143 13 S 1.385 4.615 14 O -0.955 6.955 15 C -0.847 4.847 16 H 0.095 0.905 17 C 0.063 3.937 18 N -0.896 5.896 19 Si 0.973 3.027 20 H -0.242 1.242 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.015 0.985 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.429 0.571 27 H 0.094 0.906 28 H 0.131 0.869 29 H 0.151 0.849 30 H 0.162 0.838 31 H 0.156 0.844 32 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 9.680 17.591 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.580 4.580 3 H 0.191 0.809 4 C 0.331 3.669 5 O -0.436 6.436 6 N -0.303 5.303 7 C 0.034 3.966 8 C -0.179 4.179 9 C -0.132 4.132 10 C -0.156 4.156 11 C -0.116 4.116 12 C -0.163 4.163 13 S 1.583 4.417 14 O -0.950 6.950 15 C -0.987 4.987 16 H 0.113 0.887 17 C -0.146 4.146 18 N -0.530 5.530 19 Si 0.794 3.206 20 H -0.166 1.166 21 H -0.208 1.208 22 H -0.192 1.192 23 H 0.035 0.965 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.268 0.732 27 H 0.112 0.888 28 H 0.149 0.851 29 H 0.169 0.831 30 H 0.180 0.820 31 H 0.174 0.826 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.410 7.992 17.365 19.618 hybrid contribution -3.028 0.154 -1.194 3.259 sum 1.381 8.146 16.171 18.159 Atomic orbital electron populations 1.21443 0.91761 1.00478 1.03801 1.28257 1.03842 1.13857 1.12084 0.80905 1.20360 0.75960 0.86026 0.84571 1.90766 1.47436 1.19320 1.86056 1.43449 1.67414 1.14750 1.04731 1.18094 0.98141 0.92639 0.87684 1.21180 1.02788 0.95143 0.98755 1.21243 0.98474 1.00441 0.93039 1.21486 0.99193 0.95528 0.99419 1.21413 0.98477 0.94310 0.97366 1.21253 0.99068 1.01997 0.93993 1.68619 1.11472 0.80080 0.81514 1.92741 1.78918 1.38507 1.84813 1.27944 1.40935 1.25689 1.04167 0.88720 1.25790 0.93125 0.93829 1.01903 1.70011 1.34254 1.25943 1.22761 0.85376 0.79421 0.78949 0.76827 1.16605 1.20800 1.19162 0.96540 0.89901 0.90881 0.73167 0.88824 0.85145 0.83117 0.82024 0.82589 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.42 8.91 71.98 0.64 -3.78 16 2 C -0.47 -17.43 3.22 29.85 0.10 -17.34 16 3 H 0.17 4.59 8.14 -2.39 -0.02 4.58 16 4 C 0.54 20.67 6.74 87.66 0.59 21.26 16 5 O -0.56 -27.16 13.40 3.47 0.05 -27.11 16 6 N -0.66 -18.14 5.34 -303.50 -1.62 -19.76 16 7 C 0.13 3.61 6.28 38.15 0.24 3.85 16 8 C -0.16 -5.18 8.66 22.39 0.19 -4.99 16 9 C -0.11 -2.91 10.04 22.25 0.22 -2.69 16 10 C -0.14 -2.61 10.04 22.29 0.22 -2.39 16 11 C -0.10 -1.62 10.04 22.25 0.22 -1.40 16 12 C -0.14 -2.81 9.96 22.39 0.22 -2.59 16 13 S 1.39 70.45 11.95 -56.49 -0.67 69.78 16 14 O -0.95 -63.31 17.26 -142.45 -2.46 -65.76 16 15 C -0.85 -44.90 8.74 67.73 0.59 -44.31 16 16 H 0.09 4.60 6.66 -2.91 -0.02 4.58 16 17 C 0.06 3.43 5.46 84.66 0.46 3.90 16 18 N -0.90 -52.25 13.15 21.45 0.28 -51.97 16 19 Si 0.97 41.34 29.54 68.60 2.03 43.36 16 20 H -0.24 -9.21 7.11 99.48 0.71 -8.50 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 24 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.07 2.80 6.51 -2.39 -0.02 2.78 16 26 H 0.43 7.92 8.82 -92.71 -0.82 7.11 16 27 H 0.09 3.80 6.43 -2.91 -0.02 3.78 16 28 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 29 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 30 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 31 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.28 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -85.16 293.38 1.64 -83.53 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: 0.33 Total: 18.41 kcal Atomic # 6 Polarization: -54.19 SS G_CDS: 3.71 Total: -50.48 kcal Atomic # 7 Polarization: -70.39 SS G_CDS: -1.34 Total: -71.73 kcal Atomic # 8 Polarization: -90.46 SS G_CDS: -2.41 Total: -92.88 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 70.45 SS G_CDS: -0.67 Total: 69.78 kcal Total: -85.16 1.64 -83.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526838894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.984 kcal (2) G-P(sol) polarization free energy of solvation -85.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds