Wall clock time and date at job start Mon Mar 30 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38141 * 120.03807 * 2 1 4 4 C 1.38264 * 120.06981 * 179.97438 * 3 2 1 5 5 C 1.38302 * 120.13986 * 0.04279 * 4 3 2 6 6 C 1.38091 * 120.07221 * 359.67911 * 5 4 3 7 7 C 1.38857 * 120.03681 * 179.97438 * 2 1 3 8 8 N 1.39929 * 120.06352 * 0.02728 * 7 2 1 9 9 C 1.34777 * 119.99468 * 155.43804 * 8 7 2 10 10 O 1.21286 * 120.00474 * 354.46855 * 9 8 7 11 11 C 1.50704 * 119.99662 * 174.47562 * 9 8 7 12 12 S 1.81400 * 109.46829 * 179.97438 * 11 9 8 13 13 O 1.42103 * 109.47213 * 289.05289 * 12 11 9 14 14 C 1.76199 * 102.99702 * 180.02562 * 12 11 9 15 15 H 1.07996 * 120.00412 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99729 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00334 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99747 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47104 * 90.00327 * 18 16 14 20 20 H 1.48505 * 109.46873 * 210.00138 * 18 16 14 21 21 H 1.48497 * 109.47318 * 330.00235 * 18 16 14 22 22 H 1.09004 * 109.47243 * 270.02574 * 1 2 3 23 23 H 1.09004 * 109.46976 * 30.01725 * 1 2 3 24 24 H 1.08996 * 109.47696 * 150.02533 * 1 2 3 25 25 H 1.07996 * 119.96282 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.92535 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.96158 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.03136 * 180.31639 * 6 5 4 29 29 H 0.96997 * 120.00340 * 335.42866 * 8 7 2 30 30 H 1.08998 * 109.47209 * 59.99747 * 11 9 8 31 31 H 1.08998 * 109.46923 * 299.99209 * 11 9 8 32 32 H 0.96999 * 119.99668 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2762 0.0010 0.0002 6 6 3.5908 -1.1978 0.0060 7 6 2.2020 -1.2021 0.0005 8 7 1.5045 -2.4151 0.0005 9 6 2.0892 -3.5285 -0.4842 10 8 3.1793 -3.4607 -1.0115 11 6 1.3882 -4.8579 -0.3712 12 16 2.4226 -6.1516 -1.1109 13 8 2.4417 -5.9932 -2.5229 14 6 1.4552 -7.6074 -0.8891 15 1 0.4930 -7.5476 -0.4023 16 6 1.9266 -8.8232 -1.3372 17 7 3.0985 -8.8963 -1.9297 18 14 0.9012 -10.3668 -1.1015 19 1 0.0156 -10.5573 -2.2782 20 1 1.7995 -11.5413 -0.9628 21 1 0.0736 -10.2291 0.1237 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8899 -0.5141 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6585 2.1312 -0.0004 26 1 4.1193 2.1329 0.0010 27 1 5.3561 0.0049 0.0002 28 1 4.1343 -2.1311 0.0109 29 1 0.6003 -2.4547 0.3494 30 1 0.4342 -4.8114 -0.8964 31 1 1.2137 -5.0884 0.6797 32 1 3.4302 -9.7517 -2.2445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526868751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:11 Heat of formation + Delta-G solvation = -58.779406 kcal Electronic energy + Delta-G solvation = -17380.013372 eV Core-core repulsion = 14431.847508 eV Total energy + Delta-G solvation = -2948.165864 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41583 -38.29157 -34.66703 -33.65339 -32.80820 -32.54447 -30.47511 -28.36320 -26.74608 -25.79207 -22.97682 -21.31574 -20.24496 -18.25744 -17.52320 -16.60419 -15.76690 -15.38435 -15.32971 -14.95615 -14.52760 -14.06415 -13.87608 -13.55910 -13.22451 -13.07938 -12.59221 -12.47224 -12.42349 -11.98951 -11.50571 -11.42867 -11.20719 -11.17525 -10.82775 -10.56597 -10.33754 -10.24670 -9.45239 -9.07163 -8.66975 -8.42006 -7.89903 -6.89652 -6.32037 -4.83763 1.34631 1.47382 2.94029 3.03641 3.13051 3.19451 3.24860 3.67135 3.89904 4.13657 4.77513 4.84162 4.85812 4.98500 5.15798 5.21438 5.43133 5.46255 5.55057 5.62317 5.66377 5.76089 5.89233 6.13220 6.20753 6.31863 6.37417 6.48811 6.59625 6.67124 7.16316 7.44863 7.54657 8.15132 8.39121 9.06844 10.45839 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.046433 B = 0.004158 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.880438 B = 6732.996491 C = 7145.458034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.146 4.146 5 C -0.103 4.103 6 C -0.131 4.131 7 C 0.158 3.842 8 N -0.676 5.676 9 C 0.545 3.455 10 O -0.511 6.511 11 C -0.520 4.520 12 S 1.391 4.609 13 O -0.887 6.887 14 C -0.839 4.839 15 H 0.079 0.921 16 C 0.121 3.879 17 N -0.853 5.853 18 Si 0.906 3.094 19 H -0.274 1.274 20 H -0.277 1.277 21 H -0.266 1.266 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.151 0.849 29 H 0.409 0.591 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.830 15.245 9.571 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.165 4.165 5 C -0.122 4.122 6 C -0.151 4.151 7 C 0.062 3.938 8 N -0.321 5.321 9 C 0.334 3.666 10 O -0.386 6.386 11 C -0.649 4.649 12 S 1.583 4.417 13 O -0.882 6.882 14 C -0.980 4.980 15 H 0.098 0.902 16 C -0.093 4.093 17 N -0.486 5.486 18 Si 0.731 3.269 19 H -0.200 1.200 20 H -0.202 1.202 21 H -0.190 1.190 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.142 0.858 28 H 0.168 0.832 29 H 0.245 0.755 30 H 0.116 0.884 31 H 0.145 0.855 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.079 15.265 8.684 17.562 hybrid contribution -3.314 -0.891 -0.710 3.504 sum -3.393 14.374 7.974 16.784 Atomic orbital electron populations 1.20709 0.91292 1.02926 1.02114 1.19606 0.95889 0.91954 1.05650 1.20756 0.94193 0.96561 1.00560 1.21047 0.94170 0.98001 1.03246 1.21063 0.99923 0.91953 0.99251 1.21532 0.92582 1.00146 1.00822 1.17771 0.91788 0.84937 0.99261 1.43884 1.18670 1.07135 1.62423 1.20431 0.85730 0.84740 0.75689 1.90665 1.20926 1.86097 1.40915 1.28783 1.14749 1.08651 1.12681 1.69995 0.97405 0.80816 0.93440 1.92803 1.79907 1.83776 1.31692 1.27691 1.16406 1.06726 1.47168 0.90233 1.24762 0.94270 0.99558 0.90727 1.69897 1.17475 1.27807 1.33403 0.86403 0.80366 0.80908 0.79246 1.19991 1.20189 1.18978 0.91258 0.91254 0.91837 0.86145 0.86350 0.85837 0.83172 0.75532 0.88384 0.85487 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.45 36.00 0.34 -0.74 16 2 C -0.13 -1.59 5.90 -104.43 -0.62 -2.20 16 3 C -0.10 -1.14 9.70 -39.61 -0.38 -1.52 16 4 C -0.15 -1.64 10.04 -39.55 -0.40 -2.03 16 5 C -0.10 -1.32 10.04 -39.61 -0.40 -1.71 16 6 C -0.13 -2.01 8.72 -39.40 -0.34 -2.35 16 7 C 0.16 2.35 6.41 -83.69 -0.54 1.81 16 8 N -0.68 -10.04 4.98 -9.86 -0.05 -10.09 16 9 C 0.54 10.19 7.65 -10.98 -0.08 10.10 16 10 O -0.51 -11.16 13.03 5.55 0.07 -11.08 16 11 C -0.52 -9.86 6.37 36.01 0.23 -9.63 16 12 S 1.39 34.57 12.12 -107.50 -1.30 33.26 16 13 O -0.89 -28.09 17.81 -35.23 -0.63 -28.72 16 14 C -0.84 -22.57 9.38 30.60 0.29 -22.29 16 15 H 0.08 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.12 3.30 5.46 -17.82 -0.10 3.21 16 17 N -0.85 -24.38 13.15 55.43 0.73 -23.65 16 18 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 19 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 25 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 26 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.15 2.53 5.79 -52.48 -0.30 2.22 16 29 H 0.41 4.74 7.39 -40.82 -0.30 4.44 16 30 H 0.10 1.87 8.14 -51.92 -0.42 1.45 16 31 H 0.13 1.92 8.14 -51.93 -0.42 1.50 16 32 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -36.47 294.04 -7.24 -43.71 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -3.47 Total: 4.09 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -2.00 Total: -27.36 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.68 Total: -33.74 kcal Atomic # 8 Polarization: -39.25 SS G_CDS: -0.56 Total: -39.80 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 34.57 SS G_CDS: -1.30 Total: 33.26 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -36.47 -7.24 -43.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.072 kcal (2) G-P(sol) polarization free energy of solvation -36.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds