Wall clock time and date at job start Mon Mar 30 2020 04:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38141 * 120.03807 * 2 1 4 4 C 1.38264 * 120.06981 * 179.97438 * 3 2 1 5 5 C 1.38302 * 120.13986 * 0.04279 * 4 3 2 6 6 C 1.38091 * 120.07221 * 359.67911 * 5 4 3 7 7 C 1.38857 * 120.03681 * 179.97438 * 2 1 3 8 8 N 1.39929 * 120.06352 * 0.02728 * 7 2 1 9 9 C 1.34777 * 119.99468 * 155.43804 * 8 7 2 10 10 O 1.21286 * 120.00474 * 354.46855 * 9 8 7 11 11 C 1.50704 * 119.99662 * 174.47562 * 9 8 7 12 12 S 1.81400 * 109.46829 * 179.97438 * 11 9 8 13 13 O 1.42103 * 109.47213 * 289.05289 * 12 11 9 14 14 C 1.76199 * 102.99702 * 180.02562 * 12 11 9 15 15 H 1.07996 * 120.00412 * 359.97438 * 14 12 11 16 16 C 1.37879 * 119.99729 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00334 * 0.02562 * 16 14 12 18 18 Si 1.86806 * 119.99747 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47104 * 90.00327 * 18 16 14 20 20 H 1.48505 * 109.46873 * 210.00138 * 18 16 14 21 21 H 1.48497 * 109.47318 * 330.00235 * 18 16 14 22 22 H 1.09004 * 109.47243 * 270.02574 * 1 2 3 23 23 H 1.09004 * 109.46976 * 30.01725 * 1 2 3 24 24 H 1.08996 * 109.47696 * 150.02533 * 1 2 3 25 25 H 1.07996 * 119.96282 * 359.97438 * 3 2 1 26 26 H 1.07998 * 119.92535 * 180.02562 * 4 3 2 27 27 H 1.07997 * 119.96158 * 179.97438 * 5 4 3 28 28 H 1.08003 * 120.03136 * 180.31639 * 6 5 4 29 29 H 0.96997 * 120.00340 * 335.42866 * 8 7 2 30 30 H 1.08998 * 109.47209 * 59.99747 * 11 9 8 31 31 H 1.08998 * 109.46923 * 299.99209 * 11 9 8 32 32 H 0.96999 * 119.99668 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1959 0.0000 4 6 3.5811 1.1966 0.0005 5 6 4.2762 0.0010 0.0002 6 6 3.5908 -1.1978 0.0060 7 6 2.2020 -1.2021 0.0005 8 7 1.5045 -2.4151 0.0005 9 6 2.0892 -3.5285 -0.4842 10 8 3.1793 -3.4607 -1.0115 11 6 1.3882 -4.8579 -0.3712 12 16 2.4226 -6.1516 -1.1109 13 8 2.4417 -5.9932 -2.5229 14 6 1.4552 -7.6074 -0.8891 15 1 0.4930 -7.5476 -0.4023 16 6 1.9266 -8.8232 -1.3372 17 7 3.0985 -8.8963 -1.9297 18 14 0.9012 -10.3668 -1.1015 19 1 0.0156 -10.5573 -2.2782 20 1 1.7995 -11.5413 -0.9628 21 1 0.0736 -10.2291 0.1237 22 1 -0.3634 0.0005 1.0277 23 1 -0.3633 0.8899 -0.5141 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6585 2.1312 -0.0004 26 1 4.1193 2.1329 0.0010 27 1 5.3561 0.0049 0.0002 28 1 4.1343 -2.1311 0.0109 29 1 0.6003 -2.4547 0.3494 30 1 0.4342 -4.8114 -0.8964 31 1 1.2137 -5.0884 0.6797 32 1 3.4302 -9.7517 -2.2445 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526868751.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:11 Heat of formation + Delta-G solvation = -86.025225 kcal Electronic energy + Delta-G solvation = -17381.194839 eV Core-core repulsion = 14431.847508 eV Total energy + Delta-G solvation = -2949.347331 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.64740 -39.49467 -35.93186 -35.83371 -34.87827 -33.48164 -31.79170 -29.63897 -27.91336 -27.60538 -24.11223 -22.30345 -21.57681 -20.14570 -18.72842 -18.06654 -17.44428 -17.03637 -16.68773 -16.54085 -15.76641 -15.42069 -15.19118 -14.77051 -14.69604 -14.36735 -14.12065 -13.92161 -13.43942 -13.25476 -13.07654 -12.96511 -12.88812 -12.39927 -12.37223 -12.12711 -12.07922 -11.53354 -11.11037 -10.87354 -10.49205 -9.63654 -8.99318 -8.90954 -8.35580 -6.95617 0.31495 0.48413 1.26091 1.36211 1.46478 1.54232 1.59010 2.15977 2.27008 2.80754 2.90294 3.26550 3.81817 3.91145 3.96807 4.00654 4.27971 4.42070 4.49103 4.55598 4.61597 4.70894 4.79353 4.82764 5.03598 5.27058 5.37949 5.40024 5.47745 5.60025 5.67037 6.08759 6.15027 6.34739 6.98921 7.04023 8.44502 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.046433 B = 0.004158 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.880438 B = 6732.996491 C = 7145.458034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.126 4.126 3 C -0.103 4.103 4 C -0.138 4.138 5 C -0.115 4.115 6 C -0.159 4.159 7 C 0.124 3.876 8 N -0.656 5.656 9 C 0.541 3.459 10 O -0.552 6.552 11 C -0.500 4.500 12 S 1.392 4.608 13 O -0.969 6.969 14 C -0.859 4.859 15 H 0.091 0.909 16 C 0.062 3.938 17 N -0.893 5.893 18 Si 0.975 3.025 19 H -0.281 1.281 20 H -0.262 1.262 21 H -0.245 1.245 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.155 0.845 26 H 0.150 0.850 27 H 0.138 0.862 28 H 0.124 0.876 29 H 0.425 0.575 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 16.915 11.352 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.129 4.129 3 C -0.121 4.121 4 C -0.157 4.157 5 C -0.133 4.133 6 C -0.179 4.179 7 C 0.030 3.970 8 N -0.302 5.302 9 C 0.330 3.670 10 O -0.430 6.430 11 C -0.634 4.634 12 S 1.591 4.409 13 O -0.963 6.963 14 C -1.000 5.000 15 H 0.110 0.890 16 C -0.148 4.148 17 N -0.527 5.527 18 Si 0.796 3.204 19 H -0.207 1.207 20 H -0.186 1.186 21 H -0.168 1.168 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.075 0.925 25 H 0.173 0.827 26 H 0.168 0.832 27 H 0.156 0.844 28 H 0.142 0.858 29 H 0.264 0.736 30 H 0.121 0.879 31 H 0.190 0.810 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.061 16.936 10.475 20.020 hybrid contribution -2.729 -1.156 -1.157 3.182 sum -4.791 15.780 9.317 18.942 Atomic orbital electron populations 1.20800 0.89121 1.03528 1.03628 1.19987 0.97556 0.91273 1.04069 1.21224 0.94394 0.97421 0.99081 1.21465 0.94647 0.98481 1.01064 1.21303 1.00904 0.91816 0.99313 1.21519 0.93350 1.00249 1.02794 1.18002 0.91851 0.85485 1.01697 1.43511 1.19103 1.06318 1.61278 1.20291 0.85287 0.85587 0.75866 1.90674 1.22678 1.86660 1.42986 1.28297 1.13298 1.07116 1.14676 1.68890 0.99056 0.81506 0.91418 1.92713 1.82859 1.85772 1.35004 1.27997 1.17010 1.07599 1.47366 0.89029 1.25835 0.95389 1.03337 0.90224 1.70010 1.19265 1.28978 1.34411 0.85344 0.78734 0.76834 0.79474 1.20741 1.18610 1.16804 0.89180 0.89472 0.92451 0.82745 0.83182 0.84435 0.85817 0.73629 0.87887 0.80981 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.45 71.23 0.67 -1.11 16 2 C -0.13 -2.82 5.90 -19.74 -0.12 -2.93 16 3 C -0.10 -1.94 9.70 22.25 0.22 -1.72 16 4 C -0.14 -2.71 10.04 22.29 0.22 -2.48 16 5 C -0.11 -2.84 10.04 22.25 0.22 -2.62 16 6 C -0.16 -4.99 8.72 22.39 0.20 -4.79 16 7 C 0.12 3.61 6.41 38.15 0.24 3.86 16 8 N -0.66 -18.99 4.98 -303.50 -1.51 -20.50 16 9 C 0.54 20.42 7.65 87.66 0.67 21.09 16 10 O -0.55 -25.27 13.03 -3.05 -0.04 -25.31 16 11 C -0.50 -18.65 6.37 71.24 0.45 -18.20 16 12 S 1.39 71.42 12.12 -56.49 -0.68 70.74 16 13 O -0.97 -64.37 17.81 -148.98 -2.65 -67.02 16 14 C -0.86 -46.45 9.38 67.73 0.64 -45.81 16 15 H 0.09 4.54 7.81 -2.91 -0.02 4.52 16 16 C 0.06 3.41 5.46 84.65 0.46 3.88 16 17 N -0.89 -52.35 13.15 21.45 0.28 -52.07 16 18 Si 0.98 41.49 29.54 68.60 2.03 43.51 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 22 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 23 H 0.09 1.08 8.09 -2.38 -0.02 1.06 16 24 H 0.06 0.98 6.98 -2.39 -0.02 0.96 16 25 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 26 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 27 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 28 H 0.12 4.48 5.79 -2.91 -0.02 4.47 16 29 H 0.42 9.05 7.39 -92.71 -0.69 8.37 16 30 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 31 H 0.17 4.79 8.14 -2.39 -0.02 4.77 16 32 H 0.29 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -83.09 294.04 1.76 -81.33 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.46 Total: 20.17 kcal Atomic # 6 Polarization: -54.72 SS G_CDS: 3.88 Total: -50.84 kcal Atomic # 7 Polarization: -71.34 SS G_CDS: -1.23 Total: -72.57 kcal Atomic # 8 Polarization: -89.64 SS G_CDS: -2.69 Total: -92.33 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: 71.42 SS G_CDS: -0.68 Total: 70.74 kcal Total: -83.09 1.76 -81.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526868751.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.697 kcal (2) G-P(sol) polarization free energy of solvation -83.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds