Wall clock time and date at job start Mon Mar 30 2020 04:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.38446 * 120.07394 * 63.67973 * 3 2 1 5 5 C 1.40887 * 119.91890 * 179.69985 * 4 3 2 6 6 C 1.41081 * 119.96462 * 180.32230 * 5 4 3 7 7 H 1.08002 * 119.99856 * 204.98209 * 6 5 4 8 8 C 1.40310 * 119.99856 * 24.97411 * 6 5 4 9 9 N 1.30589 * 120.00235 * 17.77655 * 8 6 5 10 10 Si 1.86803 * 119.99693 * 197.77111 * 8 6 5 11 11 H 1.48498 * 109.47167 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46719 * 120.00645 * 10 8 6 13 13 H 1.48508 * 109.46897 * 240.00010 * 10 8 6 14 14 C 1.40729 * 120.06709 * 0.59428 * 5 4 3 15 15 C 1.38036 * 120.15426 * 359.67932 * 14 5 4 16 16 O 1.35648 * 119.96317 * 180.02562 * 15 14 5 17 17 C 1.42895 * 116.99793 * 359.97438 * 16 15 14 18 18 F 1.39900 * 109.47188 * 299.99510 * 17 16 15 19 19 F 1.39897 * 109.47457 * 59.99867 * 17 16 15 20 20 C 1.40611 * 120.07561 * 0.02562 * 15 14 5 21 21 C 1.46420 * 120.03721 * 179.97438 * 20 15 14 22 22 O 1.21355 * 120.00229 * 180.02562 * 21 20 15 23 23 H 1.07997 * 120.04395 * 359.97438 * 4 3 2 24 24 H 0.96999 * 120.00034 * 179.97438 * 9 8 6 25 25 H 1.08006 * 119.92007 * 179.70796 * 14 5 4 26 26 H 1.09011 * 109.47036 * 179.97438 * 17 16 15 27 27 H 1.08004 * 119.99937 * 0.02562 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2620 -0.5303 -1.0739 5 6 4.6709 -0.5222 -1.0733 6 6 5.3790 -1.0568 -2.1702 7 1 6.3853 -1.4252 -2.0355 8 6 4.7759 -1.1100 -3.4359 9 7 3.7284 -0.3734 -3.6916 10 14 5.4717 -2.2345 -4.7554 11 1 6.6515 -2.9581 -4.2174 12 1 4.4352 -3.2151 -5.1668 13 1 5.8809 -1.4243 -5.9308 14 6 5.3725 0.0133 0.0228 15 6 4.6835 0.5383 1.0976 16 8 5.3636 1.0540 2.1518 17 6 6.7905 1.0202 2.0824 18 9 7.2207 -0.3063 1.9702 19 9 7.2205 1.7460 0.9664 20 6 3.2774 0.5391 1.1008 21 6 2.5474 1.0956 2.2415 22 8 1.3338 1.0956 2.2439 23 1 2.7242 -0.9461 -1.9130 24 1 3.3117 -0.4099 -4.5668 25 1 6.4525 0.0140 0.0228 26 1 7.2088 1.4629 2.9865 27 1 3.0890 1.5062 3.0809 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575638657.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:57 Heat of formation + Delta-G solvation = -154.621515 kcal Electronic energy + Delta-G solvation = -19626.837774 eV Core-core repulsion = 15984.842403 eV Total energy + Delta-G solvation = -3641.995371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.07652 -48.08459 -40.95381 -39.41961 -38.42823 -37.20684 -35.54966 -32.44646 -31.23105 -28.35848 -26.84439 -25.19463 -23.66368 -22.14371 -20.88247 -19.13420 -18.66229 -18.61405 -18.22819 -17.11885 -16.95899 -16.80878 -15.79446 -15.67956 -15.19606 -14.99092 -14.98639 -14.55169 -14.38217 -14.36157 -14.24268 -13.99489 -13.80817 -13.64885 -13.37509 -12.95381 -12.85529 -12.64887 -12.18181 -11.91826 -11.81036 -11.19425 -10.41335 -9.77025 -9.26517 -8.96695 -6.67662 -0.21697 0.56461 1.31502 1.41898 1.58580 1.65312 1.82006 1.96936 2.11090 2.13785 2.69139 2.78590 3.18651 3.43816 3.70069 3.77707 3.91381 4.29839 4.47642 4.67941 4.77870 4.92840 5.01144 5.24858 5.54444 5.60950 5.79337 6.02154 6.27827 6.53130 6.59513 6.63834 6.81370 7.96920 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.013995 B = 0.008973 C = 0.005742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2000.173192 B = 3119.757681 C = 4875.511696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.288 3.712 3 C 0.042 3.958 4 C -0.137 4.137 5 C 0.121 3.879 6 C -0.428 4.428 7 H 0.105 0.895 8 C 0.035 3.965 9 N -0.783 5.783 10 Si 0.991 3.009 11 H -0.247 1.247 12 H -0.264 1.264 13 H -0.262 1.262 14 C -0.306 4.306 15 C 0.205 3.795 16 O -0.324 6.324 17 C 0.406 3.594 18 F -0.211 7.211 19 F -0.212 7.212 20 C -0.326 4.326 21 C 0.390 3.610 22 O -0.541 6.541 23 H 0.120 0.880 24 H 0.304 0.696 25 H 0.128 0.872 26 H 0.243 0.757 27 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.571 0.509 4.713 12.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.026 4.026 3 C 0.038 3.962 4 C -0.159 4.159 5 C 0.117 3.883 6 C -0.454 4.454 7 H 0.123 0.877 8 C -0.187 4.187 9 N -0.405 5.405 10 Si 0.810 3.190 11 H -0.170 1.170 12 H -0.189 1.189 13 H -0.187 1.187 14 C -0.326 4.326 15 C 0.160 3.840 16 O -0.241 6.241 17 C 0.317 3.683 18 F -0.193 7.193 19 F -0.194 7.194 20 C -0.331 4.331 21 C 0.259 3.741 22 O -0.422 6.422 23 H 0.138 0.862 24 H 0.116 0.884 25 H 0.146 0.854 26 H 0.259 0.741 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.991 0.681 4.698 10.167 hybrid contribution 0.671 -0.405 -1.044 1.306 sum 9.662 0.276 3.654 10.333 Atomic orbital electron populations 1.80928 1.13029 1.09995 1.10763 1.25863 0.93062 0.92462 0.91163 1.15742 0.82993 1.01495 0.96006 1.21374 0.94752 1.03309 0.96481 1.17634 0.90974 0.87232 0.92450 1.20372 1.02029 1.30628 0.92358 0.87708 1.27124 0.93993 0.95155 1.02441 1.69709 1.16915 1.28705 1.25190 0.84982 0.79764 0.77912 0.76321 1.16962 1.18906 1.18661 1.21432 0.99570 1.13799 0.97846 1.18341 0.89638 0.90668 0.85340 1.86408 1.19907 1.76797 1.40961 1.24384 0.77956 0.75587 0.90386 1.93068 1.89512 1.39796 1.96913 1.93075 1.89533 1.77800 1.59019 1.19256 0.90552 1.22616 1.00681 1.23806 0.88210 0.73554 0.88577 1.90492 1.19070 1.51250 1.81429 0.86201 0.88442 0.85400 0.74121 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -23.66 18.40 19.00 0.35 -23.31 15 2 C 0.29 14.11 12.72 88.33 1.12 15.23 15 3 C 0.04 1.95 5.75 -21.16 -0.12 1.83 15 4 C -0.14 -6.50 8.35 22.97 0.19 -6.31 15 5 C 0.12 5.58 5.57 -21.32 -0.12 5.46 15 6 C -0.43 -18.90 9.04 23.47 0.21 -18.68 15 7 H 0.10 4.30 7.91 -2.91 -0.02 4.28 15 8 C 0.03 1.45 5.13 85.38 0.44 1.88 15 9 N -0.78 -34.89 10.96 21.89 0.24 -34.65 15 10 Si 0.99 31.16 29.60 68.60 2.03 33.19 15 11 H -0.25 -7.44 7.11 99.48 0.71 -6.73 15 12 H -0.26 -8.24 7.11 99.48 0.71 -7.53 15 13 H -0.26 -7.97 7.11 99.48 0.71 -7.27 15 14 C -0.31 -12.71 7.97 22.83 0.18 -12.52 15 15 C 0.20 7.86 6.49 22.80 0.15 8.01 15 16 O -0.32 -9.36 9.57 -89.62 -0.86 -10.22 15 17 C 0.41 8.77 5.97 113.37 0.68 9.45 15 18 F -0.21 -5.55 15.57 44.97 0.70 -4.85 15 19 F -0.21 -5.78 15.57 44.97 0.70 -5.08 15 20 C -0.33 -13.76 5.92 -19.74 -0.12 -13.88 15 21 C 0.39 15.09 11.14 69.95 0.78 15.87 15 22 O -0.54 -25.13 15.10 -3.26 -0.05 -25.18 15 23 H 0.12 5.91 6.16 -2.91 -0.02 5.90 15 24 H 0.30 12.08 8.29 -92.71 -0.77 11.32 15 25 H 0.13 5.00 5.05 -2.91 -0.01 4.98 15 26 H 0.24 1.79 8.14 -2.38 -0.02 1.77 15 27 H 0.13 3.84 7.61 -2.91 -0.02 3.81 15 Total: -1.00 -61.00 263.30 7.76 -53.23 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.26 Total: 10.52 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 3.39 Total: 6.35 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: 0.59 Total: -57.96 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -0.91 Total: -35.40 kcal Atomic # 9 Polarization: -11.34 SS G_CDS: 1.40 Total: -9.94 kcal Atomic # 14 Polarization: 31.16 SS G_CDS: 2.03 Total: 33.19 kcal Total: -61.00 7.76 -53.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575638657.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.387 kcal (2) G-P(sol) polarization free energy of solvation -60.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds