Wall clock time and date at job start Mon Mar 30 2020 04:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39742 * 119.45954 * 226.79659 * 3 2 1 5 5 C 1.39103 * 120.05091 * 179.97438 * 4 3 2 6 6 C 1.46606 * 120.47470 * 180.02562 * 5 4 3 7 7 O 1.21345 * 119.99923 * 174.43651 * 6 5 4 8 8 C 1.46834 * 119.04957 * 0.02562 * 5 4 3 9 9 C 1.40071 * 120.51446 * 179.97438 * 8 5 4 10 10 H 1.08007 * 120.00051 * 321.12235 * 9 8 5 11 11 C 1.40600 * 120.00160 * 141.12700 * 9 8 5 12 12 N 1.30474 * 119.99749 * 335.09104 * 11 9 8 13 13 Si 1.86805 * 120.00191 * 154.81715 * 11 9 8 14 14 H 1.48492 * 109.47183 * 180.27371 * 13 11 9 15 15 H 1.48501 * 109.47144 * 300.27573 * 13 11 9 16 16 H 1.48504 * 109.47041 * 60.27258 * 13 11 9 17 17 C 1.41600 * 118.97112 * 0.25416 * 8 5 4 18 18 O 1.35592 * 120.06463 * 179.74849 * 17 8 5 19 19 C 1.42906 * 116.99489 * 180.02562 * 18 17 8 20 20 F 1.39899 * 109.46733 * 299.99131 * 19 18 17 21 21 F 1.39887 * 109.47605 * 59.99677 * 19 18 17 22 22 C 1.37966 * 119.86169 * 359.48634 * 17 8 5 23 23 H 1.07993 * 119.96943 * 0.02562 * 4 3 2 24 24 H 1.07995 * 120.00293 * 354.43378 * 6 5 4 25 25 H 0.96999 * 119.99859 * 352.85493 * 12 11 9 26 26 H 1.09004 * 109.46377 * 179.97438 * 19 18 17 27 27 H 1.08003 * 119.50419 * 180.25837 * 22 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2549 0.8339 0.8869 5 6 4.6459 0.8440 0.8977 6 6 5.3759 1.7141 1.8247 7 8 6.5851 1.6434 1.8983 8 6 5.3724 -0.0294 -0.0325 9 6 6.7730 -0.0434 -0.0481 10 1 7.3236 0.8776 0.0747 11 6 7.4620 -1.2563 -0.2237 12 7 6.8930 -2.3833 0.1055 13 14 9.1892 -1.2548 -0.9353 14 1 9.6892 -2.6502 -1.0240 15 1 9.1653 -0.6504 -2.2915 16 1 10.0862 -0.4625 -0.0561 17 6 4.6353 -0.8528 -0.9178 18 8 5.2837 -1.6640 -1.7896 19 6 4.4755 -2.4663 -2.6529 20 9 3.6674 -3.3105 -1.8838 21 9 3.6685 -1.6376 -3.4396 22 6 3.2561 -0.8319 -0.8876 23 1 2.7054 1.4699 1.5650 24 1 4.8376 2.4180 2.4420 25 1 6.0392 -2.3793 0.5658 26 1 5.1177 -3.0660 -3.2980 27 1 2.6997 -1.4654 -1.5625 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639563.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:06 Heat of formation + Delta-G solvation = -152.275537 kcal Electronic energy + Delta-G solvation = -20077.121047 eV Core-core repulsion = 16435.227405 eV Total energy + Delta-G solvation = -3641.893642 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.20616 -48.20243 -40.72493 -39.30203 -38.16164 -36.83476 -35.87101 -31.98046 -31.35989 -27.97015 -26.90116 -24.99426 -23.73138 -22.22677 -20.31399 -19.82601 -18.91379 -18.74967 -18.03606 -17.31641 -16.64125 -15.86685 -15.84279 -15.51832 -15.35321 -15.21881 -14.95747 -14.61568 -14.57124 -14.45230 -14.29932 -14.02368 -13.88070 -13.48415 -13.19180 -12.88062 -12.79032 -12.20953 -12.08293 -11.96608 -11.66277 -10.92495 -10.22937 -9.72530 -9.42906 -9.17888 -6.61030 0.05218 0.37575 1.49250 1.55664 1.80400 1.80908 1.84249 2.00142 2.27849 2.28929 2.65318 2.73259 3.24710 3.31985 3.64176 3.81892 3.84170 4.15198 4.27289 4.50480 4.82681 4.99287 5.16327 5.31164 5.51596 5.60792 5.76616 5.96692 6.11225 6.49257 6.63703 6.72937 7.08804 7.80642 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.010334 C = 0.006749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.005297 B = 2708.908298 C = 4147.775646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.298 3.702 3 C -0.182 4.182 4 C 0.036 3.964 5 C -0.316 4.316 6 C 0.381 3.619 7 O -0.517 6.517 8 C 0.086 3.914 9 C -0.426 4.426 10 H 0.096 0.904 11 C 0.010 3.990 12 N -0.739 5.739 13 Si 1.110 2.890 14 H -0.263 1.263 15 H -0.257 1.257 16 H -0.266 1.266 17 C -0.001 4.001 18 O -0.310 6.310 19 C 0.398 3.602 20 F -0.216 7.216 21 F -0.215 7.215 22 C -0.103 4.103 23 H 0.153 0.847 24 H 0.133 0.867 25 H 0.285 0.715 26 H 0.219 0.781 27 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 -0.004 -3.500 4.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.012 4.012 3 C -0.188 4.188 4 C 0.015 3.985 5 C -0.319 4.319 6 C 0.247 3.753 7 O -0.397 6.397 8 C 0.081 3.919 9 C -0.450 4.450 10 H 0.114 0.886 11 C -0.214 4.214 12 N -0.357 5.357 13 Si 0.926 3.074 14 H -0.187 1.187 15 H -0.181 1.181 16 H -0.191 1.191 17 C -0.044 4.044 18 O -0.227 6.227 19 C 0.308 3.692 20 F -0.198 7.198 21 F -0.197 7.197 22 C -0.124 4.124 23 H 0.170 0.830 24 H 0.149 0.851 25 H 0.097 0.903 26 H 0.234 0.766 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.290 -1.113 -3.950 4.699 hybrid contribution -1.732 0.697 0.393 1.908 sum 0.558 -0.416 -3.556 3.624 Atomic orbital electron populations 1.81114 1.12854 1.12560 1.12133 1.25868 0.92574 0.91361 0.91432 1.14965 0.83103 1.11205 1.09509 1.21138 0.92417 0.92217 0.92695 1.21429 0.93223 1.12019 1.05252 1.23854 0.88533 0.82139 0.80765 1.90464 1.19207 1.65377 1.64636 1.18477 0.93329 0.90540 0.89543 1.21217 0.92269 0.98301 1.33256 0.88614 1.28545 1.09544 0.90056 0.93281 1.70346 1.16034 1.29654 1.19668 0.83074 0.68530 0.78115 0.77646 1.18738 1.18104 1.19079 1.18856 0.90065 0.99713 0.95795 1.86632 1.34753 1.53437 1.47889 1.24080 0.81627 0.80934 0.82548 1.93030 1.76791 1.71933 1.78021 1.93031 1.76897 1.74766 1.74961 1.20910 0.92245 0.99645 0.99639 0.82982 0.85140 0.90265 0.76552 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -20.63 18.54 19.00 0.35 -20.28 15 2 C 0.30 11.57 15.27 88.33 1.35 12.92 15 3 C -0.18 -7.07 5.74 -21.29 -0.12 -7.19 15 4 C 0.04 1.27 9.46 22.84 0.22 1.49 15 5 C -0.32 -12.66 6.05 -18.64 -0.11 -12.77 15 6 C 0.38 13.80 11.42 70.01 0.80 14.60 15 7 O -0.52 -22.98 14.71 -3.23 -0.05 -23.03 15 8 C 0.09 3.96 5.11 -19.75 -0.10 3.86 15 9 C -0.43 -20.10 7.38 23.29 0.17 -19.93 15 10 H 0.10 4.69 6.42 -2.91 -0.02 4.67 15 11 C 0.01 0.43 4.24 85.47 0.36 0.79 15 12 N -0.74 -34.12 12.05 21.94 0.26 -33.85 15 13 Si 1.11 37.90 30.01 68.60 2.06 39.96 15 14 H -0.26 -8.64 7.11 99.48 0.71 -7.94 15 15 H -0.26 -8.19 7.11 99.48 0.71 -7.49 15 16 H -0.27 -8.86 7.11 99.48 0.71 -8.15 15 17 C 0.00 -0.05 5.54 23.04 0.13 0.08 15 18 O -0.31 -12.60 7.56 -89.01 -0.67 -13.27 15 19 C 0.40 12.66 5.98 113.37 0.68 13.34 15 20 F -0.22 -7.55 15.55 44.97 0.70 -6.85 15 21 F -0.21 -7.16 15.59 44.97 0.70 -6.46 15 22 C -0.10 -4.26 7.90 22.58 0.18 -4.08 15 23 H 0.15 4.06 8.06 -2.91 -0.02 4.04 15 24 H 0.13 3.26 8.06 -2.91 -0.02 3.23 15 25 H 0.29 14.01 7.29 -92.71 -0.68 13.33 15 26 H 0.22 4.51 8.14 -2.38 -0.02 4.49 15 27 H 0.11 4.60 5.01 -2.91 -0.01 4.59 15 Total: -1.00 -58.15 262.39 8.25 -49.90 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: 1.35 Total: 10.77 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 3.55 Total: 3.11 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: 0.62 Total: -54.14 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.72 Total: -36.30 kcal Atomic # 9 Polarization: -14.71 SS G_CDS: 1.40 Total: -13.31 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.06 Total: 39.96 kcal Total: -58.15 8.25 -49.90 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639563.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.372 kcal (2) G-P(sol) polarization free energy of solvation -58.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds