Wall clock time and date at job start Mon Mar 30 2020 04:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.38824 * 120.45341 * 318.91147 * 3 2 1 5 5 C 1.39875 * 120.06962 * 180.32292 * 4 3 2 6 6 C 1.46953 * 119.49667 * 179.68144 * 5 4 3 7 7 O 1.21302 * 120.00218 * 359.97438 * 6 5 4 8 8 C 1.40051 * 121.00930 * 359.66402 * 5 4 3 9 9 C 1.37826 * 120.91919 * 0.02562 * 8 5 4 10 10 O 1.35627 * 120.06601 * 180.02562 * 9 8 5 11 11 C 1.42904 * 117.00141 * 359.97438 * 10 9 8 12 12 F 1.39901 * 109.46835 * 299.99970 * 11 10 9 13 13 F 1.39899 * 109.47327 * 59.99727 * 11 10 9 14 14 C 1.41626 * 119.86538 * 0.02562 * 9 8 5 15 15 C 1.40173 * 120.48659 * 180.02562 * 14 9 8 16 16 H 1.07992 * 120.00427 * 143.39443 * 15 14 9 17 17 C 1.40609 * 119.99381 * 323.39830 * 15 14 9 18 18 N 1.30467 * 120.00208 * 334.00286 * 17 15 14 19 19 Si 1.86794 * 119.99656 * 153.73653 * 17 15 14 20 20 H 1.48507 * 109.47166 * 180.26914 * 19 17 15 21 21 H 1.48498 * 109.47305 * 300.26955 * 19 17 15 22 22 H 1.48506 * 109.47460 * 60.27306 * 19 17 15 23 23 H 1.08002 * 119.96315 * 0.02562 * 4 3 2 24 24 H 1.07999 * 120.00431 * 179.97438 * 6 5 4 25 25 H 1.07999 * 119.53904 * 180.02562 * 8 5 4 26 26 H 1.08997 * 109.46943 * 179.97438 * 11 10 9 27 27 H 0.97005 * 120.00001 * 352.66978 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2719 -0.9010 0.7865 5 6 4.6706 -0.8888 0.7855 6 6 5.4031 -1.8442 1.6282 7 8 4.7948 -2.6351 2.3181 8 6 5.3837 0.0197 -0.0066 9 6 4.7266 0.9285 -0.8078 10 8 5.4344 1.8003 -1.5684 11 6 6.8591 1.7213 -1.4900 12 9 7.2672 1.9547 -0.1723 13 9 7.2783 0.4477 -1.8893 14 6 3.3108 0.9503 -0.8352 15 6 2.6292 1.8687 -1.6456 16 1 1.7130 1.5784 -2.1382 17 6 3.1385 3.1680 -1.8173 18 7 3.8974 3.6980 -0.8979 19 14 2.7344 4.1326 -3.3650 20 1 3.3930 5.4623 -3.3058 21 1 3.2251 3.3897 -4.5535 22 1 1.2638 4.3128 -3.4663 23 1 2.7390 -1.6094 1.4035 24 1 6.4831 -1.8423 1.6334 25 1 6.4635 0.0080 0.0105 26 1 7.3012 2.4711 -2.1459 27 1 4.0242 3.2417 -0.0513 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575639932.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:55 Heat of formation + Delta-G solvation = -156.524076 kcal Electronic energy + Delta-G solvation = -19964.321584 eV Core-core repulsion = 16322.243712 eV Total energy + Delta-G solvation = -3642.077872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.10678 -48.09344 -40.76900 -39.58537 -38.13890 -36.74685 -36.02406 -32.23860 -31.21545 -28.08960 -26.81552 -24.75269 -24.31511 -22.13206 -20.48450 -19.76965 -18.72608 -18.63232 -18.33065 -17.01814 -16.64985 -16.12603 -16.05994 -15.76178 -15.45420 -15.06107 -14.96662 -14.77611 -14.49984 -14.38573 -14.26739 -14.05464 -13.90518 -13.41691 -13.19752 -12.98665 -12.90846 -12.19287 -12.10619 -11.95032 -11.70426 -10.98750 -10.54873 -9.82860 -9.47086 -9.33962 -6.77627 -0.03710 0.28796 1.37958 1.54652 1.72911 1.75148 1.83774 2.12598 2.25208 2.27195 2.61589 2.72585 3.24196 3.32297 3.65965 3.80791 3.93597 4.11874 4.20011 4.35284 4.69018 4.88142 5.11804 5.25448 5.41351 5.54884 5.58815 5.80022 6.00370 6.34089 6.59025 6.73363 6.78208 7.74546 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.014892 B = 0.010364 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.718237 B = 2701.083724 C = 4267.388483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.303 3.697 3 C -0.189 4.189 4 C 0.029 3.971 5 C -0.312 4.312 6 C 0.398 3.602 7 O -0.535 6.535 8 C -0.082 4.082 9 C -0.008 4.008 10 O -0.309 6.309 11 C 0.400 3.600 12 F -0.212 7.212 13 F -0.211 7.211 14 C 0.110 3.890 15 C -0.465 4.465 16 H 0.082 0.918 17 C 0.018 3.982 18 N -0.727 5.727 19 Si 1.110 2.890 20 H -0.259 1.259 21 H -0.256 1.256 22 H -0.270 1.270 23 H 0.117 0.883 24 H 0.131 0.869 25 H 0.139 0.861 26 H 0.216 0.784 27 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.196 2.378 -4.531 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.007 4.007 3 C -0.195 4.195 4 C 0.007 3.993 5 C -0.314 4.314 6 C 0.265 3.735 7 O -0.416 6.416 8 C -0.102 4.102 9 C -0.051 4.051 10 O -0.227 6.227 11 C 0.310 3.690 12 F -0.194 7.194 13 F -0.193 7.193 14 C 0.104 3.896 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.208 4.208 18 N -0.344 5.344 19 Si 0.926 3.074 20 H -0.183 1.183 21 H -0.180 1.180 22 H -0.195 1.195 23 H 0.135 0.865 24 H 0.147 0.853 25 H 0.157 0.843 26 H 0.232 0.768 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 8.451 3.514 -4.986 10.422 hybrid contribution 0.101 -1.723 1.174 2.088 sum 8.552 1.790 -3.812 9.533 Atomic orbital electron populations 1.81029 1.12825 1.12297 1.12735 1.25655 0.92600 0.91125 0.91294 1.16533 0.83339 1.09816 1.09797 1.20947 0.93845 0.92537 0.91953 1.19793 0.93050 1.07454 1.11130 1.24039 0.95666 0.77992 0.75778 1.90440 1.74424 1.37857 1.38833 1.21329 0.99748 0.94386 0.94767 1.18597 0.90560 0.95891 1.00035 1.86654 1.17240 1.55445 1.63363 1.24033 0.80099 0.83859 0.80970 1.93038 1.90408 1.94375 1.41542 1.93041 1.90109 1.45711 1.90443 1.18051 0.88896 0.92303 0.90337 1.21063 1.08697 0.98397 1.20781 0.89985 1.28432 0.90702 0.96370 1.05304 1.70328 1.20585 1.38708 1.04802 0.83058 0.77760 0.75798 0.70786 1.18261 1.17981 1.19514 0.86499 0.85251 0.84302 0.76776 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.32 18.54 19.00 0.35 -23.96 15 2 C 0.30 14.09 14.44 88.33 1.28 15.37 15 3 C -0.19 -8.48 5.93 -19.69 -0.12 -8.60 15 4 C 0.03 1.19 9.27 22.81 0.21 1.40 15 5 C -0.31 -11.79 5.87 -20.16 -0.12 -11.91 15 6 C 0.40 13.20 11.41 70.11 0.80 14.00 15 7 O -0.53 -21.23 17.09 -3.10 -0.05 -21.28 15 8 C -0.08 -3.04 7.93 22.61 0.18 -2.86 15 9 C -0.01 -0.31 5.53 23.01 0.13 -0.19 15 10 O -0.31 -11.43 7.33 -89.40 -0.66 -12.08 15 11 C 0.40 10.82 5.98 113.37 0.68 11.50 15 12 F -0.21 -6.18 15.57 44.97 0.70 -5.48 15 13 F -0.21 -5.86 15.57 44.97 0.70 -5.16 15 14 C 0.11 5.01 5.17 -19.77 -0.10 4.90 15 15 C -0.46 -21.21 8.19 23.32 0.19 -21.01 15 16 H 0.08 3.84 7.73 -2.91 -0.02 3.82 15 17 C 0.02 0.74 4.21 85.47 0.36 1.09 15 18 N -0.73 -31.43 11.91 21.94 0.26 -31.17 15 19 Si 1.11 35.61 30.01 68.60 2.06 37.67 15 20 H -0.26 -7.91 7.11 99.48 0.71 -7.21 15 21 H -0.26 -7.69 7.11 99.48 0.71 -6.98 15 22 H -0.27 -8.56 7.11 99.48 0.71 -7.85 15 23 H 0.12 4.76 7.59 -2.91 -0.02 4.73 15 24 H 0.13 3.09 8.06 -2.91 -0.02 3.07 15 25 H 0.14 4.44 5.01 -2.91 -0.01 4.42 15 26 H 0.22 3.61 8.14 -2.39 -0.02 3.59 15 27 H 0.29 13.29 7.27 -92.70 -0.67 12.61 15 Total: -1.00 -55.76 265.06 8.19 -47.56 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 1.34 Total: 10.21 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 3.48 Total: 3.69 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.61 Total: -55.13 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.71 Total: -33.37 kcal Atomic # 9 Polarization: -12.03 SS G_CDS: 1.40 Total: -10.63 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.06 Total: 37.67 kcal Total: -55.76 8.19 -47.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575639932.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.963 kcal (2) G-P(sol) polarization free energy of solvation -55.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds