Wall clock time and date at job start Mon Mar 30 2020 04:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39146 * 120.35430 * 88.01905 * 3 2 1 5 5 C 1.38641 * 120.19430 * 179.97438 * 4 3 2 6 6 O 1.35451 * 119.53731 * 180.02562 * 5 4 3 7 7 C 1.42901 * 116.99962 * 359.97438 * 6 5 4 8 8 F 1.39897 * 109.47109 * 299.99775 * 7 6 5 9 9 F 1.39899 * 109.47168 * 59.99955 * 7 6 5 10 10 C 1.40829 * 120.92772 * 0.02562 * 5 4 3 11 11 C 1.46995 * 119.64291 * 179.97438 * 10 5 4 12 12 O 1.21275 * 119.99468 * 0.02562 * 11 10 5 13 13 C 1.39005 * 120.71874 * 359.97438 * 10 5 4 14 14 C 1.40599 * 119.75459 * 0.25529 * 13 10 5 15 15 C 1.40702 * 120.44571 * 179.71778 * 14 13 10 16 16 H 1.08001 * 120.00075 * 204.70786 * 15 14 13 17 17 C 1.40204 * 119.99546 * 24.71393 * 15 14 13 18 18 N 1.30703 * 120.00279 * 17.50659 * 17 15 14 19 19 Si 1.86797 * 119.99860 * 197.50156 * 17 15 14 20 20 H 1.48497 * 109.46992 * 59.99913 * 19 17 15 21 21 H 1.48496 * 109.47161 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47181 * 300.00416 * 19 17 15 23 23 H 1.08003 * 119.90448 * 359.97438 * 4 3 2 24 24 H 1.09002 * 109.47192 * 180.02562 * 7 6 5 25 25 H 1.07996 * 120.00214 * 180.02562 * 11 10 5 26 26 H 1.07998 * 120.12073 * 179.97438 * 13 10 5 27 27 H 0.96999 * 120.00003 * 184.59833 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2712 -0.0406 -1.2000 5 6 4.6576 -0.0393 -1.1961 6 8 5.3287 -0.0791 -2.3721 7 6 4.5441 -0.1214 -3.5657 8 9 3.7383 -1.2649 -3.5538 9 9 3.7354 1.0183 -3.6328 10 6 5.3780 0.0029 0.0132 11 6 6.8477 0.0026 -0.0156 12 8 7.4332 -0.0334 -1.0770 13 6 4.7144 0.0448 1.2339 14 6 3.3088 0.0398 1.2645 15 6 2.6223 0.0759 2.4922 16 1 1.6188 -0.3173 2.5615 17 6 3.2409 0.6225 3.6254 18 7 4.2868 1.3947 3.4906 19 14 2.5703 0.2473 5.3280 20 1 2.6155 -1.2177 5.5660 21 1 3.3957 0.9410 6.3491 22 1 1.1660 0.7209 5.4223 23 1 2.7354 -0.0736 -2.1372 24 1 5.2035 -0.1510 -4.4331 25 1 7.4059 0.0344 0.9083 26 1 5.2765 0.0766 2.1555 27 1 4.7549 1.7187 4.2759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641028.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:14 Heat of formation + Delta-G solvation = -149.551613 kcal Electronic energy + Delta-G solvation = -19630.719887 eV Core-core repulsion = 15988.944363 eV Total energy + Delta-G solvation = -3641.775523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.16737 -48.16660 -40.82232 -39.09080 -38.47171 -36.96985 -35.48206 -32.35950 -31.45899 -27.96321 -26.34612 -25.97258 -23.27467 -22.21480 -20.41829 -19.52311 -18.71614 -18.65889 -18.14139 -17.64775 -16.61243 -16.42869 -15.76749 -15.57682 -15.31336 -14.97614 -14.62117 -14.58037 -14.54572 -14.52441 -14.21659 -13.99922 -13.94245 -13.55097 -13.14996 -12.98093 -12.86197 -12.52538 -12.14464 -12.06663 -11.73546 -11.11638 -10.46774 -9.73567 -9.33471 -8.90045 -6.50877 -0.31591 0.77650 1.28038 1.42973 1.52313 1.62539 1.89306 2.03213 2.16580 2.39772 2.58837 2.71822 3.35521 3.44955 3.58902 3.71385 3.86878 4.06277 4.51489 4.56690 4.86522 4.91154 5.07542 5.16000 5.37828 5.59459 5.82951 6.16353 6.28773 6.52969 6.60796 6.73290 6.81550 8.03237 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.021124 B = 0.007166 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.214044 B = 3906.518689 C = 4988.400926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.300 3.700 3 C -0.164 4.164 4 C -0.109 4.109 5 C 0.006 3.994 6 O -0.310 6.310 7 C 0.397 3.603 8 F -0.216 7.216 9 F -0.217 7.217 10 C -0.162 4.162 11 C 0.391 3.609 12 O -0.486 6.486 13 C -0.074 4.074 14 C 0.103 3.897 15 C -0.445 4.445 16 H 0.074 0.926 17 C 0.050 3.950 18 N -0.777 5.777 19 Si 0.978 3.022 20 H -0.254 1.254 21 H -0.253 1.253 22 H -0.273 1.273 23 H 0.119 0.881 24 H 0.227 0.773 25 H 0.145 0.855 26 H 0.156 0.844 27 H 0.309 0.691 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -1.584 -2.086 7.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.009 4.009 3 C -0.171 4.171 4 C -0.130 4.130 5 C -0.038 4.038 6 O -0.228 6.228 7 C 0.308 3.692 8 F -0.198 7.198 9 F -0.199 7.199 10 C -0.164 4.164 11 C 0.252 3.748 12 O -0.361 6.361 13 C -0.093 4.093 14 C 0.098 3.902 15 C -0.472 4.472 16 H 0.092 0.908 17 C -0.172 4.172 18 N -0.400 5.400 19 Si 0.798 3.202 20 H -0.178 1.178 21 H -0.176 1.176 22 H -0.198 1.198 23 H 0.137 0.863 24 H 0.243 0.757 25 H 0.161 0.839 26 H 0.174 0.826 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.867 -1.387 -2.567 6.552 hybrid contribution -0.795 -0.001 0.486 0.932 sum 5.071 -1.387 -2.080 5.654 Atomic orbital electron populations 1.81004 1.12921 1.15228 1.10237 1.25822 0.92812 0.91198 0.91038 1.16803 0.83267 1.22886 0.94112 1.20870 0.92471 1.02710 0.96993 1.18320 0.89462 1.11134 0.84868 1.86596 1.34685 1.89184 1.12346 1.24218 0.82126 0.70840 0.92065 1.93037 1.77087 1.52825 1.96893 1.93040 1.76957 1.53340 1.96606 1.20468 0.97049 1.07939 0.90974 1.24441 0.87669 0.68949 0.93786 1.90459 1.72468 1.36210 1.36979 1.21631 0.93137 0.98535 0.95976 1.18634 0.92321 0.89044 0.90233 1.19834 1.01828 1.31858 0.93633 0.90817 1.26678 0.94613 0.91120 1.04787 1.69625 1.15665 1.18686 1.36014 0.85266 0.79088 0.80346 0.75457 1.17834 1.17630 1.19835 0.86338 0.75717 0.83907 0.82632 0.87888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -25.08 18.54 19.00 0.35 -24.73 15 2 C 0.30 14.38 14.25 88.33 1.26 15.63 15 3 C -0.16 -7.61 5.93 -19.63 -0.12 -7.73 15 4 C -0.11 -4.71 7.91 22.58 0.18 -4.53 15 5 C 0.01 0.24 6.51 23.00 0.15 0.39 15 6 O -0.31 -11.43 8.37 -66.12 -0.55 -11.98 15 7 C 0.40 11.37 5.98 113.37 0.68 12.05 15 8 F -0.22 -6.90 15.54 44.97 0.70 -6.20 15 9 F -0.22 -7.06 15.54 44.97 0.70 -6.36 15 10 C -0.16 -6.30 5.86 -20.16 -0.12 -6.42 15 11 C 0.39 12.78 11.42 70.12 0.80 13.58 15 12 O -0.49 -18.33 15.87 18.35 0.29 -18.04 15 13 C -0.07 -2.99 8.40 23.03 0.19 -2.79 15 14 C 0.10 4.73 5.73 -19.92 -0.11 4.61 15 15 C -0.44 -20.38 8.55 23.35 0.20 -20.18 15 16 H 0.07 3.51 7.37 -2.91 -0.02 3.49 15 17 C 0.05 2.03 5.15 85.34 0.44 2.47 15 18 N -0.78 -30.97 10.95 21.87 0.24 -30.73 15 19 Si 0.98 31.53 29.60 68.60 2.03 33.56 15 20 H -0.25 -8.06 7.11 99.48 0.71 -7.35 15 21 H -0.25 -7.34 7.11 99.48 0.71 -6.64 15 22 H -0.27 -9.37 7.11 99.48 0.71 -8.67 15 23 H 0.12 4.93 4.99 -2.91 -0.01 4.92 15 24 H 0.23 3.66 8.14 -2.39 -0.02 3.64 15 25 H 0.14 3.32 8.06 -2.91 -0.02 3.30 15 26 H 0.16 5.87 6.17 -2.91 -0.02 5.86 15 27 H 0.31 10.68 8.30 -92.71 -0.77 9.91 15 Total: -1.00 -57.48 264.45 8.56 -48.92 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.25 Total: 8.46 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 3.55 Total: 7.10 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: 0.59 Total: -55.46 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.26 Total: -30.02 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 1.40 Total: -12.56 kcal Atomic # 14 Polarization: 31.53 SS G_CDS: 2.03 Total: 33.56 kcal Total: -57.48 8.56 -48.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641028.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.631 kcal (2) G-P(sol) polarization free energy of solvation -57.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds