Wall clock time and date at job start Mon Mar 30 2020 04:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39088 * 120.48296 * 87.56747 * 3 2 1 5 5 C 1.38756 * 120.94211 * 180.26554 * 4 3 2 6 6 O 1.35696 * 119.02678 * 179.72044 * 5 4 3 7 7 C 1.42897 * 117.00182 * 0.02562 * 6 5 4 8 8 F 1.39897 * 109.47290 * 299.99896 * 7 6 5 9 9 F 1.39904 * 109.47143 * 59.99465 * 7 6 5 10 10 C 1.38835 * 121.94619 * 359.74898 * 5 4 3 11 11 C 1.39247 * 120.86711 * 359.95263 * 10 5 4 12 12 C 1.46670 * 120.51662 * 180.02562 * 11 10 5 13 13 O 1.21336 * 119.99766 * 359.97438 * 12 11 10 14 14 C 1.46629 * 120.48618 * 267.28374 * 3 2 1 15 15 C 1.39990 * 120.88257 * 359.97438 * 14 3 2 16 16 H 1.08000 * 119.99565 * 47.26459 * 15 14 3 17 17 C 1.40588 * 120.00480 * 227.27376 * 15 14 3 18 18 N 1.30480 * 120.00126 * 200.39702 * 17 15 14 19 19 Si 1.86798 * 120.00021 * 20.11390 * 17 15 14 20 20 H 1.48507 * 109.47383 * 265.46115 * 19 17 15 21 21 H 1.48500 * 109.47378 * 25.45880 * 19 17 15 22 22 H 1.48501 * 109.47555 * 145.45968 * 19 17 15 23 23 H 1.07996 * 119.53097 * 359.97438 * 4 3 2 24 24 H 1.09001 * 109.47252 * 179.97438 * 7 6 5 25 25 H 1.08001 * 119.56166 * 179.97438 * 10 5 4 26 26 H 1.07990 * 120.00485 * 179.97438 * 12 11 10 27 27 H 0.96999 * 120.00069 * 179.72441 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2736 -0.0499 -1.1976 5 6 4.6611 -0.0553 -1.2084 6 8 5.3100 -0.1111 -2.3989 7 6 4.5021 -0.1607 -3.5765 8 9 3.6900 -1.2992 -3.5373 9 9 3.6988 0.9830 -3.6394 10 6 5.4051 -0.0058 -0.0373 11 6 4.7789 0.0527 1.2050 12 6 5.5724 0.1054 2.4373 13 8 6.7844 0.0976 2.3792 14 6 3.3119 0.0609 1.2622 15 6 2.6411 0.1193 2.4895 16 1 1.8253 -0.5589 2.6917 17 6 3.0292 1.0609 3.4586 18 7 2.7083 0.8790 4.7102 19 14 4.0110 2.5684 2.9557 20 1 5.4601 2.2983 3.1362 21 1 3.7399 2.8827 1.5299 22 1 3.6136 3.7227 3.8012 23 1 2.7339 -0.0903 -2.1321 24 1 5.1443 -0.2022 -4.4563 25 1 6.4838 -0.0124 -0.0907 26 1 5.0782 0.1510 3.3964 27 1 2.9795 1.5267 5.3795 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641117.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:04 Heat of formation + Delta-G solvation = -143.077941 kcal Electronic energy + Delta-G solvation = -19735.246966 eV Core-core repulsion = 16093.752163 eV Total energy + Delta-G solvation = -3641.494804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.18464 -48.17060 -40.80706 -39.66767 -38.30547 -36.89405 -35.71737 -32.35262 -32.21824 -28.14352 -26.40539 -25.95920 -23.75050 -22.23268 -20.30113 -19.86578 -18.82065 -18.72273 -18.16076 -17.74697 -17.09316 -16.15069 -15.81265 -15.57928 -15.55976 -15.37845 -15.13196 -14.95865 -14.69839 -14.54020 -14.40810 -14.14688 -14.07169 -13.76379 -13.27969 -13.16872 -12.87557 -12.39008 -12.28607 -12.02425 -11.94223 -11.35729 -10.56335 -9.96863 -9.29142 -9.17838 -6.81926 -0.39597 0.18783 1.16206 1.20775 1.34555 1.44227 1.78046 1.89786 1.93888 2.19295 2.38407 2.70319 3.08522 3.13293 3.57377 3.71750 3.85197 3.87595 4.12939 4.30109 4.50077 4.66651 4.92961 5.01225 5.15010 5.41744 5.50177 5.88081 6.06376 6.28245 6.35727 6.61556 6.68548 7.83720 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.020593 B = 0.008153 C = 0.006635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.387196 B = 3433.638404 C = 4218.865562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.300 3.700 3 C -0.134 4.134 4 C -0.055 4.055 5 C -0.025 4.025 6 O -0.325 6.325 7 C 0.401 3.599 8 F -0.215 7.215 9 F -0.215 7.215 10 C 0.006 3.994 11 C -0.284 4.284 12 C 0.392 3.608 13 O -0.517 6.517 14 C 0.144 3.856 15 C -0.446 4.446 16 H 0.085 0.915 17 C 0.071 3.929 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.244 1.244 21 H -0.245 1.245 22 H -0.250 1.250 23 H 0.138 0.862 24 H 0.237 0.763 25 H 0.141 0.859 26 H 0.099 0.901 27 H 0.310 0.690 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.255 1.207 -10.774 12.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.011 4.011 3 C -0.140 4.140 4 C -0.076 4.076 5 C -0.067 4.067 6 O -0.243 6.243 7 C 0.312 3.688 8 F -0.197 7.197 9 F -0.197 7.197 10 C -0.013 4.013 11 C -0.287 4.287 12 C 0.258 3.742 13 O -0.398 6.398 14 C 0.138 3.862 15 C -0.473 4.473 16 H 0.103 0.897 17 C -0.153 4.153 18 N -0.408 5.408 19 Si 0.728 3.272 20 H -0.168 1.168 21 H -0.168 1.168 22 H -0.174 1.174 23 H 0.155 0.845 24 H 0.252 0.748 25 H 0.159 0.841 26 H 0.115 0.885 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.197 1.243 -10.509 11.790 hybrid contribution -0.193 0.415 0.239 0.516 sum 5.004 1.658 -10.270 11.544 Atomic orbital electron populations 1.81061 1.12781 1.13372 1.09648 1.25521 0.92486 0.91631 0.91498 1.16861 0.83639 1.19773 0.93679 1.21361 0.92904 0.95838 0.97546 1.17841 0.89645 1.14143 0.85091 1.86471 1.35518 1.89927 1.12423 1.24288 0.81949 0.70796 0.91790 1.93058 1.76642 1.53145 1.96822 1.93060 1.77104 1.53012 1.96555 1.20482 1.00091 0.92165 0.88598 1.21301 0.92922 1.19897 0.94572 1.23607 0.88025 0.68994 0.93540 1.90408 1.17724 1.40633 1.91019 1.19562 0.89773 0.86211 0.90649 1.19376 1.15622 1.16075 0.96201 0.89749 1.26719 0.94106 1.01003 0.93477 1.69504 1.33435 1.35399 1.02428 0.86346 0.80078 0.78804 0.81967 1.16818 1.16828 1.17422 0.84482 0.74754 0.84096 0.88457 0.87801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.20 18.54 19.00 0.35 -21.84 15 2 C 0.30 13.06 14.62 88.33 1.29 14.35 15 3 C -0.13 -5.58 5.93 -19.64 -0.12 -5.70 15 4 C -0.06 -2.01 7.87 22.60 0.18 -1.83 15 5 C -0.02 -0.85 6.48 22.54 0.15 -0.71 15 6 O -0.32 -9.02 10.39 -90.16 -0.94 -9.96 15 7 C 0.40 8.17 5.98 113.37 0.68 8.85 15 8 F -0.21 -5.29 15.51 44.97 0.70 -4.59 15 9 F -0.22 -5.34 15.51 44.97 0.70 -4.64 15 10 C 0.01 0.22 9.47 22.66 0.21 0.44 15 11 C -0.28 -11.70 4.88 -18.59 -0.09 -11.79 15 12 C 0.39 16.33 7.54 70.02 0.53 16.86 15 13 O -0.52 -22.66 17.16 -3.20 -0.05 -22.72 15 14 C 0.14 6.29 4.82 -18.42 -0.09 6.20 15 15 C -0.45 -20.88 8.41 23.27 0.20 -20.69 15 16 H 0.08 4.33 8.05 -2.91 -0.02 4.31 15 17 C 0.07 3.13 3.89 85.47 0.33 3.46 15 18 N -0.79 -35.39 13.91 21.94 0.31 -35.08 15 19 Si 0.91 35.19 24.47 68.60 1.68 36.87 15 20 H -0.24 -9.27 5.86 99.48 0.58 -8.69 15 21 H -0.25 -9.85 7.11 99.48 0.71 -9.14 15 22 H -0.25 -8.95 7.11 99.48 0.71 -8.24 15 23 H 0.14 4.58 4.88 -2.91 -0.01 4.57 15 24 H 0.24 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.14 4.86 7.62 -2.91 -0.02 4.84 15 26 H 0.10 4.08 5.27 -2.92 -0.02 4.07 15 27 H 0.31 12.33 8.29 -92.71 -0.77 11.56 15 Total: -1.00 -54.68 257.72 7.14 -47.53 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: 1.13 Total: 4.98 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 3.27 Total: 9.45 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.66 Total: -56.92 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -0.99 Total: -32.67 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 1.40 Total: -9.23 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.68 Total: 36.87 kcal Total: -54.68 7.14 -47.53 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641117.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.543 kcal (2) G-P(sol) polarization free energy of solvation -54.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds