Wall clock time and date at job start Mon Mar 30 2020 04:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39976 * 119.56991 * 325.90561 * 3 2 1 5 5 C 1.36168 * 121.30341 * 179.97438 * 4 3 2 6 6 C 1.40929 * 120.34729 * 359.75198 * 5 4 3 7 7 C 1.40416 * 120.44028 * 180.28777 * 6 5 4 8 8 H 1.08000 * 120.00513 * 147.50375 * 7 6 5 9 9 C 1.40539 * 119.99906 * 327.50004 * 7 6 5 10 10 N 1.30485 * 119.99800 * 350.21705 * 9 7 6 11 11 Si 1.86799 * 120.00163 * 170.21123 * 9 7 6 12 12 H 1.48495 * 109.46771 * 60.00298 * 11 9 7 13 13 H 1.48498 * 109.47061 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47141 * 300.00115 * 11 9 7 15 15 C 1.46792 * 119.12866 * 0.54377 * 6 5 4 16 16 C 1.46219 * 120.61159 * 179.71663 * 15 6 5 17 17 O 1.21380 * 119.99666 * 354.41379 * 16 15 6 18 18 C 1.40049 * 118.77569 * 359.44417 * 15 6 5 19 19 O 1.35367 * 120.21103 * 180.29268 * 18 15 6 20 20 C 1.42904 * 116.99481 * 90.00045 * 19 18 15 21 21 F 1.39897 * 109.47399 * 300.00025 * 20 19 18 22 22 F 1.39898 * 109.46968 * 60.00182 * 20 19 18 23 23 H 1.07994 * 119.34621 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.82575 * 180.02562 * 5 4 3 25 25 H 0.97001 * 119.99904 * 180.02562 * 10 9 7 26 26 H 1.07995 * 119.99910 * 174.68707 * 16 15 6 27 27 H 1.09002 * 109.47008 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2592 -1.0072 0.6825 5 6 4.6203 -1.0410 0.7051 6 6 5.3683 -0.0551 0.0309 7 6 6.7719 -0.0915 0.0480 8 1 7.3318 0.2641 -0.8043 9 6 7.4482 -0.5907 1.1743 10 7 6.7899 -0.8411 2.2727 11 14 9.2896 -0.8958 1.0988 12 1 9.9902 0.3777 0.7949 13 1 9.7588 -1.4183 2.4073 14 1 9.5836 -1.8888 0.0346 15 6 4.6609 1.0137 -0.6847 16 6 5.4048 2.0565 -1.3898 17 8 6.6146 2.1028 -1.3034 18 6 3.2604 1.0128 -0.6844 19 8 2.5786 1.9812 -1.3400 20 6 2.2521 1.7315 -2.7087 21 9 3.4283 1.5384 -3.4410 22 9 1.4548 0.5853 -2.7962 23 1 2.7020 -1.7736 1.2005 24 1 5.1292 -1.8301 1.2389 25 1 7.2567 -1.1853 3.0502 26 1 4.8774 2.7881 -1.9838 27 1 1.7082 2.5847 -3.1139 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641124.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:23 Heat of formation + Delta-G solvation = -152.170817 kcal Electronic energy + Delta-G solvation = -19933.632335 eV Core-core repulsion = 16291.743234 eV Total energy + Delta-G solvation = -3641.889101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.05511 -48.19225 -40.82360 -39.20736 -38.12300 -37.17137 -35.57990 -32.15326 -31.28709 -28.35607 -26.94817 -24.97729 -23.57128 -21.98389 -20.32280 -19.27544 -19.15874 -18.77832 -18.41093 -17.50313 -17.02306 -16.36543 -15.63205 -15.36092 -15.14650 -15.02685 -14.98101 -14.58020 -14.44489 -14.30546 -14.20020 -13.69845 -13.64932 -13.60793 -13.26162 -12.94752 -12.64105 -12.31042 -12.23221 -12.18188 -11.77896 -11.24686 -10.15039 -9.62932 -9.42291 -8.97557 -6.69066 -0.02890 0.21051 1.39051 1.42947 1.51068 1.81559 1.87622 2.07181 2.14396 2.27854 2.68623 2.75647 3.29728 3.41600 3.73197 3.74688 3.77669 4.26569 4.66398 4.71895 4.83088 4.97405 5.01679 5.28549 5.59385 5.74871 5.81079 6.08420 6.39029 6.51979 6.60777 6.77892 7.01132 7.95370 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.024607 B = 0.007315 C = 0.005974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.633107 B = 3826.937540 C = 4685.621898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.296 3.704 3 C -0.197 4.197 4 C -0.033 4.033 5 C -0.162 4.162 6 C 0.125 3.875 7 C -0.394 4.394 8 H 0.100 0.900 9 C 0.034 3.966 10 N -0.770 5.770 11 Si 0.989 3.011 12 H -0.266 1.266 13 H -0.255 1.255 14 H -0.252 1.252 15 C -0.336 4.336 16 C 0.384 3.616 17 O -0.512 6.512 18 C 0.209 3.791 19 O -0.346 6.346 20 C 0.402 3.598 21 F -0.209 7.209 22 F -0.216 7.216 23 H 0.130 0.870 24 H 0.127 0.873 25 H 0.307 0.693 26 H 0.107 0.893 27 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.730 1.661 -4.540 4.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.014 4.014 3 C -0.203 4.203 4 C -0.054 4.054 5 C -0.181 4.181 6 C 0.120 3.880 7 C -0.419 4.419 8 H 0.118 0.882 9 C -0.189 4.189 10 N -0.392 5.392 11 Si 0.808 3.192 12 H -0.191 1.191 13 H -0.179 1.179 14 H -0.175 1.175 15 C -0.340 4.340 16 C 0.251 3.749 17 O -0.392 6.392 18 C 0.163 3.837 19 O -0.265 6.265 20 C 0.314 3.686 21 F -0.191 7.191 22 F -0.198 7.198 23 H 0.148 0.852 24 H 0.144 0.856 25 H 0.119 0.881 26 H 0.123 0.877 27 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.919 1.736 -4.188 4.923 hybrid contribution 0.896 -0.403 0.100 0.988 sum -1.022 1.332 -4.089 4.420 Atomic orbital electron populations 1.81051 1.12561 1.10847 1.12957 1.25665 0.92478 0.91818 0.91481 1.15709 0.83626 1.03667 1.17305 1.20430 0.94146 0.95401 0.95409 1.21033 0.92559 1.00324 1.04221 1.18945 0.93563 0.88003 0.87466 1.20532 0.92324 1.27771 1.01261 0.88215 1.27122 1.06801 0.91234 0.93730 1.69603 1.41639 1.25476 1.02439 0.85109 0.74440 0.79895 0.79744 1.19083 1.17872 1.17544 1.21691 0.91497 1.03083 1.17697 1.23387 0.88476 0.84517 0.78530 1.90422 1.18490 1.72926 1.57358 1.18475 0.88615 0.85804 0.90792 1.86379 1.73710 1.41885 1.24573 1.24446 0.78003 0.88105 0.78076 1.93074 1.52046 1.96339 1.77628 1.93071 1.74260 1.56982 1.95507 0.85236 0.85557 0.88082 0.87719 0.75064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -20.48 18.54 19.00 0.35 -20.13 15 2 C 0.30 11.96 13.46 88.33 1.19 13.15 15 3 C -0.20 -8.07 5.64 -21.07 -0.12 -8.18 15 4 C -0.03 -1.33 9.59 22.21 0.21 -1.12 15 5 C -0.16 -7.16 8.56 22.45 0.19 -6.97 15 6 C 0.13 5.96 5.67 -19.85 -0.11 5.85 15 7 C -0.39 -18.89 7.83 23.36 0.18 -18.71 15 8 H 0.10 4.96 5.98 -2.91 -0.02 4.95 15 9 C 0.03 1.47 5.25 85.45 0.45 1.92 15 10 N -0.77 -33.39 11.04 21.93 0.24 -33.15 15 11 Si 0.99 33.36 29.58 68.60 2.03 35.39 15 12 H -0.27 -9.39 7.11 99.48 0.71 -8.69 15 13 H -0.26 -7.79 7.11 99.48 0.71 -7.09 15 14 H -0.25 -8.23 7.11 99.48 0.71 -7.52 15 15 C -0.34 -14.90 5.92 -18.53 -0.11 -15.01 15 16 C 0.38 16.07 10.21 69.89 0.71 16.79 15 17 O -0.51 -24.40 14.58 -3.34 -0.05 -24.45 15 18 C 0.21 8.48 5.35 23.25 0.12 8.60 15 19 O -0.35 -11.70 8.99 -86.58 -0.78 -12.48 15 20 C 0.40 10.65 6.35 113.37 0.72 11.37 15 21 F -0.21 -6.16 15.30 44.97 0.69 -5.47 15 22 F -0.22 -6.94 15.75 44.97 0.71 -6.24 15 23 H 0.13 4.51 8.06 -2.91 -0.02 4.49 15 24 H 0.13 5.56 6.47 -2.91 -0.02 5.54 15 25 H 0.31 11.71 8.29 -92.71 -0.77 10.94 15 26 H 0.11 3.59 6.88 -2.91 -0.02 3.57 15 27 H 0.23 3.13 8.14 -2.39 -0.02 3.11 15 Total: -1.00 -57.44 262.75 7.89 -49.55 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 1.25 Total: 9.29 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 3.44 Total: 7.69 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.59 Total: -53.27 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.83 Total: -36.93 kcal Atomic # 9 Polarization: -13.11 SS G_CDS: 1.40 Total: -11.71 kcal Atomic # 14 Polarization: 33.36 SS G_CDS: 2.03 Total: 35.39 kcal Total: -57.44 7.89 -49.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641124.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.622 kcal (2) G-P(sol) polarization free energy of solvation -57.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds