Wall clock time and date at job start Mon Mar 30 2020 04:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38488 * 120.02479 * 99.14892 * 3 2 1 5 5 C 1.40737 * 119.84275 * 179.74992 * 4 3 2 6 6 C 1.40742 * 120.05540 * 180.27309 * 5 4 3 7 7 H 1.08005 * 119.99353 * 205.17404 * 6 5 4 8 8 C 1.40360 * 120.00403 * 25.16889 * 6 5 4 9 9 N 1.30594 * 120.00023 * 17.62022 * 8 6 5 10 10 Si 1.86804 * 120.00291 * 197.62133 * 8 6 5 11 11 H 1.48503 * 109.46500 * 359.97438 * 10 8 6 12 12 H 1.48491 * 109.47130 * 119.99593 * 10 8 6 13 13 H 1.48497 * 109.47054 * 240.00049 * 10 8 6 14 14 C 1.41606 * 119.88440 * 0.51578 * 5 4 3 15 15 O 1.35554 * 119.97515 * 179.75169 * 14 5 4 16 16 C 1.42902 * 116.99895 * 179.72982 * 15 14 5 17 17 F 1.39908 * 109.46992 * 60.00078 * 16 15 14 18 18 F 1.39904 * 109.47046 * 300.00222 * 16 15 14 19 19 C 1.38146 * 120.04411 * 359.48421 * 14 5 4 20 20 C 1.39731 * 120.15927 * 0.26580 * 19 14 5 21 21 C 1.46783 * 119.94428 * 180.02562 * 20 19 14 22 22 O 1.21320 * 120.00297 * 180.02562 * 21 20 19 23 23 H 1.08005 * 120.07529 * 0.03405 * 4 3 2 24 24 H 0.96998 * 120.00322 * 180.02562 * 9 8 6 25 25 H 1.08999 * 109.47344 * 180.02562 * 16 15 14 26 26 H 1.08000 * 119.92236 * 180.29314 * 19 14 5 27 27 H 1.08001 * 119.99980 * 0.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2609 0.1916 -1.1838 5 6 4.6682 0.1968 -1.1785 6 6 5.3769 0.3962 -2.3781 7 1 6.3818 0.0142 -2.4814 8 6 4.7776 1.0913 -3.4401 9 7 3.7309 1.8410 -3.2217 10 14 5.4773 0.9440 -5.1658 11 1 6.6561 0.0411 -5.1465 12 1 4.4422 0.3881 -6.0738 13 1 5.8903 2.2862 -5.6487 14 6 5.3700 -0.0041 0.0349 15 8 6.7255 -0.0045 0.0412 16 6 7.3683 -0.2071 1.3013 17 9 6.9896 -1.4485 1.8238 18 9 6.9885 0.8071 2.1870 19 6 4.6741 -0.1942 1.2130 20 6 3.2768 -0.1945 1.2108 21 6 2.5422 -0.3963 2.4654 22 8 1.3290 -0.3972 2.4647 23 1 2.7224 0.3408 -2.1081 24 1 3.3165 2.3211 -3.9556 25 1 8.4496 -0.1842 1.1655 26 1 5.2113 -0.3425 2.1381 27 1 3.0816 -0.5440 3.3893 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641519.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:58 Heat of formation + Delta-G solvation = -152.270421 kcal Electronic energy + Delta-G solvation = -19645.875287 eV Core-core repulsion = 16003.981867 eV Total energy + Delta-G solvation = -3641.893420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.02812 -48.02538 -40.79688 -39.60007 -38.06543 -37.05515 -35.73985 -32.29199 -31.40995 -28.21661 -26.86176 -25.03041 -23.63187 -22.19991 -20.33931 -19.44603 -18.83265 -18.58602 -18.34040 -17.30914 -16.89423 -16.24700 -15.54454 -15.50398 -15.25972 -15.01555 -14.88117 -14.55698 -14.49207 -14.39262 -14.31035 -13.92175 -13.85277 -13.53528 -13.24780 -12.97312 -12.85753 -12.45025 -12.14158 -11.99056 -11.77267 -11.21886 -10.46800 -9.72957 -9.30715 -8.89705 -6.50956 -0.21933 0.53655 1.33193 1.44666 1.61144 1.80824 1.86795 2.10565 2.13815 2.16343 2.73015 2.82505 3.19266 3.43859 3.64857 3.82347 4.00478 4.10580 4.39293 4.78887 4.87282 5.01129 5.09087 5.28001 5.31337 5.65427 5.87684 6.04219 6.35741 6.52538 6.66192 6.72350 6.78185 8.01732 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.013401 B = 0.009477 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.834514 B = 2953.822677 C = 4798.017703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C 0.287 3.713 3 C 0.012 3.988 4 C -0.124 4.124 5 C 0.098 3.902 6 C -0.419 4.419 7 H 0.106 0.894 8 C 0.033 3.967 9 N -0.787 5.787 10 Si 0.991 3.009 11 H -0.246 1.246 12 H -0.267 1.267 13 H -0.264 1.264 14 C -0.015 4.015 15 O -0.320 6.320 16 C 0.400 3.600 17 F -0.213 7.213 18 F -0.214 7.214 19 C -0.088 4.088 20 C -0.282 4.282 21 C 0.384 3.616 22 O -0.535 6.535 23 H 0.124 0.876 24 H 0.302 0.698 25 H 0.228 0.772 26 H 0.145 0.855 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.829 -2.003 2.031 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.026 4.026 3 C 0.008 3.992 4 C -0.147 4.147 5 C 0.094 3.906 6 C -0.445 4.445 7 H 0.124 0.876 8 C -0.188 4.188 9 N -0.409 5.409 10 Si 0.810 3.190 11 H -0.169 1.169 12 H -0.191 1.191 13 H -0.188 1.188 14 C -0.059 4.059 15 O -0.238 6.238 16 C 0.311 3.689 17 F -0.195 7.195 18 F -0.196 7.196 19 C -0.107 4.107 20 C -0.287 4.287 21 C 0.251 3.749 22 O -0.416 6.416 23 H 0.141 0.859 24 H 0.114 0.886 25 H 0.244 0.756 26 H 0.163 0.837 27 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.398 -1.808 1.834 10.712 hybrid contribution 0.193 0.157 -0.343 0.424 sum 10.591 -1.651 1.491 10.822 Atomic orbital electron populations 1.80923 1.13221 1.10370 1.10958 1.26044 0.93260 0.92488 0.90841 1.16121 0.82946 1.04538 0.95564 1.21059 0.93500 1.04520 0.95609 1.17244 0.90865 0.91129 0.91370 1.20167 1.02117 1.26303 0.95889 0.87559 1.27099 0.94096 0.91741 1.05838 1.69707 1.17248 1.16950 1.37035 0.84984 0.79728 0.79766 0.74514 1.16858 1.19128 1.18814 1.18896 0.81173 1.11729 0.94086 1.86444 1.18257 1.87803 1.31260 1.24207 0.99161 0.71000 0.74564 1.93046 1.93749 1.45246 1.87447 1.93045 1.93733 1.61861 1.71000 1.21171 0.93037 0.99666 0.96804 1.19896 0.93687 1.21086 0.94027 1.24184 0.88331 0.69536 0.92807 1.90496 1.19269 1.42236 1.89567 0.85853 0.88596 0.75604 0.83718 0.84612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -24.11 18.40 19.00 0.35 -23.76 15 2 C 0.29 14.04 12.71 88.33 1.12 15.16 15 3 C 0.01 0.57 5.76 -21.13 -0.12 0.45 15 4 C -0.12 -5.86 8.35 22.94 0.19 -5.67 15 5 C 0.10 4.46 5.58 -21.23 -0.12 4.34 15 6 C -0.42 -18.28 8.70 23.40 0.20 -18.08 15 7 H 0.11 4.36 7.63 -2.91 -0.02 4.33 15 8 C 0.03 1.38 5.13 85.39 0.44 1.82 15 9 N -0.79 -34.92 10.96 21.90 0.24 -34.68 15 10 Si 0.99 31.01 29.60 68.60 2.03 33.04 15 11 H -0.25 -7.33 7.11 99.48 0.71 -6.62 15 12 H -0.27 -8.31 7.11 99.48 0.71 -7.61 15 13 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 14 C -0.02 -0.61 6.51 23.08 0.15 -0.46 15 15 O -0.32 -10.87 9.67 -88.60 -0.86 -11.73 15 16 C 0.40 9.38 5.98 113.37 0.68 10.06 15 17 F -0.21 -5.46 15.57 44.97 0.70 -4.76 15 18 F -0.21 -5.68 15.57 44.97 0.70 -4.98 15 19 C -0.09 -3.29 7.96 22.61 0.18 -3.11 15 20 C -0.28 -11.63 5.91 -19.84 -0.12 -11.75 15 21 C 0.38 14.36 11.40 70.06 0.80 15.16 15 22 O -0.54 -24.47 15.09 -3.15 -0.05 -24.52 15 23 H 0.12 6.06 6.17 -2.91 -0.02 6.04 15 24 H 0.30 12.03 8.29 -92.71 -0.77 11.26 15 25 H 0.23 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.15 4.59 5.05 -2.91 -0.01 4.58 15 27 H 0.14 3.63 8.06 -2.91 -0.02 3.61 15 Total: -1.00 -60.44 263.50 7.78 -52.66 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.25 Total: 10.80 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 3.41 Total: 7.91 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.59 Total: -58.44 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.90 Total: -36.24 kcal Atomic # 9 Polarization: -11.14 SS G_CDS: 1.40 Total: -9.74 kcal Atomic # 14 Polarization: 31.01 SS G_CDS: 2.03 Total: 33.04 kcal Total: -60.44 7.78 -52.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641519.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.607 kcal (2) G-P(sol) polarization free energy of solvation -60.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds