Wall clock time and date at job start Mon Mar 30 2020 04:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.38742 * 119.58060 * 152.73264 * 3 2 1 5 5 C 1.40673 * 119.80629 * 180.24804 * 4 3 2 6 6 C 1.40535 * 120.47300 * 179.74833 * 5 4 3 7 7 H 1.08001 * 119.99992 * 205.37671 * 6 5 4 8 8 C 1.40385 * 119.99934 * 25.37555 * 6 5 4 9 9 N 1.30587 * 119.99612 * 15.16683 * 8 6 5 10 10 Si 1.86792 * 119.99956 * 195.16496 * 8 6 5 11 11 H 1.48511 * 109.47131 * 90.00218 * 10 8 6 12 12 H 1.48499 * 109.47526 * 210.00098 * 10 8 6 13 13 H 1.48499 * 109.47628 * 330.00366 * 10 8 6 14 14 C 1.46758 * 119.05864 * 359.76987 * 5 4 3 15 15 C 1.46653 * 120.40632 * 179.97438 * 14 5 4 16 16 O 1.21337 * 119.99878 * 180.02562 * 15 14 5 17 17 C 1.39423 * 119.18923 * 359.97438 * 14 5 4 18 18 C 1.38670 * 120.12758 * 359.97438 * 17 14 5 19 19 O 1.35534 * 119.50755 * 180.02562 * 18 17 14 20 20 C 1.42905 * 117.00000 * 359.97438 * 19 18 17 21 21 F 1.39902 * 109.46703 * 60.00156 * 20 19 18 22 22 F 1.39900 * 109.47189 * 300.00676 * 20 19 18 23 23 H 1.08001 * 120.10025 * 0.04665 * 4 3 2 24 24 H 0.97000 * 119.99704 * 179.97438 * 9 8 6 25 25 H 1.07998 * 120.00122 * 0.02562 * 15 14 5 26 26 H 1.07999 * 119.93684 * 180.02562 * 17 14 5 27 27 H 1.08995 * 109.47145 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2524 1.0735 -0.5528 5 6 4.6591 1.0766 -0.5600 6 6 5.3666 2.1536 -1.1210 7 1 6.3672 2.0041 -1.4990 8 6 4.7726 3.4237 -1.1901 9 7 3.7058 3.6848 -0.4837 10 14 5.5083 4.7401 -2.2923 11 1 4.8961 4.6540 -3.6427 12 1 5.2388 6.0798 -1.7112 13 1 6.9748 4.5331 -2.3997 14 6 5.3775 -0.0610 0.0262 15 6 6.8438 -0.0886 0.0340 16 8 7.4302 -1.0331 0.5201 17 6 4.6490 -1.1152 0.5755 18 6 3.2627 -1.0829 0.5655 19 8 2.5670 -2.1142 1.1035 20 6 3.3268 -3.1905 1.6571 21 9 4.1386 -2.7061 2.6884 22 9 4.1280 -3.7570 0.6599 23 1 2.7069 1.9023 -0.9792 24 1 3.2955 4.5625 -0.5311 25 1 7.4016 0.7317 -0.3930 26 1 5.1653 -1.9582 1.0104 27 1 2.6496 -3.9476 2.0524 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575641718.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:02 Heat of formation + Delta-G solvation = -151.839003 kcal Electronic energy + Delta-G solvation = -19588.637075 eV Core-core repulsion = 15946.762362 eV Total energy + Delta-G solvation = -3641.874712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.049 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.18132 -48.18451 -40.72584 -39.43236 -38.18772 -37.32757 -35.48208 -32.38204 -31.44439 -27.97538 -26.71084 -25.89007 -23.08691 -22.07979 -20.64196 -19.82925 -18.74638 -18.63921 -18.13270 -17.27325 -16.95600 -16.47429 -15.63199 -15.56005 -15.29627 -14.96467 -14.89583 -14.73636 -14.57195 -14.56269 -14.21981 -14.08211 -13.68968 -13.64389 -13.27601 -13.12064 -12.85881 -12.56382 -12.11100 -12.02240 -11.70984 -11.15619 -10.35847 -9.77245 -9.33940 -8.90783 -6.52708 -0.36371 0.75707 1.31812 1.49031 1.63308 1.65370 1.66406 1.90554 2.17842 2.29119 2.62147 2.69433 3.00677 3.42956 3.62594 3.82716 3.85772 4.11207 4.49239 4.65302 4.82295 4.93422 5.06697 5.14523 5.52666 5.61108 5.76280 6.09651 6.24329 6.49913 6.52112 6.60455 6.93706 8.01594 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.019940 B = 0.007317 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.873640 B = 3825.823691 C = 4989.307796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.289 3.711 3 C -0.003 4.003 4 C -0.095 4.095 5 C 0.110 3.890 6 C -0.423 4.423 7 H 0.116 0.884 8 C 0.039 3.961 9 N -0.785 5.785 10 Si 0.991 3.009 11 H -0.261 1.261 12 H -0.271 1.271 13 H -0.246 1.246 14 C -0.301 4.301 15 C 0.394 3.606 16 O -0.543 6.543 17 C -0.085 4.085 18 C -0.021 4.021 19 O -0.337 6.337 20 C 0.404 3.596 21 F -0.215 7.215 22 F -0.214 7.214 23 H 0.139 0.861 24 H 0.305 0.695 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 -2.047 -0.658 2.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.024 4.024 3 C -0.007 4.007 4 C -0.117 4.117 5 C 0.106 3.894 6 C -0.448 4.448 7 H 0.134 0.866 8 C -0.183 4.183 9 N -0.407 5.407 10 Si 0.810 3.190 11 H -0.185 1.185 12 H -0.196 1.196 13 H -0.168 1.168 14 C -0.305 4.305 15 C 0.262 3.738 16 O -0.426 6.426 17 C -0.104 4.104 18 C -0.065 4.065 19 O -0.256 6.256 20 C 0.315 3.685 21 F -0.197 7.197 22 F -0.196 7.196 23 H 0.157 0.843 24 H 0.117 0.883 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.379 -2.363 -0.315 2.413 hybrid contribution 0.646 0.483 -0.140 0.819 sum 0.268 -1.880 -0.455 1.952 Atomic orbital electron populations 1.81042 1.12446 1.09949 1.10716 1.25825 0.92770 0.91721 0.92114 1.15337 0.83299 0.96008 1.06097 1.21479 0.94635 0.95275 1.00286 1.18729 0.90922 0.91414 0.88319 1.20244 1.02916 0.92181 1.29483 0.86619 1.27073 0.94210 1.02194 0.94853 1.69650 1.16821 1.25248 1.28993 0.85008 0.80469 0.75550 0.77952 1.18505 1.19573 1.16845 1.21464 0.95785 0.99944 1.13292 1.23821 0.88677 0.87529 0.73725 1.90400 1.73159 1.38126 1.40882 1.21225 0.91258 0.99132 0.98738 1.17906 0.89769 0.90200 1.08664 1.86353 1.36207 1.29243 1.73759 1.24163 0.82722 0.86485 0.75171 1.93053 1.76817 1.89644 1.60207 1.93050 1.77336 1.85044 1.64178 0.84344 0.88333 0.86151 0.86056 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -19.80 18.54 19.00 0.35 -19.44 15 2 C 0.29 12.22 14.76 88.33 1.30 13.53 15 3 C 0.00 -0.12 5.73 -21.34 -0.12 -0.25 15 4 C -0.09 -4.15 8.36 22.99 0.19 -3.96 15 5 C 0.11 4.81 5.73 -19.90 -0.11 4.70 15 6 C -0.42 -16.91 8.51 23.35 0.20 -16.71 15 7 H 0.12 4.10 6.64 -2.91 -0.02 4.09 15 8 C 0.04 1.47 5.20 85.40 0.44 1.91 15 9 N -0.78 -31.99 10.86 21.90 0.24 -31.75 15 10 Si 0.99 28.54 29.59 68.60 2.03 30.57 15 11 H -0.26 -7.48 7.11 99.48 0.71 -6.78 15 12 H -0.27 -7.74 7.11 99.48 0.71 -7.03 15 13 H -0.25 -6.72 7.11 99.48 0.71 -6.01 15 14 C -0.30 -13.18 6.06 -18.57 -0.11 -13.30 15 15 C 0.39 15.98 11.03 70.02 0.77 16.76 15 16 O -0.54 -24.81 17.17 -3.21 -0.06 -24.86 15 17 C -0.08 -3.70 7.76 22.66 0.18 -3.53 15 18 C -0.02 -0.88 6.49 22.95 0.15 -0.73 15 19 O -0.34 -12.43 9.78 -88.38 -0.86 -13.30 15 20 C 0.40 11.63 5.98 113.37 0.68 12.31 15 21 F -0.22 -7.17 15.54 44.97 0.70 -6.47 15 22 F -0.21 -7.01 15.54 44.97 0.70 -6.31 15 23 H 0.14 6.12 6.13 -2.91 -0.02 6.11 15 24 H 0.30 11.13 8.29 -92.71 -0.77 10.36 15 25 H 0.12 4.06 6.65 -2.91 -0.02 4.04 15 26 H 0.12 5.35 4.57 -2.91 -0.01 5.34 15 27 H 0.23 3.56 8.14 -2.39 -0.02 3.54 15 Total: -1.00 -55.13 264.36 7.93 -47.20 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.26 Total: 13.65 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 3.56 Total: 10.72 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.59 Total: -51.20 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.92 Total: -38.16 kcal Atomic # 9 Polarization: -14.17 SS G_CDS: 1.40 Total: -12.78 kcal Atomic # 14 Polarization: 28.54 SS G_CDS: 2.03 Total: 30.57 kcal Total: -55.13 7.93 -47.20 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575641718.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.634 kcal (2) G-P(sol) polarization free energy of solvation -55.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds