Wall clock time and date at job start Mon Mar 30 2020 05:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99703 * 2 1 4 4 H 1.48498 * 109.47145 * 274.98343 * 3 2 1 5 5 H 1.48498 * 109.47393 * 34.98567 * 3 2 1 6 6 H 1.48495 * 109.47076 * 154.98714 * 3 2 1 7 7 C 1.40043 * 120.00099 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00226 * 186.14506 * 7 2 1 9 9 C 1.46376 * 119.99846 * 6.14928 * 7 2 1 10 10 O 1.21684 * 120.00247 * 353.93379 * 9 7 2 11 11 N 1.34781 * 119.99804 * 173.94158 * 9 7 2 12 12 C 1.46497 * 119.99910 * 179.97438 * 11 9 7 13 13 H 1.08999 * 110.36822 * 32.81982 * 12 11 9 14 14 C 1.54264 * 110.32333 * 154.99681 * 12 11 9 15 15 C 1.54384 * 105.14813 * 118.84545 * 14 12 11 16 16 N 1.48717 * 104.51691 * 336.26801 * 15 14 12 17 17 C 1.38607 * 111.01343 * 158.96699 * 16 15 14 18 18 N 1.29694 * 124.94688 * 244.19023 * 17 16 15 19 19 C 1.32123 * 116.86188 * 179.81530 * 18 17 16 20 20 C 1.33321 * 114.57924 * 0.47054 * 19 18 17 21 21 S 1.70961 * 124.95173 * 64.49255 * 17 16 15 22 22 C 1.48565 * 104.28612 * 39.36547 * 16 15 14 23 23 H 0.97003 * 120.00271 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00204 * 359.97438 * 11 9 7 25 25 H 1.08999 * 110.32483 * 237.79212 * 14 12 11 26 26 H 1.09001 * 110.32445 * 359.89813 * 14 12 11 27 27 H 1.09000 * 110.40458 * 94.97954 * 15 14 12 28 28 H 1.08997 * 110.40867 * 217.41765 * 15 14 12 29 29 H 1.07997 * 122.70610 * 180.22370 * 19 18 17 30 30 H 1.08007 * 125.95100 * 179.75502 * 20 19 18 31 31 H 1.09001 * 110.40560 * 201.79507 * 22 16 15 32 32 H 1.08998 * 110.41365 * 79.35078 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4948 2.6200 0.8027 6 1 3.5869 1.4121 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4767 -0.1369 10 8 0.0646 -2.4827 -0.1388 11 7 1.9611 -3.6340 -0.2603 12 6 1.2350 -4.8991 -0.3962 13 1 0.3015 -4.7445 -0.9373 14 6 2.1085 -5.9430 -1.1222 15 6 2.2844 -7.0956 -0.1103 16 7 2.0716 -6.4615 1.2179 17 6 1.7334 -7.4081 2.1722 18 7 0.5982 -7.4603 2.7972 19 6 0.4445 -8.4355 3.6752 20 6 1.5016 -9.2376 3.8041 21 16 2.7546 -8.6727 2.7021 22 6 0.9542 -5.5083 0.9942 23 1 -0.4851 0.8400 0.0004 24 1 2.9312 -3.6293 -0.2590 25 1 1.6037 -6.3007 -2.0196 26 1 3.0769 -5.5135 -1.3790 27 1 1.5389 -7.8715 -0.2847 28 1 3.2898 -7.5111 -0.1785 29 1 -0.4628 -8.5696 4.2455 30 1 1.5768 -10.0859 4.4683 31 1 0.9593 -4.7307 1.7580 32 1 -0.0002 -6.0348 0.9929 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585310987.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:07 Heat of formation + Delta-G solvation = 24.310286 kcal Electronic energy + Delta-G solvation = -17718.682644 eV Core-core repulsion = 14806.412570 eV Total energy + Delta-G solvation = -2912.270073 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.22505 -38.51316 -36.70457 -33.39895 -32.33206 -30.80826 -28.68998 -28.27689 -26.01710 -24.58743 -22.08236 -21.08583 -19.92453 -18.93930 -18.43033 -17.13241 -16.25819 -15.89533 -15.29403 -14.92537 -14.56012 -14.36262 -13.96582 -13.51376 -12.97869 -12.79348 -12.39885 -12.19843 -11.76433 -11.60139 -11.51549 -11.15751 -10.98631 -10.85085 -10.60615 -10.40825 -10.18535 -9.96374 -9.57469 -9.30051 -8.83186 -8.20415 -7.60256 -7.51109 -6.17229 -4.61129 0.73022 1.17809 1.73408 2.81186 3.15738 3.23085 3.26752 3.76598 4.12666 4.49868 4.56964 4.75440 4.87221 4.99478 5.13550 5.18010 5.46984 5.54222 5.67384 5.80293 5.84141 5.86765 6.05564 6.11428 6.24665 6.53296 6.71646 6.92438 7.46349 7.78442 7.95758 8.12399 8.36308 9.05213 9.55466 10.61837 10.80376 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.034227 B = 0.004216 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.875459 B = 6639.543951 C = 6819.566947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.581 6.581 11 N -0.754 5.754 12 C 0.153 3.847 13 H 0.092 0.908 14 C -0.130 4.130 15 C 0.040 3.960 16 N -0.430 5.430 17 C 0.229 3.771 18 N -0.516 5.516 19 C 0.063 3.937 20 C -0.289 4.289 21 S 0.125 5.875 22 C 0.041 3.959 23 H 0.268 0.732 24 H 0.382 0.618 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.089 0.911 29 H 0.174 0.826 30 H 0.174 0.826 31 H 0.095 0.905 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.046 -17.395 2.535 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.464 6.464 11 N -0.408 5.408 12 C 0.044 3.956 13 H 0.110 0.890 14 C -0.169 4.169 15 C -0.087 4.087 16 N -0.152 5.152 17 C -0.141 4.141 18 N -0.236 5.236 19 C -0.088 4.088 20 C -0.429 4.429 21 S 0.377 5.623 22 C -0.089 4.089 23 H 0.078 0.922 24 H 0.214 0.786 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.191 0.809 30 H 0.192 0.808 31 H 0.113 0.887 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.072 -16.908 2.335 18.116 hybrid contribution -0.474 0.330 0.559 0.804 sum 5.598 -16.578 2.894 17.735 Atomic orbital electron populations 1.70029 1.07062 1.27213 1.35316 1.25694 0.94573 1.00261 0.92617 0.86377 0.80278 0.81585 0.78622 1.19840 1.20498 1.18897 1.20886 0.94126 0.89602 1.53614 0.91401 1.18245 0.87173 0.82430 0.76285 1.90601 1.14058 1.86456 1.55238 1.46209 1.08489 1.04964 1.81178 1.21236 0.96448 0.85141 0.92753 0.89010 1.22682 1.01774 0.94976 0.97459 1.23358 1.02071 0.96972 0.86345 1.62593 1.38028 1.09858 1.04672 1.25428 0.91349 0.96586 1.00710 1.66927 1.19969 1.24388 1.12304 1.21594 0.99769 0.90546 0.96918 1.26768 0.97321 1.09035 1.09764 1.83795 1.18927 1.24215 1.35365 1.23753 0.90636 0.94271 1.00225 0.92159 0.78558 0.90158 0.89824 0.92521 0.89248 0.80927 0.80818 0.88661 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.11 11.85 55.55 0.66 -22.45 16 2 C 0.09 2.47 5.49 -17.37 -0.10 2.38 16 3 Si 0.91 20.26 29.56 -169.99 -5.03 15.24 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.55 -15.42 9.53 -35.63 -0.34 -15.76 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 15.63 7.74 -12.98 -0.10 15.53 16 10 O -0.58 -18.62 14.70 5.20 0.08 -18.55 16 11 N -0.75 -16.55 5.06 -53.87 -0.27 -16.82 16 12 C 0.15 2.85 3.41 -66.55 -0.23 2.62 16 13 H 0.09 1.91 7.56 -51.93 -0.39 1.52 16 14 C -0.13 -1.75 6.75 -25.34 -0.17 -1.92 16 15 C 0.04 0.49 6.29 -2.09 -0.01 0.48 16 16 N -0.43 -6.76 5.46 -170.82 -0.93 -7.69 16 17 C 0.23 3.45 6.51 -87.68 -0.57 2.88 16 18 N -0.52 -8.25 9.19 -15.21 -0.14 -8.39 16 19 C 0.06 0.79 11.34 -19.14 -0.22 0.57 16 20 C -0.29 -3.03 11.34 29.02 0.33 -2.70 16 21 S 0.13 1.44 23.03 -107.50 -2.48 -1.04 16 22 C 0.04 0.76 5.77 -2.18 -0.01 0.75 16 23 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 24 H 0.38 7.51 8.34 -40.82 -0.34 7.17 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.06 7.67 -51.93 -0.40 0.66 16 27 H 0.06 0.66 7.97 -51.93 -0.41 0.25 16 28 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 31 H 0.10 2.12 8.05 -51.93 -0.42 1.70 16 32 H 0.07 1.28 7.37 -51.93 -0.38 0.90 16 LS Contribution 289.87 15.07 4.37 4.37 Total: -1.00 -34.71 289.87 -8.75 -43.46 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -3.58 Total: 7.03 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -1.42 Total: 4.84 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.69 Total: -55.35 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.08 Total: -18.55 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.24 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.48 Total: -1.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.71 -8.75 -43.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585310987.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.768 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds