Wall clock time and date at job start Mon Mar 30 2020 05:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33414 * 125.96502 * 2 1 4 4 N 1.32017 * 114.56813 * 179.82986 * 3 2 1 5 5 C 1.29625 * 116.91139 * 0.47700 * 4 3 2 6 6 N 1.39000 * 124.94843 * 179.76450 * 5 4 3 7 7 C 1.34776 * 120.00025 * 359.97117 * 6 5 4 8 8 O 1.21583 * 120.00047 * 0.02562 * 7 6 5 9 9 N 1.34781 * 120.00212 * 180.02562 * 7 6 5 10 10 C 1.47062 * 136.05465 * 359.63083 * 9 7 6 11 11 C 1.53759 * 87.88699 * 152.96581 * 10 9 7 12 12 C 1.50700 * 114.26775 * 139.79599 * 11 10 9 13 13 H 1.08009 * 119.99438 * 266.46836 * 12 11 10 14 14 C 1.37868 * 120.00341 * 86.47213 * 12 11 10 15 15 N 1.31512 * 120.00110 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99839 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47306 * 60.00246 * 16 14 12 18 18 H 1.48505 * 109.47198 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47312 * 299.99827 * 16 14 12 20 20 C 1.47063 * 136.05913 * 180.02562 * 9 7 6 21 21 S 1.70966 * 110.10626 * 359.73858 * 5 4 3 22 22 H 1.09002 * 109.47152 * 179.71352 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.71453 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.71433 * 1 2 3 25 25 H 1.07999 * 122.71617 * 0.02562 * 3 2 1 26 26 H 0.97003 * 120.00293 * 179.97438 * 6 5 4 27 27 H 1.09003 * 113.46432 * 267.69351 * 10 9 7 28 28 H 1.08999 * 113.47440 * 38.13412 * 10 9 7 29 29 H 1.09000 * 114.39045 * 272.67243 * 11 10 9 30 30 H 0.97003 * 119.99730 * 180.02562 * 15 14 12 31 31 H 1.09007 * 113.46727 * 321.86085 * 20 9 7 32 32 H 1.09001 * 113.46980 * 92.24051 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2906 1.0798 0.0000 4 7 3.5847 0.8190 0.0036 5 6 3.9314 -0.4300 -0.0030 6 7 5.2423 -0.8925 -0.0054 7 6 6.2661 -0.0160 -0.0012 8 8 6.0431 1.1792 0.0051 9 7 7.5371 -0.4644 -0.0040 10 6 8.1962 -1.7790 -0.0045 11 6 9.3925 -1.1156 -0.7065 12 6 10.7374 -1.5890 -0.2184 13 1 11.2491 -1.0478 0.5638 14 6 11.3147 -2.7127 -0.7705 15 7 10.6920 -3.3714 -1.7233 16 14 12.9822 -3.2990 -0.1659 17 1 12.9011 -3.6125 1.2834 18 1 13.3792 -4.5187 -0.9141 19 1 13.9916 -2.2323 -0.3859 20 6 8.8752 0.1457 -0.0009 21 16 2.5417 -1.4258 -0.0077 22 1 -0.3633 -1.0277 -0.0051 23 1 -0.3633 0.5183 -0.8874 24 1 -0.3633 0.5094 0.8926 25 1 1.8979 2.0859 0.0004 26 1 5.4202 -1.8460 -0.0101 27 1 8.4291 -2.1481 0.9943 28 1 7.6862 -2.5202 -0.6199 29 1 9.3155 -1.0835 -1.7933 30 1 11.0981 -4.1622 -2.1114 31 1 8.9438 1.0448 -0.6134 32 1 9.2867 0.2847 0.9989 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596458631.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:43 Heat of formation + Delta-G solvation = 45.213362 kcal Electronic energy + Delta-G solvation = -17289.042784 eV Core-core repulsion = 14377.679136 eV Total energy + Delta-G solvation = -2911.363648 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.76505 -40.53678 -38.98284 -36.06806 -34.65123 -33.04533 -30.92016 -27.85115 -26.79685 -26.65157 -25.17356 -23.01312 -21.46294 -20.49816 -19.45763 -18.69560 -18.06428 -17.66820 -16.99291 -16.48235 -16.36046 -15.82765 -15.41864 -15.09160 -14.49581 -14.08969 -13.93360 -13.84160 -13.55094 -13.27132 -13.18824 -12.75001 -12.62265 -12.17996 -12.12908 -11.80473 -11.74828 -11.11660 -11.05319 -10.54701 -10.35891 -10.21996 -9.69196 -9.07447 -8.15978 -6.27019 -0.26089 -0.12129 0.63281 1.40135 1.50481 1.52079 1.58894 1.73600 2.21470 2.45751 2.64413 3.14675 3.59781 4.11237 4.19657 4.30705 4.37285 4.47159 4.66747 4.69825 4.83015 4.84258 4.90665 4.93612 4.96552 5.15673 5.35320 5.60129 5.79457 5.82188 6.23213 6.79803 6.81869 6.96128 7.39071 7.44202 8.93764 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.050485 B = 0.003673 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.492159 B = 7621.172347 C = 8028.871943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.232 4.232 3 C 0.034 3.966 4 N -0.525 5.525 5 C 0.253 3.747 6 N -0.636 5.636 7 C 0.719 3.281 8 O -0.588 6.588 9 N -0.660 5.660 10 C 0.111 3.889 11 C 0.027 3.973 12 C -0.528 4.528 13 H 0.068 0.932 14 C 0.023 3.977 15 N -0.918 5.918 16 Si 0.958 3.042 17 H -0.267 1.267 18 H -0.288 1.288 19 H -0.273 1.273 20 C 0.129 3.871 21 S 0.177 5.823 22 H 0.081 0.919 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.191 0.809 26 H 0.430 0.570 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 -0.389 3.983 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.355 4.355 3 C -0.115 4.115 4 N -0.246 5.246 5 C -0.115 4.115 6 N -0.289 5.289 7 C 0.420 3.580 8 O -0.464 6.464 9 N -0.399 5.399 10 C -0.012 4.012 11 C 0.007 3.993 12 C -0.566 4.566 13 H 0.086 0.914 14 C -0.178 4.178 15 N -0.556 5.556 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.198 1.198 20 C 0.006 3.994 21 S 0.427 5.573 22 H 0.100 0.900 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.208 0.792 26 H 0.269 0.731 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.229 -0.286 3.868 18.637 hybrid contribution 1.006 0.147 0.058 1.019 sum -17.223 -0.138 3.926 17.665 Atomic orbital electron populations 1.20337 0.83576 1.04263 1.04464 1.26270 1.03027 0.92988 1.13229 1.21828 0.85255 1.01668 1.02779 1.66531 1.19609 1.17815 1.20676 1.23578 0.90700 0.93009 1.04167 1.41934 1.00780 1.10495 1.75725 1.15512 0.79614 0.84514 0.78389 1.90949 1.83043 1.14952 1.57494 1.49113 1.02331 1.13344 1.75082 1.23491 0.92066 0.84680 1.00919 1.20245 0.93100 0.90796 0.95142 1.21169 1.03293 1.11191 1.20978 0.91379 1.25736 1.00830 0.96658 0.94529 1.70046 1.40087 1.18912 1.26510 0.85607 0.79883 0.77468 0.78673 1.19184 1.21351 1.19813 1.23196 0.76796 0.98469 1.00906 1.83550 0.93746 1.08874 1.71155 0.90006 0.88961 0.88887 0.79179 0.73103 0.89715 0.91801 0.94132 0.92621 0.92557 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.71 10.41 71.24 0.74 0.04 16 2 C -0.23 -4.63 6.58 24.59 0.16 -4.47 16 3 C 0.03 0.91 11.24 83.57 0.94 1.85 16 4 N -0.52 -19.07 8.65 -201.76 -1.74 -20.82 16 5 C 0.25 8.22 8.02 179.21 1.44 9.66 16 6 N -0.64 -21.65 5.41 -327.47 -1.77 -23.42 16 7 C 0.72 30.53 8.76 179.05 1.57 32.09 16 8 O -0.59 -29.48 15.75 -3.98 -0.06 -29.54 16 9 N -0.66 -27.20 3.69 -876.04 -3.23 -30.43 16 10 C 0.11 4.45 7.87 83.26 0.66 5.10 16 11 C 0.03 1.24 3.79 -11.11 -0.04 1.20 16 12 C -0.53 -26.22 8.83 25.60 0.23 -25.99 16 13 H 0.07 3.26 7.81 -2.91 -0.02 3.23 16 14 C 0.02 1.16 5.46 84.65 0.46 1.62 16 15 N -0.92 -49.19 13.26 21.44 0.28 -48.91 16 16 Si 0.96 40.06 29.54 68.60 2.03 42.09 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 18 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 C 0.13 5.40 8.17 83.18 0.68 6.08 16 21 S 0.18 3.78 23.22 -56.49 -1.31 2.47 16 22 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 26 H 0.43 11.85 8.54 -92.71 -0.79 11.06 16 27 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 28 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 30 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 31 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 32 H 0.09 3.38 8.10 -2.39 -0.02 3.36 16 Total: -1.00 -67.91 297.70 1.38 -66.54 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.36 Total: 14.84 kcal Atomic # 6 Polarization: 20.35 SS G_CDS: 6.83 Total: 27.18 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -6.46 Total: -123.57 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.06 Total: -29.54 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.31 Total: 2.47 kcal Total: -67.91 1.38 -66.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596458631.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.748 kcal (2) G-P(sol) polarization free energy of solvation -67.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds