Wall clock time and date at job start Mon Mar 30 2020 05:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.39076 * 119.99977 * 180.02562 * 14 12 2 16 16 N 1.29879 * 125.65306 * 0.02562 * 15 14 12 17 17 N 1.26256 * 117.66205 * 179.97438 * 16 15 14 18 18 C 1.29524 * 116.57880 * 0.02562 * 17 16 15 19 19 C 1.50698 * 126.14687 * 180.02562 * 18 17 16 20 20 C 1.52993 * 117.49945 * 8.76666 * 19 18 17 21 21 C 1.52999 * 117.49548 * 300.10648 * 19 18 17 22 22 S 1.71316 * 125.64973 * 179.71695 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 27 27 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 28 28 H 1.09002 * 115.54773 * 154.43982 * 19 18 17 29 29 H 1.09003 * 117.50003 * 0.02562 * 20 19 18 30 30 H 1.09004 * 117.49973 * 145.01698 * 20 19 18 31 31 H 1.09000 * 117.49583 * 214.97868 * 21 19 18 32 32 H 1.08993 * 117.49938 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1701 -0.9056 -3.5902 16 7 2.9191 -1.9666 -3.5990 17 7 3.2525 -2.4394 -4.7212 18 6 2.8120 -1.8152 -5.7671 19 6 3.0756 -2.1901 -7.2027 20 6 3.7664 -3.5292 -7.4677 21 6 4.5325 -2.2194 -7.6690 22 16 1.8410 -0.4522 -5.2091 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1615 3.4845 27 1 1.1489 0.5386 -2.5435 28 1 2.3240 -1.8607 -7.9202 29 1 4.0298 -4.1393 -6.6037 30 1 3.4694 -4.0809 -8.3597 31 1 4.7393 -1.9098 -8.6935 32 1 5.3002 -1.9671 -6.9376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596837739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:30 Heat of formation + Delta-G solvation = 57.680204 kcal Electronic energy + Delta-G solvation = -17361.306288 eV Core-core repulsion = 14450.483242 eV Total energy + Delta-G solvation = -2910.823045 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09825 -39.16953 -37.34785 -34.65454 -33.91913 -30.91829 -29.76467 -26.54668 -25.26463 -23.94556 -22.60734 -22.49743 -20.69089 -19.56039 -18.27221 -17.17226 -16.38346 -16.21557 -15.79475 -15.44965 -14.58591 -14.44671 -14.10668 -13.37338 -13.23561 -12.73717 -12.50845 -11.89179 -11.72834 -11.46927 -11.11121 -10.97706 -10.87412 -10.78388 -10.66095 -10.38814 -10.31304 -10.06674 -9.93475 -9.45561 -9.13537 -8.82546 -8.45356 -8.36820 -6.13548 -4.17761 0.60157 0.67641 1.29524 2.71006 3.15732 3.33239 3.35340 3.42674 3.52467 3.65142 4.14672 4.39884 4.58214 4.63964 4.76532 4.95863 5.20427 5.41292 5.51450 5.58877 5.83901 5.85679 5.97217 6.37189 6.45773 6.63881 6.73131 7.24608 7.46951 7.68361 7.92775 8.14329 8.74683 8.91326 8.94520 9.48550 10.94059 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.044514 B = 0.004084 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.862805 B = 6855.059451 C = 7337.621414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.039 3.961 3 H 0.060 0.940 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.904 3.096 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.508 3.492 13 O -0.467 6.467 14 N -0.634 5.634 15 C 0.251 3.749 16 N -0.278 5.278 17 N -0.225 5.225 18 C 0.017 3.983 19 C -0.084 4.084 20 C -0.151 4.151 21 C -0.158 4.158 22 S 0.080 5.920 23 H 0.035 0.965 24 H 0.099 0.901 25 H 0.013 0.987 26 H 0.263 0.737 27 H 0.421 0.579 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 0.319 -19.814 19.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 H 0.078 0.922 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.732 3.268 9 H -0.200 1.200 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.295 3.705 13 O -0.333 6.333 14 N -0.287 5.287 15 C -0.119 4.119 16 N -0.123 5.123 17 N -0.061 5.061 18 C -0.265 4.265 19 C -0.106 4.106 20 C -0.190 4.190 21 C -0.197 4.197 22 S 0.321 5.679 23 H 0.054 0.946 24 H 0.117 0.883 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.259 0.741 28 H 0.146 0.854 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.412 -0.476 -19.157 19.167 hybrid contribution -0.157 0.170 0.818 0.850 sum 0.255 -0.306 -18.339 18.344 Atomic orbital electron populations 1.21817 0.96037 1.00295 1.01322 1.18958 0.94429 0.96996 0.87830 0.92218 1.21072 1.31660 1.13157 0.88698 0.90578 1.24931 0.94875 0.94998 0.99182 1.69849 1.36729 1.22896 1.23963 0.86437 0.79384 0.79729 0.81247 1.20042 1.21271 1.20044 1.22817 0.79309 0.85233 0.83101 1.90695 1.33496 1.24315 1.84754 1.44118 1.51489 1.30519 1.02606 1.26308 0.97681 0.95144 0.92728 1.71577 1.15340 1.09298 1.16094 1.71356 1.18159 1.23671 0.92865 1.28712 1.02357 0.95742 0.99668 1.20251 0.97792 1.04416 0.88160 1.23075 1.01903 0.90100 1.03937 1.23102 0.92670 1.01338 1.02549 1.84541 1.51955 1.31910 0.99527 0.94583 0.88253 0.96847 0.92683 0.74098 0.85432 0.87278 0.87854 0.87774 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.04 0.95 2.64 -92.92 -0.25 0.70 16 3 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 4 C -0.51 -14.10 8.37 -34.44 -0.29 -14.39 16 5 H 0.08 2.25 6.75 -52.48 -0.35 1.89 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.90 -24.40 11.32 55.43 0.63 -23.77 16 8 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 12 C 0.51 11.60 7.11 -10.99 -0.08 11.52 16 13 O -0.47 -12.54 14.14 5.55 0.08 -12.46 16 14 N -0.63 -11.35 5.30 -12.92 -0.07 -11.42 16 15 C 0.25 4.49 8.14 -87.07 -0.71 3.78 16 16 N -0.28 -5.82 9.74 29.97 0.29 -5.53 16 17 N -0.22 -4.05 11.24 33.58 0.38 -3.67 16 18 C 0.02 0.24 7.33 -13.25 -0.10 0.14 16 19 C -0.08 -0.80 6.33 -91.78 -0.58 -1.38 16 20 C -0.15 -1.32 10.14 -26.70 -0.27 -1.59 16 21 C -0.16 -1.31 10.24 -26.69 -0.27 -1.58 16 22 S 0.08 1.01 23.31 -107.50 -2.51 -1.49 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 25 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.42 5.85 8.24 -40.82 -0.34 5.52 16 28 H 0.13 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.11 1.18 7.91 -51.93 -0.41 0.77 16 30 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 294.08 15.07 4.43 4.43 Total: -1.00 -32.83 294.08 -7.58 -40.40 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.48 Total: 0.81 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.31 Total: -3.88 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 1.23 Total: -44.39 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.08 Total: -12.46 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.83 -7.58 -40.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596837739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.082 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds