Wall clock time and date at job start Mon Mar 30 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47385 * 59.99525 * 8 6 4 10 10 H 1.48500 * 109.47279 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47348 * 299.99599 * 8 6 4 12 12 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 13 13 O 1.21288 * 120.00038 * 239.99878 * 12 2 1 14 14 N 1.34777 * 120.00369 * 59.99719 * 12 2 1 15 15 C 1.39076 * 119.99977 * 180.02562 * 14 12 2 16 16 N 1.29879 * 125.65306 * 0.02562 * 15 14 12 17 17 N 1.26256 * 117.66205 * 179.97438 * 16 15 14 18 18 C 1.29524 * 116.57880 * 0.02562 * 17 16 15 19 19 C 1.50698 * 126.14687 * 180.02562 * 18 17 16 20 20 C 1.52993 * 117.49945 * 8.76666 * 19 18 17 21 21 C 1.52999 * 117.49548 * 300.10648 * 19 18 17 22 22 S 1.71316 * 125.64973 * 179.71695 * 15 14 12 23 23 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 25 25 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 26 26 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 27 27 H 0.96995 * 119.99691 * 359.97438 * 14 12 2 28 28 H 1.09002 * 115.54773 * 154.43982 * 19 18 17 29 29 H 1.09003 * 117.50003 * 0.02562 * 20 19 18 30 30 H 1.09004 * 117.49973 * 145.01698 * 20 19 18 31 31 H 1.09000 * 117.49583 * 214.97868 * 21 19 18 32 32 H 1.08993 * 117.49938 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.8064 -1.1211 4.0081 10 1 1.8269 -0.4202 5.2204 11 1 1.8259 -2.5204 4.0076 12 6 2.0324 -0.7103 -1.2305 13 8 2.7297 -1.6964 -1.1193 14 7 1.7068 -0.2498 -2.4546 15 6 2.1701 -0.9056 -3.5902 16 7 2.9191 -1.9666 -3.5990 17 7 3.2525 -2.4394 -4.7212 18 6 2.8120 -1.8152 -5.7671 19 6 3.0756 -2.1901 -7.2027 20 6 3.7664 -3.5292 -7.4677 21 6 4.5325 -2.2194 -7.6690 22 16 1.8410 -0.4522 -5.2091 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7094 1.1615 3.4845 27 1 1.1489 0.5386 -2.5435 28 1 2.3240 -1.8607 -7.9202 29 1 4.0298 -4.1393 -6.6037 30 1 3.4694 -4.0809 -8.3597 31 1 4.7393 -1.9098 -8.6935 32 1 5.3002 -1.9671 -6.9376 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596837739.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:29 Heat of formation + Delta-G solvation = 35.448074 kcal Electronic energy + Delta-G solvation = -17362.270345 eV Core-core repulsion = 14450.483242 eV Total energy + Delta-G solvation = -2911.787103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.41892 -40.81049 -38.16387 -36.21419 -35.89365 -32.76904 -31.14668 -27.81971 -27.24208 -25.39720 -23.89280 -23.26277 -22.15305 -20.84822 -19.65625 -18.63546 -18.15822 -17.56910 -17.19075 -16.70446 -16.51664 -15.82998 -15.33163 -15.01973 -14.57054 -14.49046 -13.65517 -13.35910 -13.03350 -12.92112 -12.72669 -12.66064 -12.38190 -12.27373 -12.06363 -11.88094 -11.70958 -11.45313 -11.15040 -11.08637 -10.65178 -10.49630 -10.41307 -9.73351 -8.20851 -6.31297 -0.60085 -0.49576 0.11532 1.35902 1.40294 1.41253 1.49715 1.81177 1.88550 2.41576 2.89317 3.09544 3.12884 3.61897 3.84388 3.93174 4.07016 4.21955 4.54435 4.66956 4.81313 4.83989 4.91813 4.97136 4.98883 5.15415 5.29599 5.40544 5.68727 5.80196 6.05823 6.27501 6.75039 7.09519 7.37342 7.66340 8.84843 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.044514 B = 0.004084 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.862805 B = 6855.059451 C = 7337.621414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.036 3.964 3 H 0.058 0.942 4 C -0.537 4.537 5 H 0.047 0.953 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 0.954 3.046 9 H -0.278 1.278 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.516 3.484 13 O -0.520 6.520 14 N -0.621 5.621 15 C 0.206 3.794 16 N -0.330 5.330 17 N -0.271 5.271 18 C 0.025 3.975 19 C -0.098 4.098 20 C -0.152 4.152 21 C -0.144 4.144 22 S 0.194 5.806 23 H 0.023 0.977 24 H 0.078 0.922 25 H 0.059 0.941 26 H 0.268 0.732 27 H 0.440 0.560 28 H 0.166 0.834 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 1.382 -22.712 22.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.015 3.985 3 H 0.075 0.925 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.544 5.544 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.303 3.697 13 O -0.390 6.390 14 N -0.275 5.275 15 C -0.164 4.164 16 N -0.175 5.175 17 N -0.106 5.106 18 C -0.257 4.257 19 C -0.121 4.121 20 C -0.191 4.191 21 C -0.183 4.183 22 S 0.436 5.564 23 H 0.042 0.958 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.281 0.719 28 H 0.183 0.817 29 H 0.098 0.902 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.528 0.632 -22.100 22.116 hybrid contribution 0.142 -0.142 1.465 1.478 sum -0.386 0.490 -20.636 20.645 Atomic orbital electron populations 1.21639 0.94229 0.99831 1.02543 1.18864 0.95806 0.96288 0.87562 0.92466 1.21206 1.32254 1.13025 0.91027 0.93520 1.25504 0.94997 0.95673 1.01163 1.69908 1.36691 1.23179 1.24659 0.85672 0.78635 0.78738 0.78966 1.20367 1.19551 1.20361 1.22386 0.78535 0.84326 0.84447 1.90670 1.35883 1.26499 1.85924 1.43418 1.51532 1.30893 1.01700 1.26402 0.99070 0.95920 0.94966 1.71521 1.16465 1.11000 1.18489 1.71345 1.20636 1.25382 0.93229 1.29699 0.99915 0.95151 1.00892 1.20732 0.99787 1.05427 0.86131 1.23139 1.01857 0.89990 1.04097 1.23193 0.90897 1.00508 1.03744 1.84052 1.49391 1.29146 0.93789 0.95783 0.90300 0.92210 0.92300 0.71888 0.81683 0.90151 0.84700 0.84212 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.87 71.98 0.64 -4.76 16 2 C 0.04 1.79 2.64 -12.29 -0.03 1.75 16 3 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 4 C -0.54 -30.93 8.37 25.60 0.21 -30.72 16 5 H 0.05 2.92 6.75 -2.91 -0.02 2.90 16 6 C 0.03 1.48 5.30 84.65 0.45 1.93 16 7 N -0.91 -49.47 11.32 21.45 0.24 -49.23 16 8 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 9 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.52 24.26 7.11 87.66 0.62 24.88 16 13 O -0.52 -29.45 14.14 -3.05 -0.04 -29.49 16 14 N -0.62 -22.07 5.30 -313.16 -1.66 -23.73 16 15 C 0.21 7.29 8.14 179.11 1.46 8.75 16 16 N -0.33 -14.20 9.74 -59.10 -0.58 -14.78 16 17 N -0.27 -9.88 11.24 -47.67 -0.54 -10.41 16 18 C 0.03 0.66 7.33 88.45 0.65 1.30 16 19 C -0.10 -1.55 6.33 -11.54 -0.07 -1.63 16 20 C -0.15 -2.29 10.14 30.62 0.31 -1.98 16 21 C -0.14 -1.95 10.24 30.62 0.31 -1.64 16 22 S 0.19 4.34 23.31 -56.49 -1.32 3.03 16 23 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.08 3.77 6.07 -2.39 -0.01 3.76 16 25 H 0.06 1.97 7.56 -2.39 -0.02 1.96 16 26 H 0.27 13.86 8.31 -92.70 -0.77 13.09 16 27 H 0.44 11.50 8.24 -92.71 -0.76 10.74 16 28 H 0.17 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.08 1.72 7.91 -2.39 -0.02 1.71 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -76.11 294.08 3.09 -73.02 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 0.40 Total: 6.76 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 4.55 Total: -2.10 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -2.53 Total: -98.15 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.04 Total: -29.49 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.32 Total: 3.03 kcal Total: -76.11 3.09 -73.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596837739.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.466 kcal (2) G-P(sol) polarization free energy of solvation -76.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds