Wall clock time and date at job start Mon Mar 30 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47374 * 2 1 4 4 N 1.31239 * 124.05610 * 269.98280 * 3 2 1 5 5 N 1.27334 * 120.04023 * 180.02562 * 4 3 2 6 6 S 1.56645 * 109.73599 * 359.69458 * 5 4 3 7 7 C 1.38237 * 124.05387 * 89.99786 * 3 2 1 8 8 C 1.47172 * 128.47958 * 359.97438 * 7 3 2 9 9 O 1.21632 * 119.99561 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00458 * 179.97438 * 8 7 3 11 11 C 1.47586 * 134.49328 * 179.97438 * 10 8 7 12 12 C 1.53950 * 86.11354 * 155.35990 * 11 10 8 13 13 C 1.50706 * 113.73627 * 137.95493 * 12 11 10 14 14 H 1.07995 * 120.00167 * 1.64697 * 13 12 11 15 15 C 1.37879 * 119.99394 * 181.92396 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.47813 * 134.45830 * 359.86815 * 10 8 7 22 22 H 1.08996 * 109.46888 * 59.99708 * 1 2 3 23 23 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47089 * 299.99869 * 1 2 3 25 25 H 1.09011 * 109.47378 * 240.00294 * 2 1 3 26 26 H 1.08994 * 109.47384 * 120.00161 * 2 1 3 27 27 H 1.09008 * 113.76654 * 41.06222 * 11 10 8 28 28 H 1.08993 * 113.87299 * 269.67700 * 11 10 8 29 29 H 1.09000 * 113.74485 * 269.15566 * 12 11 10 30 30 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 31 31 H 1.09002 * 113.76703 * 90.37825 * 21 10 8 32 32 H 1.08998 * 113.83277 * 318.91803 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2777 2.1136 -1.0873 5 7 2.7016 3.3110 -0.9981 6 16 2.8358 3.7137 0.5097 7 6 2.2904 2.1506 1.1453 8 6 2.1426 1.7344 2.5492 9 8 1.7459 0.6153 2.8130 10 7 2.4469 2.5931 3.5423 11 6 2.4206 2.5210 5.0162 12 6 3.4922 3.6259 4.9848 13 6 3.2818 4.7045 6.0161 14 1 2.4530 4.6383 6.7054 15 6 4.1442 5.7786 6.0759 16 7 5.1500 5.8622 5.2327 17 14 3.8839 7.1152 7.3547 18 1 3.9563 6.5210 8.7136 19 1 4.9383 8.1508 7.2099 20 1 2.5498 7.7368 7.1566 21 6 2.9428 3.9846 3.5921 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.7792 1.5725 5.4162 28 1 1.4753 2.8381 5.4566 29 1 4.5138 3.2462 4.9694 30 1 5.7564 6.6181 5.2746 31 1 2.1504 4.7329 3.6118 32 1 3.7174 4.2027 2.8570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598035083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:29 Heat of formation + Delta-G solvation = 61.397672 kcal Electronic energy + Delta-G solvation = -17821.681157 eV Core-core repulsion = 14911.019313 eV Total energy + Delta-G solvation = -2910.661844 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.83725 -39.46285 -37.16570 -34.25284 -32.81227 -30.81336 -29.23249 -27.25756 -25.48183 -25.19162 -23.77245 -21.92808 -20.23946 -18.53775 -18.28532 -17.00902 -16.53967 -15.85305 -15.68738 -14.82134 -14.49722 -14.46184 -14.11880 -13.42091 -13.18449 -12.68447 -12.47030 -12.32072 -11.95209 -11.79689 -11.47511 -11.37331 -11.08479 -10.91204 -10.89460 -10.58049 -10.08072 -9.90483 -9.68532 -9.63765 -9.39701 -9.19555 -8.69886 -8.11033 -6.28306 -4.34990 -0.10243 0.99838 1.64980 2.06170 3.16545 3.19666 3.25907 3.27065 3.32254 3.96880 4.25383 4.66300 4.70099 5.02296 5.17664 5.30419 5.33863 5.78954 5.85511 5.89741 5.96361 6.07417 6.14193 6.21479 6.24704 6.34403 6.40045 6.59002 7.40210 7.68675 7.76444 8.01173 8.15857 8.40348 8.68575 9.32935 10.81237 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.005250 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.814714 B = 5332.307881 C = 6017.352529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C 0.088 3.912 4 N -0.255 5.255 5 N -0.278 5.278 6 S 0.439 5.561 7 C -0.274 4.274 8 C 0.607 3.393 9 O -0.539 6.539 10 N -0.632 5.632 11 C 0.109 3.891 12 C 0.038 3.962 13 C -0.523 4.523 14 H 0.065 0.935 15 C 0.070 3.930 16 N -0.885 5.885 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.092 3.908 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.105 0.895 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.266 0.734 31 H 0.085 0.915 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -5.036 -7.059 10.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.060 4.060 4 N -0.120 5.120 5 N -0.258 5.258 6 S 0.576 5.424 7 C -0.415 4.415 8 C 0.394 3.606 9 O -0.419 6.419 10 N -0.365 5.365 11 C -0.012 4.012 12 C 0.019 3.981 13 C -0.561 4.561 14 H 0.083 0.917 15 C -0.134 4.134 16 N -0.521 5.521 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.031 4.031 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.078 0.922 25 H 0.102 0.898 26 H 0.123 0.877 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.103 0.897 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.608 -4.066 -8.284 10.314 hybrid contribution -0.449 -0.236 1.058 1.174 sum -5.056 -4.301 -7.226 9.812 Atomic orbital electron populations 1.21650 0.93680 1.02366 1.02087 1.20230 0.96718 0.86706 1.04711 1.22909 0.98033 0.99727 0.85293 1.70623 1.13898 0.99378 1.28126 1.78684 1.18915 1.10581 1.17667 1.83112 1.45659 1.14208 0.99432 1.27894 1.13474 0.99814 1.00270 1.16170 0.78255 0.84826 0.81386 1.90743 1.48327 1.19967 1.82911 1.50497 1.62662 1.15772 1.07618 1.23582 1.00944 1.00529 0.76114 1.20485 0.94443 0.92086 0.91092 1.20899 1.12974 1.05430 1.16802 0.91705 1.25015 0.94526 0.98202 0.95662 1.69922 1.15179 1.30851 1.36166 0.86583 0.78009 0.81174 0.81870 1.19996 1.21170 1.20027 1.24079 0.97132 0.80129 1.01732 0.92750 0.91505 0.92197 0.89819 0.87674 0.91437 0.90152 0.91482 0.92401 0.89722 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.29 16 2 C -0.04 -0.56 5.95 -27.88 -0.17 -0.73 16 3 C 0.09 1.38 6.25 -82.84 -0.52 0.86 16 4 N -0.25 -4.17 11.54 33.42 0.39 -3.78 16 5 N -0.28 -4.52 12.51 60.35 0.75 -3.76 16 6 S 0.44 6.65 20.86 -107.50 -2.24 4.41 16 7 C -0.27 -4.58 6.76 -35.96 -0.24 -4.82 16 8 C 0.61 11.33 8.04 -12.64 -0.10 11.23 16 9 O -0.54 -10.83 15.62 5.25 0.08 -10.75 16 10 N -0.63 -11.94 3.61 -179.57 -0.65 -12.59 16 11 C 0.11 2.07 8.39 -2.96 -0.02 2.04 16 12 C 0.04 0.83 3.60 -90.84 -0.33 0.50 16 13 C -0.52 -12.41 8.77 -34.44 -0.30 -12.72 16 14 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.88 -22.71 13.29 55.43 0.74 -21.98 16 17 Si 0.90 19.11 29.54 -169.99 -5.02 14.09 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 21 C 0.09 1.78 7.09 -2.83 -0.02 1.76 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.11 1.49 6.47 -51.93 -0.34 1.16 16 27 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 28 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 29 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 31 H 0.08 1.60 8.09 -51.93 -0.42 1.18 16 32 H 0.07 1.29 6.68 -51.93 -0.35 0.94 16 LS Contribution 292.81 15.07 4.41 4.41 Total: -1.00 -26.59 292.81 -6.58 -33.16 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -3.60 Total: -1.68 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.43 Total: -1.54 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.23 Total: -42.11 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Atomic # 16 Polarization: 6.65 SS G_CDS: -2.24 Total: 4.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.59 -6.58 -33.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.561 kcal (2) G-P(sol) polarization free energy of solvation -26.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds