Wall clock time and date at job start Mon Mar 30 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47374 * 2 1 4 4 N 1.31239 * 124.05610 * 269.98280 * 3 2 1 5 5 N 1.27334 * 120.04023 * 180.02562 * 4 3 2 6 6 S 1.56645 * 109.73599 * 359.69458 * 5 4 3 7 7 C 1.38237 * 124.05387 * 89.99786 * 3 2 1 8 8 C 1.47172 * 128.47958 * 359.97438 * 7 3 2 9 9 O 1.21632 * 119.99561 * 359.97438 * 8 7 3 10 10 N 1.34770 * 120.00458 * 179.97438 * 8 7 3 11 11 C 1.47586 * 134.49328 * 179.97438 * 10 8 7 12 12 C 1.53950 * 86.11354 * 155.35990 * 11 10 8 13 13 C 1.50706 * 113.73627 * 137.95493 * 12 11 10 14 14 H 1.07995 * 120.00167 * 1.64697 * 13 12 11 15 15 C 1.37879 * 119.99394 * 181.92396 * 13 12 11 16 16 N 1.31514 * 120.00338 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99424 * 180.02562 * 15 13 12 18 18 H 1.48490 * 109.47405 * 60.00219 * 17 15 13 19 19 H 1.48503 * 109.46845 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47399 * 299.99813 * 17 15 13 21 21 C 1.47813 * 134.45830 * 359.86815 * 10 8 7 22 22 H 1.08996 * 109.46888 * 59.99708 * 1 2 3 23 23 H 1.09003 * 109.46855 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47089 * 299.99869 * 1 2 3 25 25 H 1.09011 * 109.47378 * 240.00294 * 2 1 3 26 26 H 1.08994 * 109.47384 * 120.00161 * 2 1 3 27 27 H 1.09008 * 113.76654 * 41.06222 * 11 10 8 28 28 H 1.08993 * 113.87299 * 269.67700 * 11 10 8 29 29 H 1.09000 * 113.74485 * 269.15566 * 12 11 10 30 30 H 0.96996 * 119.99730 * 179.97438 * 16 15 13 31 31 H 1.09002 * 113.76703 * 90.37825 * 21 10 8 32 32 H 1.08998 * 113.83277 * 318.91803 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2777 2.1136 -1.0873 5 7 2.7016 3.3110 -0.9981 6 16 2.8358 3.7137 0.5097 7 6 2.2904 2.1506 1.1453 8 6 2.1426 1.7344 2.5492 9 8 1.7459 0.6153 2.8130 10 7 2.4469 2.5931 3.5423 11 6 2.4206 2.5210 5.0162 12 6 3.4922 3.6259 4.9848 13 6 3.2818 4.7045 6.0161 14 1 2.4530 4.6383 6.7054 15 6 4.1442 5.7786 6.0759 16 7 5.1500 5.8622 5.2327 17 14 3.8839 7.1152 7.3547 18 1 3.9563 6.5210 8.7136 19 1 4.9383 8.1508 7.2099 20 1 2.5498 7.7368 7.1566 21 6 2.9428 3.9846 3.5921 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 2.7792 1.5725 5.4162 28 1 1.4753 2.8381 5.4566 29 1 4.5138 3.2462 4.9694 30 1 5.7564 6.6181 5.2746 31 1 2.1504 4.7329 3.6118 32 1 3.7174 4.2027 2.8570 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598035083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:29 Heat of formation + Delta-G solvation = 45.826472 kcal Electronic energy + Delta-G solvation = -17822.356375 eV Core-core repulsion = 14911.019313 eV Total energy + Delta-G solvation = -2911.337062 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.10960 -40.98495 -38.70805 -35.38946 -34.63009 -32.14226 -30.67923 -28.64314 -27.01153 -26.89198 -24.88799 -23.30467 -21.78162 -19.98203 -19.55390 -18.71768 -18.04884 -17.16956 -17.13392 -16.53330 -16.09271 -15.64730 -15.17852 -14.98186 -14.55890 -14.07175 -13.95942 -13.56840 -13.34573 -13.18016 -13.10381 -12.79365 -12.61426 -12.40819 -12.24151 -11.94234 -11.55851 -11.40985 -11.04508 -10.93806 -10.87135 -10.85170 -10.52799 -9.65223 -8.14225 -6.24965 -1.39600 -0.25990 0.38542 0.79309 1.51641 1.53461 1.59516 1.71054 1.86413 2.48569 2.74707 3.16790 3.27722 3.46307 4.05489 4.23559 4.31058 4.33528 4.37507 4.52961 4.66810 4.75251 4.80861 4.85937 4.98088 5.00995 5.13121 5.28580 5.61608 5.83663 6.22242 6.49904 6.64529 6.83274 6.90903 7.45443 8.95165 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.030802 B = 0.005250 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.814714 B = 5332.307881 C = 6017.352529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.044 4.044 3 C 0.097 3.903 4 N -0.265 5.265 5 N -0.286 5.286 6 S 0.476 5.524 7 C -0.301 4.301 8 C 0.610 3.390 9 O -0.556 6.556 10 N -0.635 5.635 11 C 0.117 3.883 12 C 0.026 3.974 13 C -0.530 4.530 14 H 0.069 0.931 15 C 0.026 3.974 16 N -0.915 5.915 17 Si 0.953 3.047 18 H -0.273 1.273 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.104 3.896 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.040 0.960 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.091 0.909 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.972 -5.082 -7.422 10.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.085 4.085 3 C -0.051 4.051 4 N -0.130 5.130 5 N -0.267 5.267 6 S 0.613 5.387 7 C -0.441 4.441 8 C 0.397 3.603 9 O -0.437 6.437 10 N -0.368 5.368 11 C -0.004 4.004 12 C 0.006 3.994 13 C -0.568 4.568 14 H 0.087 0.913 15 C -0.175 4.175 16 N -0.553 5.553 17 Si 0.779 3.221 18 H -0.198 1.198 19 H -0.216 1.216 20 H -0.193 1.193 21 C -0.019 4.019 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.059 0.941 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.091 0.909 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.520 -4.116 -8.646 11.053 hybrid contribution -0.156 -0.256 1.147 1.185 sum -5.676 -4.372 -7.499 10.372 Atomic orbital electron populations 1.21626 0.92517 1.03723 1.01374 1.20368 0.97611 0.85296 1.05237 1.23304 0.96639 1.00495 0.84705 1.70675 1.14568 0.99440 1.28320 1.78596 1.18842 1.10826 1.18394 1.82965 1.44310 1.12973 0.98416 1.27752 1.15577 1.01177 0.99599 1.16283 0.77656 0.84388 0.81929 1.90729 1.49031 1.20512 1.83398 1.50419 1.63034 1.15601 1.07735 1.23494 1.00531 0.99876 0.76463 1.20396 0.93939 0.92838 0.92216 1.21219 1.12785 1.05702 1.17087 0.91306 1.25669 0.94443 1.00122 0.97240 1.70021 1.16087 1.31481 1.37738 0.85689 0.77882 0.78800 0.79762 1.19833 1.21560 1.19334 1.23857 0.97169 0.80562 1.00291 0.92188 0.89181 0.94074 0.87611 0.88729 0.90852 0.88888 0.94136 0.92613 0.89063 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.89 71.98 0.71 -2.22 16 2 C -0.04 -1.09 5.95 29.85 0.18 -0.92 16 3 C 0.10 2.90 6.25 42.65 0.27 3.17 16 4 N -0.27 -8.26 11.54 -48.19 -0.56 -8.82 16 5 N -0.29 -8.87 12.51 37.02 0.46 -8.41 16 6 S 0.48 13.85 20.86 -56.49 -1.18 12.67 16 7 C -0.30 -9.74 6.76 24.62 0.17 -9.57 16 8 C 0.61 22.26 8.04 86.59 0.70 22.96 16 9 O -0.56 -21.88 15.62 -4.13 -0.06 -21.95 16 10 N -0.63 -23.48 3.61 -840.29 -3.04 -26.51 16 11 C 0.12 4.34 8.39 86.49 0.73 5.07 16 12 C 0.03 1.10 3.60 -10.87 -0.04 1.06 16 13 C -0.53 -24.87 8.77 25.60 0.22 -24.65 16 14 H 0.07 3.11 7.81 -2.91 -0.02 3.09 16 15 C 0.03 1.27 5.46 84.66 0.46 1.73 16 16 N -0.92 -47.14 13.29 21.45 0.28 -46.86 16 17 Si 0.95 38.72 29.54 68.60 2.03 40.74 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 21 C 0.10 3.95 7.09 86.44 0.61 4.56 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 24 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.09 2.58 6.47 -2.39 -0.02 2.56 16 27 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 28 H 0.09 3.20 8.09 -2.39 -0.02 3.18 16 29 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.26 13.14 8.31 -92.71 -0.77 12.36 16 31 H 0.09 3.35 8.09 -2.39 -0.02 3.33 16 32 H 0.07 2.61 6.68 -2.39 -0.02 2.59 16 Total: -1.00 -54.75 292.81 3.09 -51.67 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 1.14 Total: 6.26 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 4.01 Total: 1.20 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -2.84 Total: -90.59 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.06 Total: -21.95 kcal Atomic # 14 Polarization: 38.72 SS G_CDS: 2.03 Total: 40.74 kcal Atomic # 16 Polarization: 13.85 SS G_CDS: -1.18 Total: 12.67 kcal Total: -54.75 3.09 -51.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598035083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.492 kcal (2) G-P(sol) polarization free energy of solvation -54.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds