Wall clock time and date at job start Mon Mar 30 2020 04:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72188 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72311 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72121 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.07999 * 119.99931 * 180.27548 * 7 2 1 9 9 N 1.36935 * 119.99986 * 0.27719 * 7 2 1 10 10 C 1.46507 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.08998 * 108.64431 * 35.00628 * 10 9 7 12 12 C 1.52139 * 108.68459 * 153.10936 * 10 9 7 13 13 S 1.81994 * 107.87500 * 174.12594 * 12 10 9 14 14 O 1.42108 * 108.89438 * 49.00740 * 13 12 10 15 15 O 1.42103 * 108.89744 * 180.91189 * 13 12 10 16 16 C 1.81264 * 99.94017 * 294.96345 * 13 12 10 17 17 C 1.50823 * 110.54168 * 47.01423 * 16 13 12 18 18 C 1.39612 * 114.91517 * 160.56235 * 17 16 13 19 19 C 1.37590 * 121.30785 * 179.37183 * 18 17 16 20 20 C 1.38289 * 119.29064 * 359.93601 * 19 18 17 21 21 C 1.37478 * 119.52035 * 0.34091 * 20 19 18 22 22 C 1.36807 * 125.49047 * 340.32063 * 17 16 13 23 23 H 0.97001 * 120.00638 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00077 * 0.02562 * 9 7 2 25 25 H 1.09005 * 109.77798 * 293.71826 * 12 10 9 26 26 H 1.08996 * 109.77990 * 54.47673 * 12 10 9 27 27 H 1.08996 * 109.26613 * 167.29395 * 16 13 12 28 28 H 1.09005 * 109.26270 * 286.78121 * 16 13 12 29 29 H 1.07994 * 119.34957 * 359.39971 * 18 17 16 30 30 H 1.08000 * 120.35308 * 179.91476 * 19 18 17 31 31 H 1.08001 * 120.24092 * 180.36610 * 20 19 18 32 32 H 1.07997 * 119.27016 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0068 5 1 1.8967 2.3934 -1.2160 6 1 1.8865 2.3993 1.2091 7 6 2.0101 -1.2022 0.0059 8 1 3.0901 -1.2023 0.0104 9 7 1.3254 -2.3881 0.0059 10 6 2.0578 -3.6569 0.0115 11 1 2.9624 -3.5344 0.6072 12 6 1.1859 -4.7202 0.6625 13 16 2.0402 -6.3190 0.5009 14 8 3.3878 -6.1656 0.9250 15 8 1.2333 -7.3330 1.0841 16 6 2.0101 -6.5090 -1.3015 17 6 2.4462 -5.2322 -1.9757 18 6 2.8656 -5.3795 -3.2991 19 6 3.2790 -4.2981 -4.0426 20 6 3.2773 -3.0408 -3.4669 21 6 2.8702 -2.8938 -2.1620 22 6 2.4520 -3.9916 -1.3991 23 1 -0.4851 -0.8400 -0.0004 24 1 0.3554 -2.3880 0.0015 25 1 1.0414 -4.4840 1.7168 26 1 0.2203 -4.7644 0.1588 27 1 2.6840 -7.3159 -1.5894 28 1 0.9973 -6.7556 -1.6203 29 1 2.8652 -6.3615 -3.7484 30 1 3.6016 -4.4299 -5.0648 31 1 3.5930 -2.1804 -4.0383 32 1 2.8708 -1.9101 -1.7163 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598644490.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:15 Heat of formation + Delta-G solvation = -44.283658 kcal Electronic energy + Delta-G solvation = -18519.272495 eV Core-core repulsion = 15571.735214 eV Total energy + Delta-G solvation = -2947.537281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.78846 -38.16387 -37.50483 -37.18312 -34.90359 -33.72262 -31.03369 -30.51394 -28.44688 -25.89547 -24.38098 -23.00709 -21.72267 -19.83630 -19.56383 -17.80614 -17.71690 -17.14633 -17.11637 -16.61767 -15.99286 -15.79392 -15.49653 -15.33231 -14.72081 -14.58297 -14.07126 -13.73392 -13.40257 -13.32338 -13.18912 -13.05513 -12.70909 -12.53556 -12.39844 -12.10324 -11.90421 -11.81198 -11.44653 -11.18383 -11.02148 -9.63871 -9.60447 -9.23506 -8.41386 -5.37330 -1.03614 0.38317 0.52439 1.55987 1.58665 1.67260 1.79166 2.57389 2.65698 2.84057 2.89565 3.32464 3.35739 3.60586 3.75014 3.86196 3.96778 4.01541 4.20556 4.36519 4.45297 4.56121 4.67856 4.79456 4.87706 5.12254 5.26005 5.50957 5.54850 5.68537 5.80265 6.16350 6.46692 7.00661 7.90122 8.02097 9.09386 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.020591 B = 0.007527 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.481174 B = 3718.911057 C = 4669.345046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.094 4.094 3 Si 1.123 2.877 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.325 4.325 8 H 0.071 0.929 9 N -0.732 5.732 10 C 0.226 3.774 11 H 0.062 0.938 12 C -0.604 4.604 13 S 2.447 3.553 14 O -0.968 6.968 15 O -0.964 6.964 16 C -0.543 4.543 17 C -0.079 4.079 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.138 4.138 21 C -0.124 4.124 22 C -0.124 4.124 23 H 0.248 0.752 24 H 0.366 0.634 25 H 0.140 0.860 26 H 0.151 0.849 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.158 0.842 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.821 -13.311 -7.115 15.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.286 4.286 3 Si 0.948 3.052 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.456 4.456 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.733 4.733 13 S 2.632 3.368 14 O -0.965 6.965 15 O -0.961 6.961 16 C -0.674 4.674 17 C -0.081 4.081 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.156 4.156 21 C -0.142 4.142 22 C -0.127 4.127 23 H 0.059 0.941 24 H 0.199 0.801 25 H 0.158 0.842 26 H 0.169 0.831 27 H 0.193 0.807 28 H 0.195 0.805 29 H 0.175 0.825 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.263 -12.236 -6.365 14.763 hybrid contribution -0.762 -0.655 -0.335 1.059 sum 4.500 -12.891 -6.700 15.209 Atomic orbital electron populations 1.70920 1.07179 1.28244 1.55394 1.27013 0.97045 1.04232 1.00323 0.82671 0.73987 0.71977 0.76529 1.19552 1.21732 1.22021 1.20257 0.92286 0.86391 1.46647 0.91075 1.42579 1.04721 1.00687 1.89467 1.18502 0.93916 0.85534 0.90445 0.92002 1.30348 1.13228 1.18788 1.10922 1.07038 0.74653 0.76129 0.78999 1.93547 1.35383 1.86455 1.81097 1.93561 1.71038 1.55286 1.76191 1.29093 1.13891 1.03099 1.21289 1.18696 1.02429 0.90581 0.96368 1.21572 0.99108 1.00592 0.92726 1.21414 0.99174 0.92064 1.00986 1.21364 1.00432 0.98938 0.94907 1.22233 0.96250 1.00516 0.95225 1.20742 1.00590 0.93221 0.98123 0.94144 0.80055 0.84209 0.83086 0.80668 0.80538 0.82460 0.82840 0.85160 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.09 13.70 21.65 0.30 -57.80 16 2 C -0.09 -5.17 5.50 84.86 0.47 -4.70 16 3 Si 1.12 50.30 29.92 68.60 2.05 52.35 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.32 -17.08 7.32 84.04 0.61 -16.47 16 8 H 0.07 3.71 7.27 -2.91 -0.02 3.69 16 9 N -0.73 -34.55 4.76 -328.54 -1.56 -36.11 16 10 C 0.23 8.68 2.49 43.82 0.11 8.79 16 11 H 0.06 2.58 7.99 -2.39 -0.02 2.56 16 12 C -0.60 -17.74 5.88 71.70 0.42 -17.31 16 13 S 2.45 62.49 5.41 -56.49 -0.31 62.18 16 14 O -0.97 -32.20 17.78 -127.42 -2.27 -34.46 16 15 O -0.96 -28.04 18.11 -127.42 -2.31 -30.35 16 16 C -0.54 -10.14 6.04 71.27 0.43 -9.71 16 17 C -0.08 -2.13 5.76 -19.83 -0.11 -2.25 16 18 C -0.12 -2.78 9.43 22.45 0.21 -2.57 16 19 C -0.12 -2.88 10.06 22.13 0.22 -2.66 16 20 C -0.14 -4.31 10.05 22.10 0.22 -4.09 16 21 C -0.12 -4.80 9.00 22.54 0.20 -4.60 16 22 C -0.12 -4.38 5.59 -19.90 -0.11 -4.49 16 23 H 0.25 14.70 6.77 -92.71 -0.63 14.07 16 24 H 0.37 17.86 6.62 -92.71 -0.61 17.24 16 25 H 0.14 4.01 8.14 -2.38 -0.02 3.99 16 26 H 0.15 3.78 8.14 -2.39 -0.02 3.76 16 27 H 0.18 2.13 8.06 -2.40 -0.02 2.11 16 28 H 0.18 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.16 2.30 7.99 -2.91 -0.02 2.27 16 30 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 31 H 0.13 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.13 5.89 4.36 -2.91 -0.01 5.88 16 Total: -1.00 -74.53 277.72 -0.74 -75.27 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 0.68 Total: 28.98 kcal Atomic # 6 Polarization: -62.74 SS G_CDS: 2.68 Total: -60.06 kcal Atomic # 7 Polarization: -92.64 SS G_CDS: -1.27 Total: -93.91 kcal Atomic # 8 Polarization: -60.24 SS G_CDS: -4.57 Total: -64.82 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.05 Total: 52.35 kcal Atomic # 16 Polarization: 62.49 SS G_CDS: -0.31 Total: 62.18 kcal Total: -74.53 -0.74 -75.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598644490.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.989 kcal (2) G-P(sol) polarization free energy of solvation -74.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds