Wall clock time and date at job start Mon Mar 30 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76200 * 99.99802 * 2 1 4 4 C 1.39759 * 120.49432 * 180.02562 * 3 2 1 5 5 C 1.38058 * 118.46202 * 180.02562 * 4 3 2 6 6 N 1.32544 * 119.28845 * 359.97438 * 5 4 3 7 7 C 1.32388 * 120.95684 * 0.02562 * 6 5 4 8 8 N 1.38932 * 119.16082 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00403 * 359.97438 * 8 7 6 10 10 O 1.21260 * 119.99566 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00087 * 180.02562 * 9 8 7 12 12 H 1.08999 * 109.47355 * 300.00042 * 11 9 8 13 13 C 1.53003 * 109.47293 * 60.00197 * 11 9 8 14 14 C 1.50704 * 109.47018 * 180.02562 * 11 9 8 15 15 H 1.08000 * 119.99811 * 359.97438 * 14 11 9 16 16 C 1.37872 * 120.00006 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99887 * 179.97438 * 16 14 11 18 18 Si 1.86800 * 120.00282 * 359.97438 * 16 14 11 19 19 H 1.48503 * 109.46986 * 89.99943 * 18 16 14 20 20 H 1.48493 * 109.47287 * 210.00004 * 18 16 14 21 21 H 1.48498 * 109.47049 * 330.00036 * 18 16 14 22 22 N 1.32365 * 121.67507 * 0.02562 * 7 6 5 23 23 H 1.09003 * 109.46690 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47025 * 299.99458 * 1 2 3 25 25 H 1.09002 * 109.46890 * 60.00032 * 1 2 3 26 26 H 1.07996 * 120.77201 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.35803 * 180.02562 * 5 4 3 28 28 H 0.97003 * 120.00057 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.46971 * 180.02562 * 13 11 9 30 30 H 1.09001 * 109.46744 * 299.99761 * 13 11 9 31 31 H 1.08999 * 109.47047 * 59.99656 * 13 11 9 32 32 H 0.97008 * 120.00022 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4251 2.2246 -0.0005 5 6 3.6164 3.5919 0.0000 6 7 2.5614 4.3942 0.0005 7 6 1.3321 3.9028 0.0010 8 7 0.2532 4.7781 0.0021 9 6 0.4651 6.1091 0.0031 10 8 1.5975 6.5427 0.0036 11 6 -0.7053 7.0584 0.0049 12 1 -1.3118 6.8891 -0.8848 13 6 -1.5548 6.8185 1.2546 14 6 -0.2003 8.4783 0.0052 15 1 0.8619 8.6737 0.0046 16 6 -1.0943 9.5279 0.0061 17 7 -0.6536 10.7670 0.0069 18 14 -2.9315 9.1900 0.0064 19 1 -3.4179 9.0995 1.4066 20 1 -3.6378 10.2934 -0.6926 21 1 -3.1992 7.9085 -0.6944 22 7 1.1048 2.5988 0.0015 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 4.2675 1.5489 -0.0005 27 1 4.6149 4.0033 -0.0008 28 1 -0.6528 4.4313 0.0028 29 1 -2.4016 7.5048 1.2556 30 1 -1.9200 5.7915 1.2539 31 1 -0.9482 6.9878 2.1442 32 1 -1.2826 11.5055 0.0080 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598842926.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:28 Heat of formation + Delta-G solvation = 35.220679 kcal Electronic energy + Delta-G solvation = -17667.891638 eV Core-core repulsion = 14756.094674 eV Total energy + Delta-G solvation = -2911.796963 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.03518 -38.93020 -34.63741 -34.00525 -33.63737 -31.53913 -30.48148 -29.16732 -25.22439 -25.01681 -24.46163 -22.50152 -19.98234 -18.66195 -17.45392 -16.82679 -16.38929 -15.69058 -15.52469 -15.38657 -14.81409 -14.28433 -14.15645 -13.97109 -13.65152 -13.29949 -12.80882 -12.62371 -12.38232 -11.75946 -11.28773 -11.16204 -11.05364 -11.00838 -10.77567 -10.62371 -10.36484 -9.70618 -9.30064 -9.19072 -8.75649 -8.65639 -8.59240 -7.94258 -6.10741 -4.12486 0.92738 1.05518 1.19023 1.84466 2.95648 3.19067 3.25772 3.29178 3.33078 3.98459 4.27214 4.32316 4.66877 4.88465 4.94429 4.97973 5.13866 5.17969 5.44279 5.58352 5.60998 6.01093 6.07575 6.17188 6.31667 6.58585 6.59591 7.00003 7.05010 7.32213 7.57242 8.30543 8.47340 8.83996 9.07906 9.46550 11.01871 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.035475 B = 0.004566 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.095178 B = 6130.632324 C = 6824.110685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.056 6.056 3 C 0.188 3.812 4 C -0.255 4.255 5 C 0.191 3.809 6 N -0.505 5.505 7 C 0.561 3.439 8 N -0.648 5.648 9 C 0.518 3.482 10 O -0.451 6.451 11 C 0.003 3.997 12 H 0.057 0.943 13 C -0.148 4.148 14 C -0.510 4.510 15 H 0.095 0.905 16 C 0.073 3.927 17 N -0.892 5.892 18 Si 0.883 3.117 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.267 1.267 22 N -0.564 5.564 23 H 0.101 0.899 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.147 0.853 27 H 0.174 0.826 28 H 0.417 0.583 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.060 0.940 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.735 -21.905 0.345 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.180 5.820 3 C -0.070 4.070 4 C -0.286 4.286 5 C 0.023 3.977 6 N -0.226 5.226 7 C 0.203 3.797 8 N -0.299 5.299 9 C 0.304 3.696 10 O -0.315 6.315 11 C -0.019 4.019 12 H 0.075 0.925 13 C -0.205 4.205 14 C -0.548 4.548 15 H 0.113 0.887 16 C -0.129 4.129 17 N -0.529 5.529 18 Si 0.713 3.287 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.192 1.192 22 N -0.291 5.291 23 H 0.119 0.881 24 H 0.109 0.891 25 H 0.109 0.891 26 H 0.165 0.835 27 H 0.191 0.809 28 H 0.254 0.746 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.360 -21.573 0.343 21.704 hybrid contribution -1.720 0.178 0.052 1.730 sum 0.640 -21.395 0.395 21.408 Atomic orbital electron populations 1.23456 0.93571 1.06057 1.07338 1.85705 1.08401 0.97092 1.90773 1.23148 0.91535 0.98416 0.93943 1.22234 0.96906 0.98099 1.11387 1.23165 0.98249 0.88865 0.87411 1.68696 0.97647 1.38730 1.17548 1.19717 0.87104 0.84542 0.88337 1.44090 1.07201 1.06329 1.72274 1.21803 0.93195 0.79820 0.74736 1.90708 1.24222 1.75179 1.41352 1.19353 0.90893 0.95459 0.96150 0.92502 1.22164 0.99908 0.98619 0.99855 1.20890 0.96683 0.85868 1.51381 0.88670 1.24951 0.98451 0.94957 0.94553 1.69874 1.34799 0.98324 1.49945 0.86928 0.86141 0.77644 0.77951 1.20388 1.22148 1.19200 1.68087 1.34806 1.02485 1.23686 0.88057 0.89072 0.89077 0.83477 0.80926 0.74554 0.92869 0.94749 0.92107 0.92418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.68 101.05 0.98 -0.12 16 2 S -0.06 -0.55 22.74 -107.50 -2.44 -2.99 16 3 C 0.19 2.45 7.01 -16.49 -0.12 2.34 16 4 C -0.26 -3.04 9.94 -39.08 -0.39 -3.42 16 5 C 0.19 2.65 11.28 -17.31 -0.20 2.46 16 6 N -0.50 -9.41 7.87 -13.93 -0.11 -9.52 16 7 C 0.56 9.96 8.38 -322.34 -2.70 7.26 16 8 N -0.65 -11.55 5.29 -13.09 -0.07 -11.62 16 9 C 0.52 11.42 7.11 -10.99 -0.08 11.34 16 10 O -0.45 -11.63 13.65 5.57 0.08 -11.55 16 11 C 0.00 0.08 2.23 -92.92 -0.21 -0.13 16 12 H 0.06 1.24 7.20 -51.93 -0.37 0.87 16 13 C -0.15 -2.96 8.57 37.16 0.32 -2.64 16 14 C -0.51 -14.46 8.96 -34.44 -0.31 -14.77 16 15 H 0.10 3.08 7.00 -52.49 -0.37 2.71 16 16 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 17 N -0.89 -27.17 13.96 55.43 0.77 -26.40 16 18 Si 0.88 20.81 24.37 -169.99 -4.14 16.66 16 19 H -0.28 -6.31 6.87 56.52 0.39 -5.92 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.27 -5.80 6.53 56.52 0.37 -5.43 16 22 N -0.56 -8.49 9.32 -12.61 -0.12 -8.60 16 23 H 0.10 0.58 8.14 -51.91 -0.42 0.15 16 24 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.09 0.80 8.14 -51.91 -0.42 0.37 16 26 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 28 H 0.42 6.05 8.23 -40.82 -0.34 5.71 16 29 H 0.05 1.11 3.28 -51.93 -0.17 0.94 16 30 H 0.03 0.54 7.56 -51.93 -0.39 0.14 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 286.56 15.07 4.32 4.32 Total: -1.00 -34.01 286.56 -7.87 -41.88 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.36 Total: 3.54 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -2.80 Total: 4.29 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: 0.48 Total: -56.14 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.08 Total: -11.55 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.14 Total: 16.66 kcal Atomic # 16 Polarization: -0.55 SS G_CDS: -2.44 Total: -2.99 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.01 -7.87 -41.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598842926.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.097 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds