Wall clock time and date at job start Mon Mar 30 2020 05:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00000 * 2 1 4 4 H 1.48503 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46872 * 299.99782 * 3 2 1 6 6 H 1.48494 * 109.47467 * 59.99649 * 3 2 1 7 7 C 1.37874 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.17222 * 179.97438 * 9 7 2 11 11 N 1.47477 * 87.93472 * 139.67078 * 10 9 7 12 12 C 1.39138 * 111.00110 * 221.29962 * 11 10 9 13 13 N 1.32386 * 119.68060 * 0.02562 * 12 11 10 14 14 C 1.31967 * 121.65041 * 180.02562 * 13 12 11 15 15 C 1.38259 * 120.81820 * 0.02562 * 14 13 12 16 16 F 1.35107 * 120.36006 * 179.97438 * 15 14 13 17 17 C 1.39005 * 119.28113 * 359.97438 * 15 14 13 18 18 C 1.38353 * 118.48342 * 0.28300 * 17 15 14 19 19 N 1.48005 * 120.43715 * 179.71626 * 18 17 15 20 20 O 1.21795 * 120.00174 * 0.02562 * 19 18 17 21 21 O 1.21800 * 119.99577 * 179.97438 * 19 18 17 22 22 C 1.47484 * 87.83418 * 332.99360 * 11 10 9 23 23 H 0.97005 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.09001 * 113.38797 * 46.92191 * 9 7 2 25 25 H 1.09006 * 113.47487 * 24.90370 * 10 9 7 26 26 H 1.08998 * 113.53475 * 254.45456 * 10 9 7 27 27 H 1.08002 * 119.59075 * 179.97438 * 14 13 12 28 28 H 1.08002 * 120.75628 * 179.97438 * 17 15 14 29 29 H 1.08999 * 113.47818 * 141.78201 * 22 11 10 30 30 H 1.09003 * 113.47481 * 272.24185 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2074 -4.3584 0.9544 12 6 1.8878 -5.0478 1.9532 13 7 3.2113 -5.0776 1.9442 14 6 3.8958 -5.7199 2.8718 15 6 3.2484 -6.3899 3.8933 16 9 3.9584 -7.0450 4.8379 17 6 1.8591 -6.3823 3.9379 18 6 1.1708 -5.7044 2.9476 19 7 -0.3089 -5.6735 2.9497 20 8 -0.9288 -6.2471 3.8273 21 8 -0.9067 -5.0738 2.0742 22 6 0.8554 -2.9966 1.3979 23 1 -0.4850 0.8401 0.0004 24 1 0.4431 -2.5323 -0.7305 25 1 3.1389 -3.5651 0.4216 26 1 2.1871 -4.2535 -0.9622 27 1 4.9751 -5.7229 2.8320 28 1 1.3290 -6.8982 4.7249 29 1 -0.2047 -2.8724 1.6191 30 1 1.4994 -2.6184 2.1918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601194843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:41 Heat of formation + Delta-G solvation = 48.802388 kcal Electronic energy + Delta-G solvation = -20124.399744 eV Core-core repulsion = 16646.978551 eV Total energy + Delta-G solvation = -3477.421192 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.081 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.34464 -42.14103 -40.80873 -38.65014 -36.22281 -33.34484 -33.06173 -31.47844 -28.18918 -26.74958 -25.33750 -24.85576 -23.11607 -22.34317 -19.46909 -19.13108 -18.65161 -17.69609 -17.34986 -17.26533 -16.80973 -16.20370 -16.06189 -14.99564 -14.65763 -14.53610 -14.18975 -13.80402 -13.23556 -12.84627 -12.19387 -11.69078 -11.34697 -11.30213 -11.07149 -11.01817 -10.84385 -10.72286 -10.61290 -10.27938 -10.05377 -9.75907 -9.43734 -9.10277 -8.61001 -8.35336 -6.18517 -4.24340 -0.28409 0.45861 1.35445 1.47121 2.98086 3.21340 3.30305 3.33042 3.49694 3.57322 3.93107 4.14120 4.31035 4.39835 4.85891 4.89178 5.08949 5.17769 5.66558 5.81411 6.01998 6.10073 6.34428 6.48276 6.54660 6.59901 6.88563 7.30519 7.46959 7.59269 7.80484 7.91759 8.17620 8.79671 9.41452 10.90526 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.005884 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.753928 B = 4757.837727 C = 5492.089175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.063 0.937 9 C 0.048 3.952 10 C 0.001 3.999 11 N -0.426 5.426 12 C 0.354 3.646 13 N -0.475 5.475 14 C 0.153 3.847 15 C 0.010 3.990 16 F -0.121 7.121 17 C -0.030 4.030 18 C -0.089 4.089 19 N 0.036 4.964 20 O -0.196 6.196 21 O -0.095 6.095 22 C 0.026 3.974 23 H 0.264 0.736 24 H 0.075 0.925 25 H 0.092 0.908 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.172 0.828 29 H 0.090 0.910 30 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.312 -10.950 6.749 14.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.081 0.919 9 C 0.029 3.971 10 C -0.126 4.126 11 N -0.144 5.144 12 C 0.122 3.878 13 N -0.188 5.188 14 C -0.009 4.009 15 C -0.013 4.013 16 F -0.100 7.100 17 C -0.058 4.058 18 C -0.178 4.178 19 N 0.556 4.444 20 O -0.399 6.399 21 O -0.324 6.324 22 C -0.098 4.098 23 H 0.074 0.926 24 H 0.093 0.907 25 H 0.110 0.890 26 H 0.091 0.909 27 H 0.202 0.798 28 H 0.190 0.810 29 H 0.108 0.892 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.727 -10.922 5.955 14.142 hybrid contribution 0.347 0.507 1.360 1.492 sum 7.074 -10.415 7.314 14.560 Atomic orbital electron populations 1.69973 1.06008 1.27091 1.48466 1.25055 0.94870 0.99402 0.94259 0.86514 0.80164 0.83447 0.77790 1.19609 1.20709 1.20935 1.20997 0.92945 0.89682 1.51987 0.91897 1.20184 0.94438 0.91196 0.91266 1.24273 0.97134 0.96433 0.94776 1.66663 1.25354 1.15424 1.06935 1.20935 0.87751 0.90575 0.88572 1.68397 1.06052 1.18925 1.25428 1.23355 1.02081 0.88331 0.87133 1.18258 0.88832 1.02112 0.92102 1.91565 1.77354 1.78794 1.62240 1.21339 0.93053 0.94360 0.97013 1.21558 0.82087 1.11439 1.02724 1.43073 1.02153 0.99146 1.00038 1.94497 1.67423 1.46272 1.31712 1.94684 1.68796 1.39562 1.29354 1.24495 1.02259 0.79797 1.03241 0.92573 0.90712 0.88975 0.90871 0.79789 0.81008 0.89176 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 13.26 55.43 0.74 -23.51 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -13.26 8.82 -34.44 -0.30 -13.57 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.05 1.14 3.77 -91.24 -0.34 0.80 16 10 C 0.00 0.02 6.95 -7.55 -0.05 -0.03 16 11 N -0.43 -8.43 4.84 -182.66 -0.88 -9.31 16 12 C 0.35 6.16 5.85 -154.92 -0.91 5.25 16 13 N -0.47 -7.27 8.20 -12.36 -0.10 -7.37 16 14 C 0.15 1.74 11.16 -17.49 -0.20 1.55 16 15 C 0.01 0.12 7.34 -39.29 -0.29 -0.17 16 16 F -0.12 -1.24 17.28 2.25 0.04 -1.20 16 17 C -0.03 -0.38 9.65 -39.25 -0.38 -0.76 16 18 C -0.09 -1.44 6.87 -79.60 -0.55 -1.98 16 19 N 0.04 0.65 4.45 34.13 0.15 0.80 16 20 O -0.20 -3.44 18.52 -29.46 -0.55 -3.98 16 21 O -0.10 -1.91 15.52 -29.46 -0.46 -2.37 16 22 C 0.03 0.57 6.40 -7.55 -0.05 0.52 16 23 H 0.26 6.92 8.31 -40.82 -0.34 6.59 16 24 H 0.07 1.92 8.11 -51.93 -0.42 1.49 16 25 H 0.09 1.81 6.62 -51.93 -0.34 1.47 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.19 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.17 1.79 7.69 -52.49 -0.40 1.39 16 29 H 0.09 2.08 7.17 -51.93 -0.37 1.71 16 30 H 0.06 1.34 7.85 -51.93 -0.41 0.93 16 LS Contribution 274.97 15.07 4.14 4.14 Total: -1.00 -27.82 274.97 -7.44 -35.25 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -2.34 Total: -0.90 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -3.16 Total: -6.70 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: -0.10 Total: -39.38 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -1.00 Total: -6.35 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.82 -7.44 -35.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601194843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.056 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds