Wall clock time and date at job start Mon Mar 30 2020 05:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00000 * 2 1 4 4 H 1.48503 * 109.46872 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46872 * 299.99782 * 3 2 1 6 6 H 1.48494 * 109.47467 * 59.99649 * 3 2 1 7 7 C 1.37874 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00159 * 0.02562 * 7 2 1 10 10 C 1.53517 * 114.17222 * 179.97438 * 9 7 2 11 11 N 1.47477 * 87.93472 * 139.67078 * 10 9 7 12 12 C 1.39138 * 111.00110 * 221.29962 * 11 10 9 13 13 N 1.32386 * 119.68060 * 0.02562 * 12 11 10 14 14 C 1.31967 * 121.65041 * 180.02562 * 13 12 11 15 15 C 1.38259 * 120.81820 * 0.02562 * 14 13 12 16 16 F 1.35107 * 120.36006 * 179.97438 * 15 14 13 17 17 C 1.39005 * 119.28113 * 359.97438 * 15 14 13 18 18 C 1.38353 * 118.48342 * 0.28300 * 17 15 14 19 19 N 1.48005 * 120.43715 * 179.71626 * 18 17 15 20 20 O 1.21795 * 120.00174 * 0.02562 * 19 18 17 21 21 O 1.21800 * 119.99577 * 179.97438 * 19 18 17 22 22 C 1.47484 * 87.83418 * 332.99360 * 11 10 9 23 23 H 0.97005 * 119.99793 * 359.97438 * 1 2 3 24 24 H 1.09001 * 113.38797 * 46.92191 * 9 7 2 25 25 H 1.09006 * 113.47487 * 24.90370 * 10 9 7 26 26 H 1.08998 * 113.53475 * 254.45456 * 10 9 7 27 27 H 1.08002 * 119.59075 * 179.97438 * 14 13 12 28 28 H 1.08002 * 120.75628 * 179.97438 * 17 15 14 29 29 H 1.08999 * 113.47818 * 141.78201 * 22 11 10 30 30 H 1.09003 * 113.47481 * 272.24185 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 6 2.1495 -3.7438 0.0005 11 7 1.2074 -4.3584 0.9544 12 6 1.8878 -5.0478 1.9532 13 7 3.2113 -5.0776 1.9442 14 6 3.8958 -5.7199 2.8718 15 6 3.2484 -6.3899 3.8933 16 9 3.9584 -7.0450 4.8379 17 6 1.8591 -6.3823 3.9379 18 6 1.1708 -5.7044 2.9476 19 7 -0.3089 -5.6735 2.9497 20 8 -0.9288 -6.2471 3.8273 21 8 -0.9067 -5.0738 2.0742 22 6 0.8554 -2.9966 1.3979 23 1 -0.4850 0.8401 0.0004 24 1 0.4431 -2.5323 -0.7305 25 1 3.1389 -3.5651 0.4216 26 1 2.1871 -4.2535 -0.9622 27 1 4.9751 -5.7229 2.8320 28 1 1.3290 -6.8982 4.7249 29 1 -0.2047 -2.8724 1.6191 30 1 1.4994 -2.6184 2.1918 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601194843.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:40 Heat of formation + Delta-G solvation = 32.452392 kcal Electronic energy + Delta-G solvation = -20125.108733 eV Core-core repulsion = 16646.978551 eV Total energy + Delta-G solvation = -3478.130181 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.25900 -43.47934 -42.17728 -40.06880 -37.62128 -34.90814 -34.49705 -32.89491 -29.76410 -28.04150 -26.98208 -26.52451 -24.45248 -23.63615 -20.84617 -20.67678 -20.00773 -19.25493 -18.66559 -18.51211 -17.95278 -17.66731 -17.14035 -16.51574 -16.36948 -15.68742 -15.59400 -15.11824 -14.39203 -14.17337 -14.00555 -13.30133 -13.11287 -12.85221 -12.74083 -12.45666 -12.35979 -12.28636 -11.98695 -11.84341 -11.45274 -11.35474 -11.07360 -10.74053 -10.57776 -9.78667 -8.17427 -6.29891 -1.50146 -0.64249 0.05781 0.19834 1.42967 1.45580 1.56704 1.84800 2.29736 2.43508 2.46654 2.80304 3.11989 3.14606 3.33756 3.52984 3.83104 4.05400 4.20124 4.30708 4.44289 4.63494 4.81774 4.89257 4.94870 5.07294 5.21770 5.58058 5.77470 5.98637 6.14455 6.22926 6.48025 6.80274 7.39639 8.92383 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.022894 B = 0.005884 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.753928 B = 4757.837727 C = 5492.089175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.017 3.983 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.031 3.969 10 C 0.020 3.980 11 N -0.434 5.434 12 C 0.333 3.667 13 N -0.489 5.489 14 C 0.167 3.833 15 C 0.041 3.959 16 F -0.105 7.105 17 C -0.024 4.024 18 C -0.101 4.101 19 N 0.038 4.962 20 O -0.163 6.163 21 O -0.167 6.167 22 C 0.043 3.957 23 H 0.264 0.736 24 H 0.041 0.959 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.231 0.769 28 H 0.198 0.802 29 H 0.066 0.934 30 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.139 -12.304 8.532 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.209 1.209 7 C -0.565 4.565 8 H 0.085 0.915 9 C 0.012 3.988 10 C -0.107 4.107 11 N -0.152 5.152 12 C 0.101 3.899 13 N -0.202 5.202 14 C 0.006 3.994 15 C 0.017 3.983 16 F -0.084 7.084 17 C -0.051 4.051 18 C -0.190 4.190 19 N 0.553 4.447 20 O -0.378 6.378 21 O -0.379 6.379 22 C -0.082 4.082 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.117 0.883 26 H 0.101 0.899 27 H 0.248 0.752 28 H 0.215 0.785 29 H 0.084 0.916 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.562 -12.227 7.626 17.294 hybrid contribution -0.382 0.673 1.044 1.299 sum 9.180 -11.554 8.670 17.115 Atomic orbital electron populations 1.70107 1.07595 1.27786 1.50153 1.25856 0.95567 1.02835 0.94098 0.85492 0.79309 0.79239 0.77555 1.18454 1.20567 1.20892 1.21310 0.93224 0.90654 1.51322 0.91515 1.20069 0.94611 0.92492 0.91644 1.24031 0.96665 0.94467 0.95578 1.66510 1.26176 1.14532 1.07936 1.20784 0.88812 0.91435 0.88834 1.68377 1.04891 1.20056 1.26926 1.24077 1.03821 0.86067 0.85448 1.18147 0.88127 1.00451 0.91546 1.91628 1.76870 1.78262 1.61625 1.21617 0.93765 0.93381 0.96337 1.21617 0.80480 1.12976 1.03924 1.43378 1.03229 0.98508 0.99552 1.94439 1.68263 1.44374 1.30697 1.94720 1.69823 1.42423 1.30908 1.23970 1.00506 0.81974 1.01748 0.92672 0.94063 0.88258 0.89917 0.75240 0.78503 0.91596 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.69 13.26 21.45 0.28 -52.41 16 2 C 0.02 0.89 5.46 84.65 0.46 1.36 16 3 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.53 -27.57 8.82 25.60 0.23 -27.34 16 8 H 0.07 3.35 7.81 -2.91 -0.02 3.33 16 9 C 0.03 1.54 3.77 -11.20 -0.04 1.49 16 10 C 0.02 0.80 6.95 83.57 0.58 1.38 16 11 N -0.43 -17.62 4.84 -731.83 -3.54 -21.16 16 12 C 0.33 11.30 5.85 133.01 0.78 12.08 16 13 N -0.49 -13.70 8.20 -193.03 -1.58 -15.28 16 14 C 0.17 3.03 11.16 84.68 0.95 3.97 16 15 C 0.04 0.71 7.34 22.46 0.16 0.87 16 16 F -0.11 -1.58 17.28 44.97 0.78 -0.80 16 17 C -0.02 -0.52 9.65 22.48 0.22 -0.30 16 18 C -0.10 -3.11 6.87 36.61 0.25 -2.86 16 19 N 0.04 1.37 4.45 -45.93 -0.20 1.17 16 20 O -0.16 -5.49 18.52 18.89 0.35 -5.14 16 21 O -0.17 -7.09 15.52 18.89 0.29 -6.80 16 22 C 0.04 1.99 6.40 83.57 0.53 2.52 16 23 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 24 H 0.04 2.28 8.11 -2.39 -0.02 2.26 16 25 H 0.10 3.83 6.62 -2.38 -0.02 3.81 16 26 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 27 H 0.23 2.00 8.06 -2.91 -0.02 1.98 16 28 H 0.20 3.22 7.69 -2.91 -0.02 3.20 16 29 H 0.07 3.30 7.17 -2.39 -0.02 3.28 16 30 H 0.05 2.51 7.85 -2.39 -0.02 2.49 16 Total: -1.00 -63.01 274.97 3.71 -59.30 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: 1.19 Total: 4.12 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: 4.12 Total: -6.82 kcal Atomic # 7 Polarization: -82.64 SS G_CDS: -5.04 Total: -87.68 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.64 Total: -11.93 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.78 Total: -0.80 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -63.01 3.71 -59.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601194843.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.755 kcal (2) G-P(sol) polarization free energy of solvation -63.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds