Wall clock time and date at job start Mon Mar 30 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50703 * 109.47126 * 119.99756 * 2 1 3 5 5 H 1.07995 * 120.00280 * 120.00264 * 4 2 1 6 6 C 1.37880 * 119.99788 * 300.00197 * 4 2 1 7 7 N 1.31511 * 120.00327 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46979 * 120.00025 * 8 6 4 11 11 H 1.48496 * 109.47443 * 239.99733 * 8 6 4 12 12 C 1.50701 * 109.47180 * 239.99722 * 2 1 3 13 13 O 1.21280 * 119.99781 * 239.99561 * 12 2 1 14 14 N 1.34771 * 119.99622 * 60.00237 * 12 2 1 15 15 C 1.46505 * 119.99622 * 179.97438 * 14 12 2 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 14 12 17 17 O 1.21445 * 120.00149 * 359.97438 * 16 15 14 18 18 C 1.41234 * 119.99672 * 179.97438 * 16 15 14 19 19 C 1.37188 * 125.47530 * 179.97438 * 18 16 15 20 20 C 1.37206 * 113.24146 * 179.97438 * 19 18 16 21 21 C 1.34017 * 115.14432 * 0.02562 * 20 19 18 22 22 S 1.70609 * 111.00331 * 359.72443 * 21 20 19 23 23 H 1.08996 * 109.47129 * 60.00751 * 1 2 3 24 24 H 1.08998 * 109.46505 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46884 * 299.99674 * 1 2 3 26 26 H 0.97000 * 120.00354 * 180.02562 * 7 6 4 27 27 H 0.96996 * 120.00772 * 359.97438 * 14 12 2 28 28 H 1.09002 * 109.47068 * 299.99729 * 15 14 12 29 29 H 1.09001 * 109.47372 * 59.99816 * 15 14 12 30 30 H 1.07999 * 123.38239 * 359.97438 * 19 18 16 31 31 H 1.07998 * 122.42504 * 180.02562 * 20 19 18 32 32 H 1.08009 * 124.49732 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1465 -2.2868 3.6039 10 1 3.1466 -0.1871 4.8166 11 1 1.1661 -1.5865 4.8162 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1957 -0.9404 -3.6506 16 6 1.6927 -0.2304 -4.8812 17 8 0.9934 0.7562 -4.7698 18 6 2.0347 -0.7125 -6.1639 19 6 1.6405 -0.1567 -7.3545 20 6 2.1184 -0.8294 -8.4507 21 6 2.8773 -1.8993 -8.1759 22 16 3.0402 -2.1172 -6.4916 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7087 1.1614 3.4844 27 1 1.1489 0.5384 -2.5436 28 1 3.2857 -0.9399 -3.6505 29 1 1.8328 -1.9682 -3.6508 30 1 1.0165 0.7222 -7.4223 31 1 1.8989 -0.5192 -9.4616 32 1 3.3293 -2.5365 -8.9217 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613107854.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:54 Heat of formation + Delta-G solvation = -42.898519 kcal Electronic energy + Delta-G solvation = -17224.728882 eV Core-core repulsion = 14277.251665 eV Total energy + Delta-G solvation = -2947.477217 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09622 -38.56599 -37.56146 -33.87311 -33.67048 -31.10847 -30.34908 -27.74992 -25.11985 -24.98278 -22.50551 -21.11241 -19.69195 -19.38342 -17.67243 -16.59305 -16.11127 -16.07199 -15.63385 -15.05252 -14.69781 -14.33300 -14.08783 -13.72413 -13.16924 -13.10921 -12.74349 -12.63239 -12.49916 -12.13544 -11.44112 -11.21833 -10.99379 -10.67217 -10.64875 -10.21107 -10.10712 -9.90512 -9.23289 -8.94726 -8.91980 -8.64133 -8.52022 -8.30621 -5.99306 -4.02618 -0.02024 1.17843 1.57739 1.87938 2.67394 3.34952 3.42212 3.49614 3.62881 3.71978 4.14708 4.50911 4.59655 4.94617 5.03138 5.12302 5.33587 5.45230 5.45821 5.60547 5.85162 5.95684 6.25731 6.69601 6.89682 6.94630 7.00716 7.29194 7.52629 7.80615 8.02248 8.18056 8.46338 9.06572 9.21799 9.62681 11.08389 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.047610 B = 0.003712 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.969163 B = 7540.629859 C = 8038.355975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.030 3.970 3 H 0.054 0.946 4 C -0.500 4.500 5 H 0.075 0.925 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.739 5.739 15 C 0.072 3.928 16 C 0.418 3.582 17 O -0.444 6.444 18 C -0.305 4.305 19 C -0.044 4.044 20 C -0.159 4.159 21 C -0.228 4.228 22 S 0.242 5.758 23 H 0.014 0.986 24 H 0.031 0.969 25 H 0.094 0.906 26 H 0.260 0.740 27 H 0.406 0.594 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.997 -3.253 -21.998 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.009 3.991 3 H 0.072 0.928 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.312 3.688 13 O -0.422 6.422 14 N -0.397 5.397 15 C -0.054 4.054 16 C 0.296 3.704 17 O -0.321 6.321 18 C -0.423 4.423 19 C -0.077 4.077 20 C -0.190 4.190 21 C -0.367 4.367 22 S 0.510 5.490 23 H 0.033 0.967 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.070 0.930 27 H 0.243 0.757 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.172 0.828 31 H 0.163 0.837 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.847 -4.436 -20.795 21.453 hybrid contribution -0.659 0.902 -0.450 1.204 sum 2.188 -3.534 -21.245 21.648 Atomic orbital electron populations 1.21750 0.96429 0.99847 1.01112 1.18886 0.94272 0.96928 0.89036 0.92816 1.21190 1.30917 1.12803 0.88946 0.90669 1.24962 0.95145 0.95087 0.99128 1.69886 1.37126 1.23141 1.23417 0.86396 0.78592 0.79768 0.82483 1.19553 1.21076 1.21071 1.22057 0.78321 0.84246 0.84188 1.90525 1.38064 1.26912 1.86745 1.46149 1.55875 1.33252 1.04432 1.21456 1.01012 0.97809 0.85106 1.20236 0.77927 0.83698 0.88516 1.90593 1.29843 1.22939 1.88729 1.24095 1.13017 1.06033 0.99195 1.21042 0.97218 0.99451 0.90017 1.20063 1.01467 0.96816 1.00652 1.25607 1.05408 1.03411 1.02225 1.83365 1.43980 1.23976 0.97696 0.96716 0.94995 0.88785 0.93020 0.75690 0.88590 0.88596 0.82841 0.83725 0.81243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.87 37.16 0.33 -2.86 16 2 C 0.03 0.76 2.64 -92.92 -0.25 0.52 16 3 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 4 C -0.50 -14.40 8.37 -34.44 -0.29 -14.69 16 5 H 0.08 2.27 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.58 11.32 55.43 0.63 -24.95 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.52 12.22 7.15 -10.99 -0.08 12.14 16 13 O -0.55 -14.22 15.46 5.56 0.09 -14.13 16 14 N -0.74 -13.92 5.42 -61.47 -0.33 -14.25 16 15 C 0.07 1.09 5.45 -5.19 -0.03 1.06 16 16 C 0.42 5.75 7.00 -33.17 -0.23 5.52 16 17 O -0.44 -7.14 16.04 5.41 0.09 -7.05 16 18 C -0.30 -3.38 6.23 -38.83 -0.24 -3.62 16 19 C -0.04 -0.42 9.95 -40.34 -0.40 -0.82 16 20 C -0.16 -1.20 10.14 -41.44 -0.42 -1.62 16 21 C -0.23 -1.58 10.93 29.25 0.32 -1.26 16 22 S 0.24 2.05 22.42 -107.50 -2.41 -0.36 16 23 H 0.01 0.29 7.56 -51.93 -0.39 -0.10 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.41 7.32 6.85 -40.82 -0.28 7.04 16 28 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.10 1.40 8.14 -51.93 -0.42 0.97 16 30 H 0.15 1.39 8.02 -52.49 -0.42 0.97 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.17 0.72 8.06 -52.48 -0.42 0.30 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -32.69 295.80 -7.32 -40.01 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.43 Total: 3.42 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.38 Total: -4.11 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.29 Total: -39.21 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.17 Total: -21.19 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.41 Total: -0.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.69 -7.32 -40.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613107854.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.891 kcal (2) G-P(sol) polarization free energy of solvation -32.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds