Wall clock time and date at job start Mon Mar 30 2020 04:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86808 * 119.99679 * 2 1 4 4 H 1.48498 * 109.46965 * 270.00272 * 3 2 1 5 5 H 1.48501 * 109.47110 * 30.00100 * 3 2 1 6 6 H 1.48500 * 109.46757 * 150.00258 * 3 2 1 7 7 C 1.38809 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99658 * 157.27031 * 7 2 1 9 9 N 1.36941 * 120.00342 * 337.26752 * 7 2 1 10 10 C 1.46495 * 119.99929 * 146.05420 * 9 7 2 11 11 C 1.50697 * 109.47248 * 270.00166 * 10 9 7 12 12 C 1.35350 * 127.92495 * 89.70439 * 11 10 9 13 13 N 1.31745 * 112.46354 * 179.84781 * 12 11 10 14 14 N 1.27569 * 118.27569 * 0.48496 * 13 12 11 15 15 S 1.56519 * 109.22321 * 359.72351 * 14 13 12 16 16 C 1.46493 * 119.99458 * 326.05706 * 9 7 2 17 17 C 1.52998 * 109.47650 * 265.62682 * 16 9 7 18 18 F 1.39901 * 109.47141 * 59.99954 * 17 16 9 19 19 F 1.39901 * 109.47622 * 180.02562 * 17 16 9 20 20 F 1.39904 * 109.46953 * 300.00737 * 17 16 9 21 21 H 0.96993 * 120.00266 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47556 * 30.00251 * 10 9 7 23 23 H 1.09003 * 109.46589 * 150.00769 * 10 9 7 24 24 H 1.07995 * 123.76143 * 0.02769 * 12 11 10 25 25 H 1.09005 * 109.47769 * 25.62913 * 16 9 7 26 26 H 1.09007 * 109.47014 * 145.62559 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0274 -1.2381 -0.3620 9 7 1.4055 -2.3422 0.4572 10 6 1.7211 -3.6352 -0.1550 11 6 0.7744 -3.8938 -1.2987 12 6 0.9266 -3.5494 -2.5987 13 7 -0.0915 -3.9304 -3.3430 14 7 -1.0585 -4.5407 -2.7774 15 16 -0.7517 -4.6883 -1.2497 16 6 0.4430 -2.2689 1.5591 17 6 1.1612 -2.5392 2.8827 18 9 2.1627 -1.5812 3.0739 19 9 0.2419 -2.4697 3.9349 20 9 1.7359 -3.8143 2.8495 21 1 -0.4850 0.8400 0.0004 22 1 2.7453 -3.6206 -0.5274 23 1 1.6161 -4.4247 0.5891 24 1 1.7880 -3.0236 -2.9834 25 1 -0.0048 -1.2754 1.5850 26 1 -0.3374 -3.0153 1.4102 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000685981092.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:58 Heat of formation + Delta-G solvation = -83.885007 kcal Electronic energy + Delta-G solvation = -18778.383985 eV Core-core repulsion = 15183.732376 eV Total energy + Delta-G solvation = -3594.651608 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.035 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.72538 -48.28899 -48.19110 -41.52256 -38.00723 -34.21371 -32.74921 -30.28573 -28.76436 -26.49422 -24.85019 -23.25275 -21.68583 -19.94528 -19.39036 -19.18420 -18.86981 -17.70128 -16.82278 -16.49602 -16.15175 -15.64674 -15.58413 -15.08918 -15.00771 -14.84585 -14.70076 -14.44502 -14.40532 -13.73073 -13.43173 -13.11887 -12.91112 -12.80249 -12.59865 -12.19740 -12.12359 -11.88626 -10.97175 -10.73220 -10.66060 -10.43047 -9.00626 -8.07649 -5.61768 -0.55138 0.38947 0.93708 1.45061 1.46743 1.53004 1.60220 2.15441 2.44094 3.03478 3.20257 3.38157 3.47816 3.51016 3.88180 4.03805 4.22397 4.52790 4.77175 4.87322 4.94084 5.19381 5.62698 6.20965 6.85306 6.94097 7.52159 7.99693 8.94454 Molecular weight = 267.03amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.009873 C = 0.007002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.310879 B = 2835.394155 C = 3997.709581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.020 4.020 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.268 4.268 8 H 0.080 0.920 9 N -0.562 5.562 10 C 0.207 3.793 11 C -0.234 4.234 12 C -0.013 4.013 13 N -0.273 5.273 14 N -0.346 5.346 15 S 0.436 5.564 16 C 0.104 3.896 17 C 0.422 3.578 18 F -0.193 7.193 19 F -0.200 7.200 20 F -0.191 7.191 21 H 0.258 0.742 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.205 0.795 25 H 0.115 0.885 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.991 -7.343 3.725 8.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.219 4.219 3 Si 0.780 3.220 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.398 4.398 8 H 0.098 0.902 9 N -0.279 5.279 10 C 0.079 3.921 11 C -0.376 4.376 12 C -0.177 4.177 13 N -0.138 5.138 14 N -0.325 5.325 15 S 0.569 5.431 16 C -0.027 4.027 17 C 0.365 3.635 18 F -0.174 7.174 19 F -0.181 7.181 20 F -0.173 7.173 21 H 0.068 0.932 22 H 0.114 0.886 23 H 0.109 0.891 24 H 0.221 0.779 25 H 0.132 0.868 26 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.206 -8.007 3.228 8.635 hybrid contribution 1.629 1.946 0.112 2.540 sum 1.835 -6.061 3.340 7.159 Atomic orbital electron populations 1.69987 1.06685 1.26967 1.51273 1.25733 0.95556 1.01548 0.99077 0.85524 0.78799 0.80036 0.77641 1.21052 1.21962 1.19388 1.19376 0.95391 0.85523 1.39531 0.90209 1.44017 1.48446 1.03872 1.31547 1.19964 0.95234 0.87857 0.89064 1.28724 1.04378 1.03347 1.01115 1.23753 1.00108 1.03394 0.90489 1.71172 0.98858 1.10984 1.32809 1.78527 1.23352 1.23205 1.07371 1.80855 1.09090 1.41327 1.11789 1.22196 0.91667 1.07004 0.81826 1.22743 0.78189 0.73296 0.89273 1.93113 1.63571 1.64748 1.96008 1.93093 1.66879 1.96161 1.62003 1.93066 1.86117 1.41294 1.96825 0.93245 0.88617 0.89070 0.77864 0.86802 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.39 11.36 21.65 0.25 -46.14 15 2 C -0.02 -0.96 4.92 84.86 0.42 -0.54 15 3 Si 0.95 40.40 29.61 68.60 2.03 42.44 15 4 H -0.28 -12.03 7.11 99.48 0.71 -11.33 15 5 H -0.29 -12.73 7.11 99.48 0.71 -12.03 15 6 H -0.27 -11.17 7.11 99.48 0.71 -10.47 15 7 C -0.27 -12.21 9.23 84.03 0.78 -11.43 15 8 H 0.08 3.55 7.93 -2.91 -0.02 3.52 15 9 N -0.56 -22.51 2.35 -706.36 -1.66 -24.17 15 10 C 0.21 6.65 6.04 85.63 0.52 7.17 15 11 C -0.23 -7.80 6.27 25.02 0.16 -7.64 15 12 C -0.01 -0.45 11.54 84.04 0.97 0.52 15 13 N -0.27 -10.61 11.68 -61.12 -0.71 -11.33 15 14 N -0.35 -12.91 12.54 37.02 0.46 -12.44 15 15 S 0.44 13.49 23.40 -56.49 -1.32 12.17 15 16 C 0.10 4.04 5.28 86.38 0.46 4.50 15 17 C 0.42 15.37 3.29 71.98 0.24 15.61 15 18 F -0.19 -7.84 16.99 44.97 0.76 -7.08 15 19 F -0.20 -6.94 17.32 44.97 0.78 -6.17 15 20 F -0.19 -6.34 15.82 44.97 0.71 -5.63 15 21 H 0.26 13.05 8.31 -92.71 -0.77 12.28 15 22 H 0.10 2.84 8.04 -2.39 -0.02 2.82 15 23 H 0.09 2.53 6.86 -2.39 -0.02 2.51 15 24 H 0.20 6.51 8.06 -2.91 -0.02 6.49 15 25 H 0.11 5.21 5.35 -2.38 -0.01 5.19 15 26 H 0.09 3.04 8.11 -2.38 -0.02 3.02 15 Total: -1.00 -54.23 261.59 6.07 -48.17 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.24 Total: 2.02 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 3.53 Total: 8.17 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -1.66 Total: -94.08 kcal Atomic # 9 Polarization: -21.13 SS G_CDS: 2.25 Total: -18.87 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.44 kcal Atomic # 16 Polarization: 13.49 SS G_CDS: -1.32 Total: 12.17 kcal Total: -54.23 6.07 -48.17 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000685981092.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.720 kcal (2) G-P(sol) polarization free energy of solvation -54.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds