Wall clock time and date at job start Mon Mar 30 2020 04:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42898 * 109.47644 * 59.99870 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 C 1.50700 * 109.47117 * 174.99511 * 12 9 7 14 14 N 1.30972 * 126.42751 * 90.00285 * 13 12 9 15 15 C 1.35244 * 105.57942 * 179.97438 * 14 13 12 16 16 C 1.48315 * 126.42514 * 180.02562 * 15 14 13 17 17 C 1.38858 * 122.85833 * 359.70840 * 16 15 14 18 18 N 1.29784 * 116.83153 * 179.73780 * 17 16 15 19 19 S 1.69530 * 107.50416 * 0.49219 * 18 17 16 20 20 C 1.36330 * 122.86492 * 179.97438 * 16 15 14 21 21 N 1.30830 * 107.15530 * 359.97438 * 15 14 13 22 22 O 1.21293 * 110.08473 * 359.70183 * 21 15 14 23 23 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 24 24 H 0.96701 * 113.99881 * 59.99544 * 11 9 7 25 25 H 1.08999 * 109.47029 * 294.99679 * 12 9 7 26 26 H 1.09005 * 109.47152 * 54.99424 * 12 9 7 27 27 H 1.08000 * 121.58515 * 359.97438 * 17 16 15 28 28 H 1.08001 * 127.25890 * 0.02654 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 8 0.4299 -2.5741 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 6 1.4958 -4.9637 0.1213 14 7 1.0399 -5.6948 -0.8652 15 6 0.4434 -6.7596 -0.2827 16 6 -0.2290 -7.8828 -0.9799 17 6 -0.3265 -7.9608 -2.3628 18 7 -0.9355 -8.9984 -2.8496 19 16 -1.4435 -9.9512 -1.5425 20 6 -0.8086 -8.9239 -0.3175 21 7 0.5716 -6.6138 1.0111 22 8 1.1778 -5.5925 1.2572 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9223 -2.5282 -1.9998 25 1 2.8121 -3.6556 -0.9324 26 1 2.9288 -3.5556 0.8409 27 1 0.0882 -7.1964 -3.0032 28 1 -0.8591 -9.0721 0.7511 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687173300.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:39 Heat of formation + Delta-G solvation = 26.015737 kcal Electronic energy + Delta-G solvation = -17215.587890 eV Core-core repulsion = 14167.558676 eV Total energy + Delta-G solvation = -3048.029214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -46.60206 -40.15329 -38.50560 -36.75330 -34.64165 -34.23774 -32.43120 -30.91962 -27.39373 -26.90323 -25.22706 -23.97087 -22.73572 -21.06869 -19.71373 -19.45528 -19.08958 -18.02888 -17.16401 -16.93615 -16.24027 -15.63310 -15.49318 -15.31894 -14.92409 -14.69905 -14.51541 -14.14636 -13.53503 -13.11903 -12.81848 -12.63859 -12.51653 -12.25947 -12.20973 -11.90130 -11.80860 -11.77881 -11.18967 -10.77494 -10.60334 -10.14280 -9.71980 -8.58384 -6.44833 -0.73740 0.01907 0.21106 0.60659 0.69806 1.60931 1.67837 1.71914 1.74613 1.86164 2.47462 2.62173 2.78979 3.20661 3.50438 3.82721 3.94823 4.05406 4.23264 4.30969 4.36784 4.54750 4.61339 4.78002 4.91656 5.31468 5.34868 5.80496 6.16972 6.56673 6.99254 7.17091 7.51936 8.79690 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.046759 B = 0.003868 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.671104 B = 7237.590269 C = 7509.296341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.116 2.884 4 H -0.294 1.294 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.651 4.651 8 H 0.070 0.930 9 C 0.218 3.782 10 H 0.022 0.978 11 O -0.590 6.590 12 C -0.040 4.040 13 C 0.217 3.783 14 N -0.488 5.488 15 C 0.230 3.770 16 C -0.122 4.122 17 C 0.129 3.871 18 N -0.487 5.487 19 S 0.352 5.648 20 C -0.162 4.162 21 N -0.396 5.396 22 O 0.064 5.936 23 H 0.266 0.734 24 H 0.369 0.631 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.196 0.804 28 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -16.945 -0.982 17.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.938 3.062 4 H -0.220 1.220 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.689 4.689 8 H 0.088 0.912 9 C 0.159 3.841 10 H 0.040 0.960 11 O -0.397 6.397 12 C -0.079 4.079 13 C -0.003 4.003 14 N -0.221 5.221 15 C -0.043 4.043 16 C -0.141 4.141 17 C -0.070 4.070 18 N -0.306 5.306 19 S 0.504 5.496 20 C -0.313 4.313 21 N -0.108 5.108 22 O 0.008 5.992 23 H 0.077 0.923 24 H 0.216 0.784 25 H 0.141 0.859 26 H 0.141 0.859 27 H 0.213 0.787 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.309 -17.696 -1.535 17.765 hybrid contribution 1.280 0.161 0.677 1.457 sum 1.590 -17.535 -0.858 17.627 Atomic orbital electron populations 1.70791 1.08363 1.31231 1.45585 1.27292 0.96356 1.06660 0.91707 0.82952 0.74025 0.71051 0.78169 1.22014 1.19198 1.19142 1.22733 0.95375 0.92486 1.58277 0.91152 1.19410 0.88194 0.91384 0.85065 0.95978 1.86472 1.39926 1.96466 1.16790 1.21186 0.97265 0.82369 1.07057 1.29238 0.94610 0.97285 0.79147 1.72007 1.15755 1.04138 1.30186 1.23443 0.99089 0.95038 0.86701 1.17765 1.08320 0.95187 0.92873 1.22783 0.95194 0.96293 0.92718 1.76607 1.20251 1.09470 1.24266 1.83834 1.50764 1.25536 0.89468 1.27181 0.98614 0.97397 1.08121 1.74788 1.15779 1.03077 1.17176 1.85235 1.52710 1.25741 1.35495 0.92319 0.78411 0.85916 0.85891 0.78720 0.77342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.21 13.53 21.45 0.29 -54.92 15 2 C -0.02 -0.97 5.40 84.66 0.46 -0.51 15 3 Si 1.12 46.56 29.90 68.60 2.05 48.62 15 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 15 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 6 H -0.27 -10.18 7.11 99.48 0.71 -9.47 15 7 C -0.65 -32.49 8.76 25.60 0.22 -32.27 15 8 H 0.07 3.26 7.74 -2.91 -0.02 3.23 15 9 C 0.22 10.02 2.41 29.85 0.07 10.10 15 10 H 0.02 1.16 8.01 -2.39 -0.02 1.14 15 11 O -0.59 -28.26 11.77 -148.98 -1.75 -30.01 15 12 C -0.04 -1.37 5.46 29.85 0.16 -1.21 15 13 C 0.22 7.69 7.52 88.36 0.66 8.35 15 14 N -0.49 -17.32 11.49 -302.40 -3.48 -20.79 15 15 C 0.23 7.64 7.89 137.24 1.08 8.73 15 16 C -0.12 -3.27 5.83 -20.89 -0.12 -3.40 15 17 C 0.13 3.28 11.05 85.14 0.94 4.22 15 18 N -0.49 -11.75 12.05 -61.59 -0.74 -12.50 15 19 S 0.35 6.19 23.70 -56.49 -1.34 4.85 15 20 C -0.16 -3.31 11.16 67.37 0.75 -2.56 15 21 N -0.40 -13.63 12.09 -59.02 -0.71 -14.34 15 22 O 0.06 2.27 11.29 74.68 0.84 3.11 15 23 H 0.27 16.51 6.47 -92.71 -0.60 15.91 15 24 H 0.37 15.54 9.04 -74.06 -0.67 14.87 15 25 H 0.12 3.79 8.14 -2.39 -0.02 3.77 15 26 H 0.12 3.70 8.14 -2.38 -0.02 3.68 15 27 H 0.20 4.81 8.06 -2.91 -0.02 4.78 15 28 H 0.21 3.41 8.06 -2.91 -0.02 3.39 15 Total: -1.00 -64.91 276.30 0.12 -64.79 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: 0.72 Total: 19.74 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: 4.23 Total: -8.55 kcal Atomic # 7 Polarization: -97.91 SS G_CDS: -4.64 Total: -102.55 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.91 Total: -26.90 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.05 Total: 48.62 kcal Atomic # 16 Polarization: 6.19 SS G_CDS: -1.34 Total: 4.85 kcal Total: -64.91 0.12 -64.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173300.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.809 kcal (2) G-P(sol) polarization free energy of solvation -64.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds