Wall clock time and date at job start Mon Mar 30 2020 04:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 11 11 O 1.42896 * 109.46977 * 299.99762 * 9 7 2 12 12 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 13 13 C 1.50694 * 109.47412 * 184.99886 * 12 9 7 14 14 N 1.30976 * 126.42862 * 89.99629 * 13 12 9 15 15 C 1.35251 * 105.57642 * 180.02562 * 14 13 12 16 16 C 1.48314 * 126.41966 * 180.02562 * 15 14 13 17 17 C 1.38859 * 122.85979 * 359.70993 * 16 15 14 18 18 N 1.29786 * 116.83039 * 179.74393 * 17 16 15 19 19 S 1.69531 * 107.50535 * 0.48215 * 18 17 16 20 20 C 1.36330 * 122.86132 * 179.97438 * 16 15 14 21 21 N 1.30827 * 107.15643 * 0.02562 * 15 14 13 22 22 O 1.21291 * 110.08686 * 359.70505 * 21 15 14 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 0.96699 * 114.00348 * 300.00156 * 11 9 7 25 25 H 1.09004 * 109.46938 * 305.00367 * 12 9 7 26 26 H 1.09005 * 109.47154 * 64.99569 * 12 9 7 27 27 H 1.07999 * 121.58640 * 359.97438 * 17 16 15 28 28 H 1.07998 * 127.26010 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6248 -2.5571 -0.8896 11 8 0.4292 -2.5746 1.1670 12 6 2.2454 -3.6620 0.0018 13 6 1.4962 -4.9637 -0.1220 14 7 1.1801 -5.5763 -1.2357 15 6 0.5190 -6.6948 -0.8599 16 6 -0.0473 -7.7276 -1.7612 17 6 0.0397 -7.6498 -3.1449 18 7 -0.4924 -8.6215 -3.8208 19 16 -1.1623 -9.7104 -2.7074 20 6 -0.7023 -8.8315 -1.3019 21 7 0.4728 -6.6949 0.4475 22 8 1.0334 -5.7120 0.8843 23 1 -0.4850 -0.8401 -0.0004 24 1 0.9209 -2.5290 1.9984 25 1 2.9302 -3.5555 -0.8395 26 1 2.8109 -3.6555 0.9336 27 1 0.5303 -6.8220 -3.6351 28 1 -0.8928 -9.0978 -0.2728 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687173302.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:41 Heat of formation + Delta-G solvation = 25.133669 kcal Electronic energy + Delta-G solvation = -17190.404115 eV Core-core repulsion = 14142.336651 eV Total energy + Delta-G solvation = -3048.067463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 267.046 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.60796 -40.16567 -38.52641 -36.80946 -34.65262 -34.26461 -32.41231 -30.95010 -27.38791 -26.94133 -25.25619 -23.94854 -22.74497 -21.11632 -19.73047 -19.47846 -19.09822 -18.04327 -17.17445 -16.96948 -16.03931 -15.65056 -15.53406 -15.44321 -15.05882 -14.69674 -14.55180 -13.97539 -13.64743 -13.14489 -12.82579 -12.65547 -12.52289 -12.28648 -12.23397 -11.90187 -11.85144 -11.79143 -11.21800 -10.78154 -10.60978 -10.16733 -9.72808 -8.59329 -6.45830 -0.74452 0.01467 0.20219 0.59453 0.66388 1.60651 1.67649 1.69571 1.75216 1.86032 2.45454 2.61731 2.76886 3.19720 3.49084 3.79524 3.97519 4.05259 4.22177 4.26208 4.32938 4.53139 4.61343 4.78319 4.88346 5.30003 5.34532 5.79194 6.16135 6.55693 6.98734 7.16783 7.51161 8.78721 Molecular weight = 267.05amu Principal moments of inertia in cm(-1) A = 0.041504 B = 0.003872 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.470382 B = 7229.879370 C = 7500.237891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.018 4.018 3 Si 1.117 2.883 4 H -0.294 1.294 5 H -0.264 1.264 6 H -0.269 1.269 7 C -0.651 4.651 8 H 0.071 0.929 9 C 0.220 3.780 10 H 0.020 0.980 11 O -0.595 6.595 12 C -0.040 4.040 13 C 0.220 3.780 14 N -0.504 5.504 15 C 0.229 3.771 16 C -0.122 4.122 17 C 0.127 3.873 18 N -0.487 5.487 19 S 0.354 5.646 20 C -0.161 4.161 21 N -0.394 5.394 22 O 0.075 5.925 23 H 0.266 0.734 24 H 0.373 0.627 25 H 0.123 0.877 26 H 0.125 0.875 27 H 0.195 0.805 28 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.507 -16.813 -1.317 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.220 4.220 3 Si 0.938 3.062 4 H -0.220 1.220 5 H -0.189 1.189 6 H -0.194 1.194 7 C -0.689 4.689 8 H 0.089 0.911 9 C 0.161 3.839 10 H 0.037 0.963 11 O -0.402 6.402 12 C -0.079 4.079 13 C 0.001 3.999 14 N -0.238 5.238 15 C -0.044 4.044 16 C -0.142 4.142 17 C -0.071 4.071 18 N -0.306 5.306 19 S 0.506 5.494 20 C -0.312 4.312 21 N -0.105 5.105 22 O 0.019 5.981 23 H 0.077 0.923 24 H 0.220 0.780 25 H 0.141 0.859 26 H 0.143 0.857 27 H 0.212 0.788 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 0.645 -17.429 -3.201 17.732 hybrid contribution 1.134 0.037 1.505 1.885 sum 1.779 -17.392 -1.696 17.565 Atomic orbital electron populations 1.70793 1.08367 1.31213 1.45547 1.27310 0.96356 1.06693 0.91670 0.82950 0.74029 0.71009 0.78194 1.21972 1.18858 1.19428 1.22724 0.95392 0.92454 1.58318 0.91113 1.19395 0.88130 0.91447 0.84908 0.96264 1.86475 1.40221 1.96470 1.17018 1.21198 0.97207 0.82214 1.07299 1.29209 0.93723 0.96388 0.80575 1.72014 1.17937 1.06385 1.27495 1.23414 0.98452 0.94000 0.88518 1.17763 1.08728 0.95756 0.91978 1.22777 0.96364 0.97906 0.90100 1.76602 1.19177 1.07938 1.26873 1.83832 1.51000 1.26037 0.88524 1.27186 0.98371 0.97099 1.08551 1.74781 1.17399 1.06036 1.12285 1.85238 1.51766 1.24721 1.36398 0.92346 0.77991 0.85915 0.85717 0.78830 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.31 13.53 21.45 0.29 -55.02 15 2 C -0.02 -0.98 5.40 84.65 0.46 -0.52 15 3 Si 1.12 46.62 29.90 68.60 2.05 48.67 15 4 H -0.29 -12.75 7.11 99.48 0.71 -12.05 15 5 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 7 C -0.65 -32.63 8.76 25.60 0.22 -32.40 15 8 H 0.07 3.29 7.74 -2.91 -0.02 3.26 15 9 C 0.22 10.15 2.42 29.85 0.07 10.23 15 10 H 0.02 1.04 8.01 -2.39 -0.02 1.03 15 11 O -0.60 -27.96 11.77 -148.98 -1.75 -29.72 15 12 C -0.04 -1.39 5.46 29.85 0.16 -1.23 15 13 C 0.22 7.87 7.52 88.35 0.66 8.53 15 14 N -0.50 -18.34 11.49 -302.40 -3.48 -21.81 15 15 C 0.23 7.67 7.89 137.23 1.08 8.76 15 16 C -0.12 -3.32 5.83 -20.89 -0.12 -3.44 15 17 C 0.13 3.27 11.05 85.14 0.94 4.21 15 18 N -0.49 -11.82 12.05 -61.59 -0.74 -12.56 15 19 S 0.35 6.23 23.70 -56.49 -1.34 4.89 15 20 C -0.16 -3.30 11.17 67.37 0.75 -2.54 15 21 N -0.39 -13.57 12.09 -59.01 -0.71 -14.28 15 22 O 0.08 2.66 11.29 74.64 0.84 3.50 15 23 H 0.27 16.54 6.47 -92.70 -0.60 15.94 15 24 H 0.37 14.80 9.04 -74.06 -0.67 14.13 15 25 H 0.12 3.97 8.14 -2.38 -0.02 3.96 15 26 H 0.12 3.59 8.14 -2.38 -0.02 3.57 15 27 H 0.20 4.86 8.06 -2.91 -0.02 4.83 15 28 H 0.21 3.41 8.06 -2.91 -0.02 3.39 15 Total: -1.00 -65.77 276.30 0.12 -65.65 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.72 Total: 19.09 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.23 Total: -8.41 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -4.64 Total: -103.68 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.91 Total: -26.22 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.05 Total: 48.67 kcal Atomic # 16 Polarization: 6.23 SS G_CDS: -1.34 Total: 4.89 kcal Total: -65.77 0.12 -65.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687173302.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.782 kcal (2) G-P(sol) polarization free energy of solvation -65.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds