Wall clock time and date at job start Mon Mar 30 2020 05:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48498 * 109.47214 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47248 * 119.99815 * 3 2 1 7 7 C 1.38811 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00170 * 191.10460 * 7 2 1 9 9 N 1.36934 * 120.00000 * 10.82371 * 7 2 1 10 10 C 1.46956 * 120.59669 * 32.01747 * 9 7 2 11 11 C 1.53808 * 108.40080 * 124.75730 * 10 9 7 12 12 N 1.46963 * 108.58122 * 49.64141 * 11 10 9 13 13 C 1.34772 * 120.59888 * 124.66837 * 12 11 10 14 14 O 1.21611 * 120.00060 * 186.37008 * 13 12 11 15 15 C 1.47341 * 119.99756 * 6.37347 * 13 12 11 16 16 C 1.39241 * 123.08523 * 223.90908 * 15 13 12 17 17 N 1.29513 * 116.93458 * 179.97438 * 16 15 13 18 18 S 1.69487 * 107.84859 * 0.02562 * 17 16 15 19 19 C 1.37898 * 123.08782 * 43.62120 * 15 13 12 20 20 C 1.46967 * 118.80599 * 304.64619 * 12 11 10 21 21 C 1.46967 * 120.59318 * 212.29584 * 9 7 2 22 22 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.61138 * 244.54076 * 10 9 7 24 24 H 1.09008 * 109.60770 * 5.05236 * 10 9 7 25 25 H 1.09001 * 109.74309 * 289.84784 * 11 10 9 26 26 H 1.09005 * 109.67567 * 169.39136 * 11 10 9 27 27 H 1.07996 * 121.53397 * 359.97438 * 16 15 13 28 28 H 1.08007 * 127.31850 * 359.97438 * 19 15 13 29 29 H 1.08994 * 109.61321 * 295.47664 * 20 12 11 30 30 H 1.09003 * 109.60571 * 174.97347 * 20 12 11 31 31 H 1.09004 * 109.61405 * 354.95117 * 21 9 7 32 32 H 1.09001 * 109.61056 * 115.45655 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0751 -1.2111 0.1796 9 7 1.3437 -2.3774 -0.2238 10 6 0.1682 -2.4149 -1.1048 11 6 0.4139 -3.4692 -2.1975 12 7 0.8577 -4.7144 -1.5554 13 6 0.2018 -5.8711 -1.7751 14 8 0.5047 -6.8699 -1.1509 15 6 -0.8822 -5.9255 -2.7716 16 6 -2.0934 -6.5731 -2.5425 17 7 -2.9634 -6.5465 -3.5016 18 16 -2.2886 -5.6780 -4.7912 19 6 -0.7926 -5.3348 -4.0144 20 6 2.0300 -4.6758 -0.6699 21 6 1.7876 -3.6226 0.4184 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7150 -2.6839 -0.5253 24 1 0.0237 -1.4369 -1.5639 25 1 1.1843 -3.1163 -2.8831 26 1 -0.5098 -3.6501 -2.7473 27 1 -2.2980 -7.0745 -1.6082 28 1 0.0404 -4.7765 -4.4155 29 1 2.9155 -4.4089 -1.2466 30 1 2.1720 -5.6530 -0.2082 31 1 2.7129 -3.4424 0.9656 32 1 1.0171 -3.9755 1.1039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687183863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:18 Heat of formation + Delta-G solvation = 43.295274 kcal Electronic energy + Delta-G solvation = -18269.179560 eV Core-core repulsion = 15357.732738 eV Total energy + Delta-G solvation = -2911.446823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20009 -38.08425 -36.72998 -33.99992 -32.09469 -30.87282 -30.07557 -27.16265 -25.58932 -23.79752 -23.01670 -21.75460 -20.08174 -19.20057 -17.73902 -17.21834 -16.11325 -15.79967 -15.01837 -14.84285 -14.73393 -13.94783 -13.70969 -13.59658 -13.39123 -13.30887 -13.19816 -12.39554 -11.79758 -11.55892 -11.35359 -10.90321 -10.87885 -10.79967 -10.57636 -10.28730 -10.20086 -9.92845 -9.82255 -9.50160 -8.86377 -8.64315 -8.34629 -6.72222 -5.90595 -3.41200 0.41467 1.28846 1.66283 1.98913 3.04872 3.30956 3.36749 3.37002 3.44469 4.38825 4.53967 4.76565 4.98262 5.22712 5.28263 5.38702 5.63313 5.71182 5.78528 5.86611 6.01823 6.10987 6.27422 6.35207 6.40874 6.73724 6.85359 7.14195 7.41531 7.66022 7.77115 8.33238 8.38097 9.07552 9.67838 10.26643 11.16809 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.005420 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.343655 B = 5164.917239 C = 5827.701026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.160 3.840 11 C 0.073 3.927 12 N -0.586 5.586 13 C 0.578 3.422 14 O -0.549 6.549 15 C -0.199 4.199 16 C 0.135 3.865 17 N -0.466 5.466 18 S 0.279 5.721 19 C -0.170 4.170 20 C 0.096 3.904 21 C 0.131 3.869 22 H 0.257 0.743 23 H 0.024 0.976 24 H 0.102 0.898 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.191 0.809 28 H 0.192 0.808 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 -8.428 -8.872 12.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.737 3.263 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.314 5.314 10 C 0.033 3.967 11 C -0.051 4.051 12 N -0.317 5.317 13 C 0.362 3.638 14 O -0.429 6.429 15 C -0.221 4.221 16 C -0.064 4.064 17 N -0.284 5.284 18 S 0.431 5.569 19 C -0.319 4.319 20 C -0.027 4.027 21 C 0.004 3.996 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.120 0.880 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.207 0.793 28 H 0.209 0.791 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -3.277 -8.918 -9.944 13.754 hybrid contribution 1.777 1.084 1.322 2.466 sum -1.499 -7.834 -8.623 11.746 Atomic orbital electron populations 1.69935 1.05334 1.25900 1.53676 1.25210 0.95423 0.98580 1.00041 0.86304 0.78836 0.82962 0.78222 1.20882 1.21540 1.20750 1.19153 0.90972 0.83717 1.44919 0.91602 1.43956 1.32789 1.03890 1.50746 1.21270 0.88929 0.97007 0.89465 1.23003 0.99007 0.85130 0.97980 1.47948 1.29755 1.07736 1.46259 1.17431 0.81182 0.83421 0.81717 1.90760 1.67257 1.34900 1.49948 1.20616 0.98509 1.06195 0.96732 1.22742 0.88405 0.95917 0.99296 1.76534 1.27331 1.21067 1.03516 1.84016 1.03376 1.46752 1.22732 1.27472 1.05118 1.01274 0.98037 1.22277 0.86304 1.01154 0.93005 1.21322 0.98700 0.87100 0.92519 0.93326 0.95795 0.88018 0.91679 0.90853 0.79258 0.79072 0.91675 0.89771 0.91373 0.95719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.96 11.07 55.49 0.61 -24.35 16 2 C 0.01 0.17 5.04 -17.43 -0.09 0.08 16 3 Si 0.91 20.66 29.57 -169.99 -5.03 15.63 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.68 9.57 -15.06 -0.14 -6.83 16 8 H 0.07 1.67 7.85 -52.48 -0.41 1.26 16 9 N -0.59 -14.00 2.95 -171.77 -0.51 -14.51 16 10 C 0.16 3.54 5.48 -3.37 -0.02 3.52 16 11 C 0.07 1.25 5.60 -3.37 -0.02 1.23 16 12 N -0.59 -10.21 2.95 -173.52 -0.51 -10.72 16 13 C 0.58 9.90 7.40 -12.56 -0.09 9.81 16 14 O -0.55 -10.80 16.46 5.27 0.09 -10.71 16 15 C -0.20 -2.83 4.93 -105.95 -0.52 -3.36 16 16 C 0.13 1.83 11.07 -18.16 -0.20 1.63 16 17 N -0.47 -6.26 12.02 29.37 0.35 -5.90 16 18 S 0.28 3.03 23.69 -107.50 -2.55 0.48 16 19 C -0.17 -1.96 8.85 30.61 0.27 -1.69 16 20 C 0.10 1.70 6.60 -3.60 -0.02 1.67 16 21 C 0.13 2.66 6.67 -3.60 -0.02 2.63 16 22 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.10 2.48 6.07 -51.92 -0.32 2.17 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.09 4.90 -51.93 -0.25 0.84 16 27 H 0.19 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.19 1.82 7.46 -52.48 -0.39 1.43 16 29 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.44 6.99 -51.93 -0.36 1.08 16 31 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -30.08 281.39 -7.56 -37.64 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -3.40 Total: -0.49 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -0.86 Total: 8.69 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.05 Total: -55.48 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -2.55 Total: 0.48 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.08 -7.56 -37.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.934 kcal (2) G-P(sol) polarization free energy of solvation -30.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds