Wall clock time and date at job start Mon Mar 30 2020 05:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86800 * 120.00366 * 2 1 4 4 H 1.48498 * 109.47214 * 240.00025 * 3 2 1 5 5 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47248 * 119.99815 * 3 2 1 7 7 C 1.38811 * 119.99734 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00170 * 191.10460 * 7 2 1 9 9 N 1.36934 * 120.00000 * 10.82371 * 7 2 1 10 10 C 1.46956 * 120.59669 * 32.01747 * 9 7 2 11 11 C 1.53808 * 108.40080 * 124.75730 * 10 9 7 12 12 N 1.46963 * 108.58122 * 49.64141 * 11 10 9 13 13 C 1.34772 * 120.59888 * 124.66837 * 12 11 10 14 14 O 1.21611 * 120.00060 * 186.37008 * 13 12 11 15 15 C 1.47341 * 119.99756 * 6.37347 * 13 12 11 16 16 C 1.39241 * 123.08523 * 223.90908 * 15 13 12 17 17 N 1.29513 * 116.93458 * 179.97438 * 16 15 13 18 18 S 1.69487 * 107.84859 * 0.02562 * 17 16 15 19 19 C 1.37898 * 123.08782 * 43.62120 * 15 13 12 20 20 C 1.46967 * 118.80599 * 304.64619 * 12 11 10 21 21 C 1.46967 * 120.59318 * 212.29584 * 9 7 2 22 22 H 0.96999 * 119.99755 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.61138 * 244.54076 * 10 9 7 24 24 H 1.09008 * 109.60770 * 5.05236 * 10 9 7 25 25 H 1.09001 * 109.74309 * 289.84784 * 11 10 9 26 26 H 1.09005 * 109.67567 * 169.39136 * 11 10 9 27 27 H 1.07996 * 121.53397 * 359.97438 * 16 15 13 28 28 H 1.08007 * 127.31850 * 359.97438 * 19 15 13 29 29 H 1.08994 * 109.61321 * 295.47664 * 20 12 11 30 30 H 1.09003 * 109.60571 * 174.97347 * 20 12 11 31 31 H 1.09004 * 109.61405 * 354.95117 * 21 9 7 32 32 H 1.09001 * 109.61056 * 115.45655 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0751 -1.2111 0.1796 9 7 1.3437 -2.3774 -0.2238 10 6 0.1682 -2.4149 -1.1048 11 6 0.4139 -3.4692 -2.1975 12 7 0.8577 -4.7144 -1.5554 13 6 0.2018 -5.8711 -1.7751 14 8 0.5047 -6.8699 -1.1509 15 6 -0.8822 -5.9255 -2.7716 16 6 -2.0934 -6.5731 -2.5425 17 7 -2.9634 -6.5465 -3.5016 18 16 -2.2886 -5.6780 -4.7912 19 6 -0.7926 -5.3348 -4.0144 20 6 2.0300 -4.6758 -0.6699 21 6 1.7876 -3.6226 0.4184 22 1 -0.4850 0.8401 -0.0004 23 1 -0.7150 -2.6839 -0.5253 24 1 0.0237 -1.4369 -1.5639 25 1 1.1843 -3.1163 -2.8831 26 1 -0.5098 -3.6501 -2.7473 27 1 -2.2980 -7.0745 -1.6082 28 1 0.0404 -4.7765 -4.4155 29 1 2.9155 -4.4089 -1.2466 30 1 2.1720 -5.6530 -0.2082 31 1 2.7129 -3.4424 0.9656 32 1 1.0171 -3.9755 1.1039 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687183863.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:17 Heat of formation + Delta-G solvation = 23.941719 kcal Electronic energy + Delta-G solvation = -18270.018794 eV Core-core repulsion = 15357.732738 eV Total energy + Delta-G solvation = -2912.286056 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.078 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.48099 -39.27983 -38.26998 -35.66885 -33.57471 -32.40235 -31.56695 -28.80342 -26.78380 -25.40934 -24.57775 -23.15975 -21.45194 -20.48855 -19.12055 -18.51075 -17.67961 -17.18836 -16.67738 -16.24599 -15.97721 -15.46643 -15.22282 -14.99578 -14.98422 -14.61992 -14.44098 -13.85925 -13.36260 -13.12807 -12.66723 -12.56317 -12.49284 -12.25240 -12.05751 -11.98271 -11.84812 -11.67457 -11.02161 -10.71737 -10.56487 -9.93252 -9.73559 -8.60954 -7.87433 -5.41800 -0.55906 0.35656 0.69718 0.89664 1.51602 1.51740 1.58976 1.75181 2.13766 2.52035 3.28877 3.52275 3.59295 3.62405 4.00070 4.21818 4.24488 4.38022 4.44302 4.56260 4.61409 4.66612 4.75827 4.82081 5.07236 5.22657 5.38423 5.53508 5.61847 5.65055 6.37870 6.39749 7.03200 7.12724 7.78263 8.33452 9.17097 Molecular weight = 267.08amu Principal moments of inertia in cm(-1) A = 0.027543 B = 0.005420 C = 0.004803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.343655 B = 5164.917239 C = 5827.701026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.043 4.043 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.279 1.279 7 C -0.266 4.266 8 H 0.070 0.930 9 N -0.608 5.608 10 C 0.165 3.835 11 C 0.092 3.908 12 N -0.591 5.591 13 C 0.582 3.418 14 O -0.579 6.579 15 C -0.228 4.228 16 C 0.130 3.870 17 N -0.494 5.494 18 S 0.341 5.659 19 C -0.157 4.157 20 C 0.107 3.893 21 C 0.130 3.870 22 H 0.252 0.748 23 H -0.007 1.007 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.192 0.808 28 H 0.217 0.783 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.936 -8.478 -10.741 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.239 4.239 3 Si 0.798 3.202 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.205 1.205 7 C -0.396 4.396 8 H 0.088 0.912 9 N -0.331 5.331 10 C 0.038 3.962 11 C -0.032 4.032 12 N -0.322 5.322 13 C 0.369 3.631 14 O -0.460 6.460 15 C -0.249 4.249 16 C -0.067 4.067 17 N -0.314 5.314 18 S 0.494 5.506 19 C -0.307 4.307 20 C -0.017 4.017 21 C 0.004 3.996 22 H 0.061 0.939 23 H 0.011 0.989 24 H 0.096 0.904 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.209 0.791 28 H 0.234 0.766 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -2.589 -8.993 -11.823 15.079 hybrid contribution 1.520 1.071 1.867 2.635 sum -1.069 -7.922 -9.956 12.768 Atomic orbital electron populations 1.70103 1.06694 1.26132 1.55179 1.25923 0.96102 1.01547 1.00356 0.85304 0.77471 0.78974 0.78402 1.19869 1.22227 1.20487 1.19487 0.91400 0.84691 1.44005 0.91220 1.44220 1.32910 1.04352 1.51667 1.21089 0.87509 0.97435 0.90140 1.22755 1.00802 0.83444 0.96168 1.47984 1.29836 1.07985 1.46381 1.17748 0.81125 0.82643 0.81607 1.90738 1.68123 1.35825 1.51326 1.20411 0.98239 1.08939 0.97306 1.22744 0.88326 0.95969 0.99652 1.76408 1.28166 1.22321 1.04480 1.83862 1.01675 1.44598 1.20488 1.27840 1.06181 0.99676 0.96973 1.22103 0.87033 1.00167 0.92407 1.21393 0.98284 0.86679 0.93275 0.93900 0.98908 0.90427 0.89991 0.88395 0.79149 0.76620 0.90189 0.89262 0.90626 0.97553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.51 11.07 21.65 0.24 -52.27 16 2 C -0.04 -2.29 5.04 84.86 0.43 -1.86 16 3 Si 0.97 42.36 29.57 68.60 2.03 44.39 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 5 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.27 -13.71 9.57 84.03 0.80 -12.91 16 8 H 0.07 3.47 7.85 -2.91 -0.02 3.45 16 9 N -0.61 -28.84 2.95 -697.35 -2.06 -30.90 16 10 C 0.16 7.32 5.48 86.56 0.47 7.80 16 11 C 0.09 2.99 5.60 86.56 0.49 3.47 16 12 N -0.59 -19.74 2.95 -821.14 -2.42 -22.16 16 13 C 0.58 19.24 7.40 86.64 0.64 19.88 16 14 O -0.58 -22.42 16.46 -4.07 -0.07 -22.49 16 15 C -0.23 -6.07 4.93 -20.72 -0.10 -6.17 16 16 C 0.13 3.39 11.07 85.28 0.94 4.34 16 17 N -0.49 -12.42 12.02 -61.00 -0.73 -13.15 16 18 S 0.34 6.36 23.69 -56.49 -1.34 5.02 16 19 C -0.16 -3.14 8.85 67.74 0.60 -2.54 16 20 C 0.11 3.62 6.60 86.41 0.57 4.19 16 21 C 0.13 5.27 6.67 86.41 0.58 5.85 16 22 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 23 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.08 3.84 6.07 -2.38 -0.01 3.82 16 25 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.10 2.68 4.90 -2.38 -0.01 2.67 16 27 H 0.19 4.67 8.06 -2.91 -0.02 4.64 16 28 H 0.22 3.15 7.46 -2.91 -0.02 3.13 16 29 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.09 2.96 6.99 -2.39 -0.02 2.95 16 31 H 0.08 2.89 7.93 -2.39 -0.02 2.87 16 32 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 Total: -1.00 -64.76 281.39 2.22 -62.55 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: 1.14 Total: 6.98 kcal Atomic # 6 Polarization: 16.63 SS G_CDS: 5.42 Total: 22.05 kcal Atomic # 7 Polarization: -113.52 SS G_CDS: -4.97 Total: -118.49 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.07 Total: -22.49 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 6.36 SS G_CDS: -1.34 Total: 5.02 kcal Total: -64.76 2.22 -62.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687183863.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.489 kcal (2) G-P(sol) polarization free energy of solvation -64.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds