Wall clock time and date at job start Mon Mar 30 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99825 * 2 1 4 4 H 1.48503 * 109.46898 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47061 * 299.99631 * 3 2 1 6 6 H 1.48492 * 109.47166 * 59.99909 * 3 2 1 7 7 C 1.37881 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99995 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99873 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.40444 * 66.45879 * 9 7 2 11 11 O 1.42105 * 106.40480 * 293.53927 * 9 7 2 12 12 C 1.76203 * 107.21848 * 179.97438 * 9 7 2 13 13 C 1.38230 * 119.99753 * 90.00052 * 12 9 7 14 14 C 1.38242 * 119.99794 * 179.97438 * 13 12 9 15 15 C 1.38234 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00110 * 179.97438 * 15 14 13 17 17 C 1.53515 * 114.16962 * 239.99774 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.13408 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 C 1.38232 * 120.00045 * 0.25006 * 15 14 13 21 21 C 1.38235 * 119.99788 * 270.02139 * 12 9 7 22 22 H 0.96995 * 120.00603 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.00520 * 0.02562 * 13 12 9 24 24 H 1.07993 * 119.99787 * 179.97438 * 14 13 12 25 25 H 1.09002 * 113.25968 * 12.94510 * 16 15 14 26 26 H 1.09004 * 113.47747 * 105.37313 * 17 16 15 27 27 H 1.08995 * 113.53124 * 334.91374 * 17 16 15 28 28 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 29 29 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 30 30 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 31 31 H 1.07999 * 120.00321 * 179.73437 * 20 15 14 32 32 H 1.07999 * 120.00101 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4510 -2.7950 1.2501 12 6 2.3204 -4.0132 0.0005 13 6 2.7898 -4.5204 1.1977 14 6 3.7284 -5.5354 1.1977 15 6 4.1979 -6.0426 0.0005 16 6 5.2214 -7.1486 0.0005 17 6 6.5385 -6.7861 -0.6999 18 7 6.5493 -8.1472 -1.2676 19 6 5.0783 -8.1433 -1.1600 20 6 3.7327 -5.5314 -1.1966 21 6 2.7902 -4.5201 -1.1966 22 1 -0.4851 0.8399 0.0004 23 1 2.4228 -4.1244 2.1329 24 1 4.0954 -5.9313 2.1330 25 1 5.3492 -7.6169 0.9765 26 1 7.3602 -6.5975 -0.0088 27 1 6.4311 -6.0032 -1.4506 28 1 6.8412 -8.1338 -2.2334 29 1 4.5802 -7.7226 -2.0335 30 1 4.6625 -9.1048 -0.8590 31 1 4.1026 -5.9248 -2.1319 32 1 2.4240 -4.1233 -2.1319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687815938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:43 Heat of formation + Delta-G solvation = -30.859594 kcal Electronic energy + Delta-G solvation = -17746.944049 eV Core-core repulsion = 14799.988879 eV Total energy + Delta-G solvation = -2946.955170 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.41573 -38.10875 -35.25776 -33.98705 -33.13658 -31.67018 -30.71561 -27.03968 -26.16375 -26.05127 -22.81902 -22.24370 -19.52969 -18.79938 -17.78533 -16.99788 -16.22235 -15.99016 -15.01801 -14.73718 -14.54640 -14.16083 -13.97606 -13.52329 -13.32366 -13.13722 -12.79821 -12.51735 -12.02816 -11.79747 -11.35458 -11.25653 -11.14386 -10.97165 -10.75365 -10.60304 -10.30656 -10.19341 -9.62514 -9.30146 -9.29651 -8.90019 -8.69959 -8.62806 -6.75262 -5.37985 1.18652 1.63741 2.12302 3.03850 3.12220 3.19689 3.71210 3.92889 4.04942 4.44422 4.52706 4.59695 4.89340 5.06280 5.11902 5.14669 5.20010 5.37707 5.49159 5.52339 5.60914 5.70548 5.74331 5.83856 5.92724 6.03946 6.17868 6.47134 6.50309 6.66279 6.91197 6.96571 7.18515 7.26613 7.90981 8.82916 10.19535 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.005083 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.682144 B = 5507.755357 C = 5827.310660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.132 3.868 3 Si 0.923 3.077 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.270 1.270 7 C -1.001 5.001 8 H 0.105 0.895 9 S 2.604 3.396 10 O -0.985 6.985 11 O -0.985 6.985 12 C -0.642 4.642 13 C -0.024 4.024 14 C -0.139 4.139 15 C -0.046 4.046 16 C -0.079 4.079 17 C 0.010 3.990 18 N -0.631 5.631 19 C 0.006 3.994 20 C -0.146 4.146 21 C -0.024 4.024 22 H 0.292 0.708 23 H 0.141 0.859 24 H 0.125 0.875 25 H 0.110 0.890 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.320 0.680 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.627 -10.190 -1.435 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.086 4.086 3 Si 0.747 3.253 4 H -0.185 1.185 5 H -0.195 1.195 6 H -0.195 1.195 7 C -1.134 5.134 8 H 0.123 0.877 9 S 2.785 3.215 10 O -0.982 6.982 11 O -0.982 6.982 12 C -0.724 4.724 13 C -0.043 4.043 14 C -0.157 4.157 15 C -0.047 4.047 16 C -0.098 4.098 17 C -0.120 4.120 18 N -0.255 5.255 19 C -0.124 4.124 20 C -0.165 4.165 21 C -0.043 4.043 22 H 0.102 0.898 23 H 0.158 0.842 24 H 0.143 0.857 25 H 0.128 0.872 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.139 0.861 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.933 -10.884 -0.843 14.759 hybrid contribution 0.936 1.436 -0.740 1.868 sum 10.869 -9.448 -1.583 14.488 Atomic orbital electron populations 1.69901 1.06750 1.30787 1.39681 1.24775 0.94544 1.00796 0.88497 0.86080 0.80442 0.80108 0.78672 1.18528 1.19491 1.19476 1.30149 1.05955 1.10087 1.67250 0.87691 1.01062 0.73127 0.73965 0.73373 1.93338 1.72308 1.87749 1.44834 1.93339 1.72245 1.87738 1.44845 1.31674 1.21263 1.21106 0.98312 1.21024 0.92616 0.93170 0.97479 1.21089 0.98877 0.98410 0.97372 1.19748 0.95701 0.95508 0.93695 1.21752 0.93700 0.94471 0.99842 1.23673 0.97712 0.91612 0.99044 1.67320 1.11782 1.23822 1.22579 1.23739 0.90579 1.00182 0.97950 1.20999 0.99472 0.98772 0.97240 1.20977 0.92641 0.93164 0.97480 0.89790 0.84156 0.85676 0.87202 0.89496 0.91043 0.86739 0.90876 0.89506 0.86140 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.22 13.19 55.43 0.73 -23.48 16 2 C 0.13 3.60 5.46 -17.82 -0.10 3.50 16 3 Si 0.92 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 7 C -1.00 -27.06 9.58 30.60 0.29 -26.77 16 8 H 0.10 2.61 7.81 -52.49 -0.41 2.20 16 9 S 2.60 68.34 4.65 -107.50 -0.50 67.84 16 10 O -0.99 -28.09 17.16 -57.17 -0.98 -29.07 16 11 O -0.98 -28.10 17.17 -57.17 -0.98 -29.08 16 12 C -0.64 -13.46 5.81 -39.59 -0.23 -13.69 16 13 C -0.02 -0.45 9.52 -39.58 -0.38 -0.83 16 14 C -0.14 -2.09 9.72 -39.58 -0.38 -2.47 16 15 C -0.05 -0.64 5.35 -104.63 -0.56 -1.20 16 16 C -0.08 -0.85 4.31 -91.24 -0.39 -1.25 16 17 C 0.01 0.10 8.10 -7.54 -0.06 0.04 16 18 N -0.63 -6.03 8.71 -122.63 -1.07 -7.10 16 19 C 0.01 0.05 8.02 -7.53 -0.06 -0.01 16 20 C -0.15 -2.16 8.69 -39.58 -0.34 -2.51 16 21 C -0.02 -0.44 9.52 -39.58 -0.38 -0.82 16 22 H 0.29 7.48 8.31 -40.82 -0.34 7.14 16 23 H 0.14 2.52 7.62 -52.49 -0.40 2.12 16 24 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 25 H 0.11 1.12 8.11 -51.93 -0.42 0.70 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.69 7.75 -51.93 -0.40 0.29 16 28 H 0.32 2.52 8.91 -39.29 -0.35 2.17 16 29 H 0.07 0.67 6.22 -51.93 -0.32 0.35 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.12 1.41 6.51 -52.49 -0.34 1.07 16 32 H 0.14 2.49 7.62 -52.49 -0.40 2.09 16 LS Contribution 289.02 15.07 4.36 4.36 Total: -1.00 -33.57 289.02 -9.51 -43.08 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.45 Total: 4.36 kcal Atomic # 6 Polarization: -43.40 SS G_CDS: -2.59 Total: -45.99 kcal Atomic # 7 Polarization: -30.25 SS G_CDS: -0.34 Total: -30.59 kcal Atomic # 8 Polarization: -56.19 SS G_CDS: -1.96 Total: -58.15 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 68.34 SS G_CDS: -0.50 Total: 67.84 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.57 -9.51 -43.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.221 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds