Wall clock time and date at job start Mon Mar 30 2020 04:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 119.99825 * 2 1 4 4 H 1.48503 * 109.46898 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47061 * 299.99631 * 3 2 1 6 6 H 1.48492 * 109.47166 * 59.99909 * 3 2 1 7 7 C 1.37881 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99995 * 180.02562 * 7 2 1 9 9 S 1.76194 * 119.99873 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.40444 * 66.45879 * 9 7 2 11 11 O 1.42105 * 106.40480 * 293.53927 * 9 7 2 12 12 C 1.76203 * 107.21848 * 179.97438 * 9 7 2 13 13 C 1.38230 * 119.99753 * 90.00052 * 12 9 7 14 14 C 1.38242 * 119.99794 * 179.97438 * 13 12 9 15 15 C 1.38234 * 119.99903 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00110 * 179.97438 * 15 14 13 17 17 C 1.53515 * 114.16962 * 239.99774 * 16 15 14 18 18 N 1.47481 * 87.93334 * 220.13408 * 17 16 15 19 19 C 1.47488 * 87.83530 * 27.00963 * 18 17 16 20 20 C 1.38232 * 120.00045 * 0.25006 * 15 14 13 21 21 C 1.38235 * 119.99788 * 270.02139 * 12 9 7 22 22 H 0.96995 * 120.00603 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.00520 * 0.02562 * 13 12 9 24 24 H 1.07993 * 119.99787 * 179.97438 * 14 13 12 25 25 H 1.09002 * 113.25968 * 12.94510 * 16 15 14 26 26 H 1.09004 * 113.47747 * 105.37313 * 17 16 15 27 27 H 1.08995 * 113.53124 * 334.91374 * 17 16 15 28 28 H 1.00901 * 110.99857 * 138.69928 * 18 17 16 29 29 H 1.08996 * 113.47304 * 87.75121 * 19 18 17 30 30 H 1.08997 * 113.47652 * 218.22256 * 19 18 17 31 31 H 1.07999 * 120.00321 * 179.73437 * 20 15 14 32 32 H 1.07999 * 120.00101 * 0.02562 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4519 -2.7956 -1.2495 11 8 0.4510 -2.7950 1.2501 12 6 2.3204 -4.0132 0.0005 13 6 2.7898 -4.5204 1.1977 14 6 3.7284 -5.5354 1.1977 15 6 4.1979 -6.0426 0.0005 16 6 5.2214 -7.1486 0.0005 17 6 6.5385 -6.7861 -0.6999 18 7 6.5493 -8.1472 -1.2676 19 6 5.0783 -8.1433 -1.1600 20 6 3.7327 -5.5314 -1.1966 21 6 2.7902 -4.5201 -1.1966 22 1 -0.4851 0.8399 0.0004 23 1 2.4228 -4.1244 2.1329 24 1 4.0954 -5.9313 2.1330 25 1 5.3492 -7.6169 0.9765 26 1 7.3602 -6.5975 -0.0088 27 1 6.4311 -6.0032 -1.4506 28 1 6.8412 -8.1338 -2.2334 29 1 4.5802 -7.7226 -2.0335 30 1 4.6625 -9.1048 -0.8590 31 1 4.1026 -5.9248 -2.1319 32 1 2.4240 -4.1233 -2.1319 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687815938.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:43 Heat of formation + Delta-G solvation = -58.147138 kcal Electronic energy + Delta-G solvation = -17748.127326 eV Core-core repulsion = 14799.988879 eV Total energy + Delta-G solvation = -2948.138447 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.36014 -39.26184 -37.39247 -36.12549 -35.20462 -32.89870 -32.03086 -28.33917 -27.97578 -26.77096 -24.05832 -23.53740 -20.85650 -20.35322 -19.34247 -18.56592 -17.82020 -16.99582 -16.90371 -16.12366 -15.87888 -15.77833 -15.34858 -14.96825 -14.67480 -14.40503 -14.05496 -13.76699 -13.49194 -13.30348 -13.02388 -12.81025 -12.49166 -12.45989 -12.35386 -12.27354 -11.90911 -11.77699 -11.36404 -11.27130 -10.86123 -10.02180 -10.01338 -9.97906 -8.78014 -7.52235 -0.19821 0.18753 0.32570 1.34150 1.34681 1.53132 2.20232 2.44712 2.56106 3.16881 3.42372 3.54744 3.66045 3.75189 3.78891 3.97956 4.09228 4.26288 4.34321 4.37566 4.45489 4.73173 4.74434 4.80155 4.85772 4.95512 5.04316 5.07384 5.18856 5.24272 5.28546 5.47995 5.85322 5.88748 6.27441 6.74147 8.19844 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.005083 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.682144 B = 5507.755357 C = 5827.310660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.994 3.006 4 H -0.247 1.247 5 H -0.256 1.256 6 H -0.257 1.257 7 C -1.022 5.022 8 H 0.120 0.880 9 S 2.594 3.406 10 O -1.026 7.026 11 O -1.026 7.026 12 C -0.660 4.660 13 C -0.043 4.043 14 C -0.131 4.131 15 C -0.028 4.028 16 C -0.081 4.081 17 C 0.013 3.987 18 N -0.636 5.636 19 C 0.008 3.992 20 C -0.135 4.135 21 C -0.042 4.042 22 H 0.301 0.699 23 H 0.134 0.866 24 H 0.162 0.838 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.332 0.668 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.823 -11.324 -1.636 17.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.144 4.144 3 Si 0.812 3.188 4 H -0.170 1.170 5 H -0.181 1.181 6 H -0.181 1.181 7 C -1.155 5.155 8 H 0.138 0.862 9 S 2.783 3.217 10 O -1.023 7.023 11 O -1.023 7.023 12 C -0.748 4.748 13 C -0.062 4.062 14 C -0.149 4.149 15 C -0.028 4.028 16 C -0.100 4.100 17 C -0.118 4.118 18 N -0.261 5.261 19 C -0.123 4.123 20 C -0.153 4.153 21 C -0.061 4.061 22 H 0.111 0.889 23 H 0.152 0.848 24 H 0.180 0.820 25 H 0.141 0.859 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.145 0.855 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.175 0.825 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 13.078 -11.989 -1.050 17.772 hybrid contribution 0.051 1.583 -0.686 1.726 sum 13.128 -10.406 -1.736 16.842 Atomic orbital electron populations 1.69995 1.08768 1.32446 1.40961 1.26081 0.95469 1.05343 0.87474 0.85047 0.79422 0.74746 0.79617 1.17024 1.18062 1.18090 1.30517 1.06835 1.10996 1.67196 0.86209 1.00589 0.74081 0.74972 0.72036 1.93271 1.74498 1.88660 1.45858 1.93272 1.74456 1.88655 1.45898 1.30715 1.22242 1.21175 1.00708 1.21139 0.94042 0.94720 0.96293 1.21462 0.97135 0.96686 0.99651 1.20166 0.94840 0.95061 0.92757 1.21865 0.93183 0.93695 1.01255 1.23673 0.97055 0.91910 0.99115 1.67308 1.11632 1.23551 1.23626 1.23761 0.90854 1.00117 0.97521 1.21329 0.97625 0.96962 0.99425 1.21094 0.94049 0.94693 0.96272 0.88920 0.84765 0.82021 0.85924 0.88884 0.90687 0.85487 0.90178 0.88937 0.82511 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.20 13.19 21.45 0.28 -52.92 16 2 C 0.07 3.85 5.46 84.66 0.46 4.31 16 3 Si 0.99 41.01 29.54 68.60 2.03 43.04 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 7 C -1.02 -57.00 9.58 67.74 0.65 -56.35 16 8 H 0.12 6.05 7.81 -2.91 -0.02 6.03 16 9 S 2.59 143.54 4.65 -56.49 -0.26 143.28 16 10 O -1.03 -62.07 17.16 -128.00 -2.20 -64.26 16 11 O -1.03 -62.19 17.17 -128.00 -2.20 -64.39 16 12 C -0.66 -28.31 5.81 22.27 0.13 -28.18 16 13 C -0.04 -1.59 9.52 22.27 0.21 -1.38 16 14 C -0.13 -3.58 9.72 22.27 0.22 -3.36 16 15 C -0.03 -0.67 5.35 -19.87 -0.11 -0.77 16 16 C -0.08 -1.40 4.31 -11.20 -0.05 -1.45 16 17 C 0.01 0.19 8.10 83.58 0.68 0.87 16 18 N -0.64 -9.53 8.71 -541.89 -4.72 -14.26 16 19 C 0.01 0.11 8.02 83.58 0.67 0.78 16 20 C -0.13 -3.62 8.69 22.27 0.19 -3.42 16 21 C -0.04 -1.54 9.52 22.27 0.21 -1.33 16 22 H 0.30 15.96 8.31 -92.71 -0.77 15.19 16 23 H 0.13 4.98 7.62 -2.91 -0.02 4.95 16 24 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 25 H 0.12 1.89 8.11 -2.39 -0.02 1.87 16 26 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.12 7.75 -2.39 -0.02 1.10 16 28 H 0.33 3.91 8.91 -89.69 -0.80 3.11 16 29 H 0.08 1.10 6.22 -2.39 -0.01 1.09 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.16 3.03 6.51 -2.91 -0.02 3.01 16 32 H 0.13 4.92 7.62 -2.91 -0.02 4.90 16 Total: -1.00 -76.54 289.02 -3.45 -80.00 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.35 Total: 19.81 kcal Atomic # 6 Polarization: -93.56 SS G_CDS: 3.27 Total: -90.29 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -4.44 Total: -67.17 kcal Atomic # 8 Polarization: -124.26 SS G_CDS: -4.39 Total: -128.66 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 16 Polarization: 143.54 SS G_CDS: -0.26 Total: 143.28 kcal Total: -76.54 -3.45 -80.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687815938.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.848 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds