Wall clock time and date at job start Mon Mar 30 2020 04:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46768 * 101.95417 * 3 2 1 5 5 C 1.32861 * 120.00418 * 89.17378 * 4 3 2 6 6 H 1.07998 * 120.00144 * 165.13542 * 5 4 3 7 7 C 1.46829 * 120.00134 * 345.41330 * 5 4 3 8 8 N 1.29304 * 119.99428 * 334.76082 * 7 5 4 9 9 Si 1.86791 * 120.00248 * 154.75859 * 7 5 4 10 10 H 1.48500 * 109.47351 * 90.00269 * 9 7 5 11 11 H 1.48506 * 109.47343 * 209.99901 * 9 7 5 12 12 H 1.48502 * 109.47401 * 329.99910 * 9 7 5 13 13 C 1.38898 * 119.99798 * 269.17323 * 4 3 2 14 14 N 1.32940 * 120.51094 * 89.02890 * 13 4 3 15 15 C 1.31947 * 120.68642 * 179.97438 * 14 13 4 16 16 F 1.35091 * 119.11364 * 179.97438 * 15 14 13 17 17 N 1.32094 * 121.77647 * 359.97438 * 15 14 13 18 18 C 1.32415 * 120.97072 * 0.02562 * 17 15 14 19 19 C 1.38339 * 119.21111 * 359.74027 * 18 17 15 20 20 N 1.48014 * 120.80909 * 180.28019 * 19 18 17 21 21 O 1.31697 * 120.00345 * 5.84152 * 20 19 18 22 22 O 1.31703 * 119.99531 * 185.84311 * 20 19 18 23 23 H 1.09002 * 109.47236 * 341.95208 * 3 2 1 24 24 H 1.09000 * 109.46878 * 221.95037 * 3 2 1 25 25 H 0.97002 * 120.00035 * 179.97438 * 8 7 5 26 26 H 1.07999 * 120.39307 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0961 0.2870 -1.3513 5 6 3.3014 1.5435 -1.7312 6 1 3.8782 1.7514 -2.6203 7 6 2.7492 2.6495 -0.9391 8 7 1.7053 2.4575 -0.2005 9 14 3.5546 4.3338 -0.9981 10 1 2.9430 5.1371 -2.0871 11 1 3.3521 5.0252 0.3005 12 1 5.0090 4.1784 -1.2546 13 6 3.3444 -0.7552 -2.2353 14 7 2.3800 -1.2120 -3.0281 15 6 2.6121 -2.2015 -3.8695 16 9 1.6088 -2.6411 -4.6601 17 7 3.7992 -2.7739 -3.9597 18 6 4.8085 -2.3727 -3.2022 19 6 4.6114 -1.3347 -2.3092 20 7 5.7164 -0.8538 -1.4499 21 8 6.9319 -1.3349 -1.6095 22 8 5.4840 0.0551 -0.5256 23 1 2.9718 -0.9763 0.3184 24 1 2.9710 0.7651 0.6870 25 1 1.3406 3.1881 0.3232 26 1 5.7753 -2.8470 -3.2840 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000689034791.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:23 Heat of formation + Delta-G solvation = 81.540605 kcal Electronic energy + Delta-G solvation = -20126.976618 eV Core-core repulsion = 16547.434718 eV Total energy + Delta-G solvation = -3579.541900 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.055 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.39330 -42.09801 -40.17935 -37.44234 -37.18270 -36.59015 -33.95674 -32.95467 -31.71983 -31.11819 -28.07367 -26.30968 -24.52842 -23.11268 -21.91781 -20.35408 -19.56186 -18.84420 -18.07393 -17.79901 -17.51831 -17.04556 -16.83838 -16.31229 -15.65669 -15.19874 -15.05561 -14.93996 -14.48999 -14.31401 -14.28125 -13.93573 -13.80173 -13.57250 -12.97161 -12.87903 -12.43250 -12.13768 -11.65427 -11.60556 -10.72485 -10.27176 -10.26255 -10.07620 -10.04831 -10.03243 -6.22552 -1.39149 0.13393 0.34570 0.69336 0.74957 0.92085 1.55034 1.63027 1.78864 1.85966 2.06979 2.28123 2.38681 2.56765 2.86276 2.94158 3.23209 3.59611 3.82280 4.00352 4.11813 4.31927 4.70548 4.83303 5.04480 5.31933 6.01346 6.15273 6.25806 6.30886 7.18588 7.33641 8.21987 Molecular weight = 267.06amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.009108 C = 0.007225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.464419 B = 3073.414837 C = 3874.293425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C 0.234 3.766 3 C 0.186 3.814 4 N -0.266 5.266 5 C 0.360 3.640 6 H 0.231 0.769 7 C -0.048 4.048 8 N -0.582 5.582 9 Si 1.041 2.959 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.245 1.245 13 C 0.054 3.946 14 N -0.435 5.435 15 C 0.227 3.773 16 F -0.119 7.119 17 N -0.500 5.500 18 C 0.157 3.843 19 C -0.079 4.079 20 N -0.009 5.009 21 O -0.622 6.622 22 O -0.579 6.579 23 H 0.130 0.870 24 H 0.176 0.824 25 H 0.385 0.615 26 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 17.685 3.845 20.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.085 4.085 3 C 0.063 3.937 4 N 0.077 4.923 5 C 0.172 3.828 6 H 0.247 0.753 7 C -0.287 4.287 8 N -0.204 5.204 9 Si 0.848 3.152 10 H -0.133 1.133 11 H -0.140 1.140 12 H -0.168 1.168 13 C -0.181 4.181 14 N -0.153 5.153 15 C -0.045 4.045 16 F -0.100 7.100 17 N -0.223 5.223 18 C -0.033 4.033 19 C -0.221 4.221 20 N 0.302 4.698 21 O -0.697 6.697 22 O -0.659 6.659 23 H 0.148 0.852 24 H 0.193 0.807 25 H 0.208 0.792 26 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.269 17.124 3.939 20.874 hybrid contribution 1.328 -0.248 0.604 1.480 sum -9.940 16.876 4.542 20.105 Atomic orbital electron populations 1.81114 1.12786 1.10625 1.05729 1.28177 0.93921 0.91707 0.94677 1.20082 0.81959 1.09272 0.82382 1.43342 1.32661 1.05682 1.10588 1.28101 0.77306 0.82306 0.95055 0.75317 1.30408 0.97816 1.06344 0.94086 1.68695 1.07980 1.43021 1.00745 0.84345 0.79993 0.66594 0.84315 1.13274 1.13952 1.16782 1.15232 0.89511 1.05846 1.07548 1.65951 1.34425 1.11239 1.03734 1.16983 0.84802 1.00667 1.02087 1.91437 1.57738 1.88746 1.72072 1.67255 0.99667 1.30357 1.25053 1.21587 0.96286 0.93958 0.91432 1.20118 0.87229 1.08124 1.06652 1.47483 1.00342 1.12130 1.09828 1.95798 1.07878 1.76393 1.89661 1.95543 1.91862 1.39619 1.38843 0.85197 0.80718 0.79192 0.82637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.41 18.54 20.01 0.37 -13.04 15 2 C 0.23 6.63 13.11 89.44 1.17 7.80 15 3 C 0.19 5.19 4.59 84.57 0.39 5.57 15 4 N -0.27 -8.74 1.15 -522.17 -0.60 -9.34 15 5 C 0.36 8.01 8.95 86.79 0.78 8.79 15 6 H 0.23 3.96 8.02 -2.91 -0.02 3.94 15 7 C -0.05 -0.59 4.95 87.31 0.43 -0.16 15 8 N -0.58 -7.49 9.32 23.27 0.22 -7.27 15 9 Si 1.04 6.08 29.70 68.60 2.04 8.12 15 10 H -0.21 -0.78 7.11 99.48 0.71 -0.08 15 11 H -0.22 -0.85 7.11 99.48 0.71 -0.14 15 12 H -0.25 -2.76 7.11 99.48 0.71 -2.05 15 13 C 0.05 2.39 6.05 133.03 0.80 3.19 15 14 N -0.43 -20.13 10.48 -198.57 -2.08 -22.21 15 15 C 0.23 11.33 9.46 180.75 1.71 13.04 15 16 F -0.12 -5.71 17.32 44.97 0.78 -4.93 15 17 N -0.50 -25.75 10.44 -201.35 -2.10 -27.86 15 18 C 0.16 8.37 10.84 84.63 0.92 9.28 15 19 C -0.08 -4.21 6.95 36.71 0.25 -3.95 15 20 N -0.01 -0.56 4.98 -45.68 -0.23 -0.79 15 21 O -0.62 -44.50 19.27 3.52 0.07 -44.44 15 22 O -0.58 -32.90 16.57 3.51 0.06 -32.85 15 23 H 0.13 4.12 8.04 -2.39 -0.02 4.10 15 24 H 0.18 3.58 6.77 -2.39 -0.02 3.56 15 25 H 0.39 2.32 8.26 -92.71 -0.77 1.55 15 26 H 0.16 8.30 7.69 -2.91 -0.02 8.28 15 Total: -1.00 -98.10 262.76 6.25 -91.85 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.27 Total: 19.16 kcal Atomic # 6 Polarization: 37.12 SS G_CDS: 6.46 Total: 43.57 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -4.42 Total: -80.50 kcal Atomic # 8 Polarization: -77.41 SS G_CDS: 0.13 Total: -77.28 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.93 kcal Atomic # 14 Polarization: 6.08 SS G_CDS: 2.04 Total: 8.12 kcal Total: -98.10 6.25 -91.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000689034791.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.392 kcal (2) G-P(sol) polarization free energy of solvation -98.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds