Wall clock time and date at job start Mon Mar 30 2020 05:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81403 * 109.46875 * 2 1 4 4 O 1.42092 * 109.46990 * 70.95096 * 3 2 1 5 5 N 1.65608 * 102.99617 * 180.02562 * 3 2 1 6 6 C 1.29444 * 119.99550 * 179.97438 * 5 3 2 7 7 C 1.47365 * 119.99688 * 179.97438 * 6 5 3 8 8 C 1.39682 * 120.20063 * 179.97438 * 7 6 5 9 9 C 1.37851 * 119.91415 * 180.02562 * 8 7 6 10 10 C 1.38551 * 120.32177 * 0.02562 * 9 8 7 11 11 C 1.38061 * 120.40581 * 359.70466 * 10 9 8 12 12 C 1.38791 * 120.07835 * 0.55413 * 11 10 9 13 13 O 1.35547 * 120.16074 * 179.74498 * 12 11 10 14 14 C 1.34810 * 117.00232 * 5.59571 * 13 12 11 15 15 H 1.07997 * 119.99723 * 354.93624 * 14 13 12 16 16 C 1.38685 * 119.99998 * 174.66298 * 14 13 12 17 17 N 1.31523 * 120.00459 * 0.27466 * 16 14 13 18 18 Si 1.86809 * 119.99867 * 180.27741 * 16 14 13 19 19 H 1.48496 * 109.47052 * 59.99512 * 18 16 14 20 20 H 1.48496 * 109.47105 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46687 * 299.99931 * 18 16 14 22 22 H 1.09007 * 109.46557 * 299.99784 * 1 2 3 23 23 H 1.08994 * 109.47337 * 59.99433 * 1 2 3 24 24 H 1.08997 * 109.47257 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46653 * 240.00721 * 2 1 3 26 26 H 1.08994 * 109.47337 * 120.00566 * 2 1 3 27 27 H 1.07997 * 120.00595 * 0.02562 * 6 5 3 28 28 H 1.08000 * 120.03869 * 359.97438 * 8 7 6 29 29 H 1.07995 * 119.83628 * 180.02562 * 9 8 7 30 30 H 1.08003 * 119.79318 * 179.97438 * 10 9 8 31 31 H 1.08005 * 119.95865 * 180.29601 * 11 10 9 32 32 H 0.96999 * 120.00114 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8802 2.3026 1.2663 5 7 3.7802 1.5236 -0.0007 6 6 4.5495 2.5646 -0.0014 7 6 6.0138 2.3985 -0.0015 8 6 6.8480 3.5189 -0.0027 9 6 8.2170 3.3566 -0.0033 10 6 8.7709 2.0867 -0.0032 11 6 7.9588 0.9702 0.0036 12 6 6.5784 1.1140 -0.0011 13 8 5.7795 0.0190 0.0003 14 6 6.3842 -1.1796 0.1237 15 1 7.4623 -1.2420 0.1332 16 6 5.6217 -2.3318 0.2440 17 7 4.3088 -2.2558 0.2323 18 14 6.4597 -3.9918 0.4227 19 1 7.3041 -3.9911 1.6442 20 1 5.4304 -5.0564 0.5335 21 1 7.3107 -4.2473 -0.7672 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 4.1185 3.5548 -0.0011 28 1 6.4210 4.5109 -0.0041 29 1 8.8608 4.2237 -0.0039 30 1 9.8445 1.9695 -0.0041 31 1 8.3983 -0.0164 0.0085 32 1 3.7755 -3.0617 0.3168 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692033161.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:21 Heat of formation + Delta-G solvation = -10.840359 kcal Electronic energy + Delta-G solvation = -17891.574916 eV Core-core repulsion = 14945.487845 eV Total energy + Delta-G solvation = -2946.087071 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 267.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.08914 -36.44162 -35.19694 -34.60670 -32.36081 -32.15308 -30.16506 -28.80430 -25.45786 -23.86201 -22.73190 -21.60932 -19.99552 -17.99795 -17.36965 -16.69790 -15.97722 -15.08359 -14.61189 -14.47381 -14.40139 -14.08316 -13.70253 -13.54887 -12.95820 -12.67903 -12.50532 -12.11566 -11.74588 -11.56428 -11.52069 -11.00878 -10.93982 -10.87445 -10.73812 -10.67541 -10.50096 -10.08211 -9.50841 -8.91420 -8.89153 -8.13162 -7.40107 -7.08573 -6.51219 -4.05607 1.43648 2.37399 2.49406 3.01813 3.08010 3.10453 3.11413 3.38342 3.89980 4.52605 4.70297 5.04265 5.15816 5.24379 5.53348 5.58152 5.60211 5.67329 5.77116 5.89901 6.16562 6.23620 6.29361 6.39443 6.62691 6.76604 6.83516 6.96699 7.11538 7.27508 7.30040 7.74456 7.86920 8.01230 8.91467 9.67194 10.62381 Molecular weight = 267.07amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.009910 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.364283 B = 2824.863488 C = 5062.015788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.426 4.426 3 S 1.370 4.630 4 O -0.913 6.913 5 N -0.765 5.765 6 C 0.295 3.705 7 C -0.184 4.184 8 C -0.033 4.033 9 C -0.230 4.230 10 C -0.053 4.053 11 C -0.240 4.240 12 C 0.184 3.816 13 O -0.107 6.107 14 C -0.399 4.399 15 H 0.091 0.909 16 C 0.047 3.953 17 N -0.830 5.830 18 Si 0.937 3.063 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.049 0.951 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.118 0.882 26 H 0.095 0.905 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.128 0.872 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 6.599 -5.540 8.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.564 4.564 3 S 1.478 4.522 4 O -0.898 6.898 5 N -0.586 5.586 6 C 0.091 3.909 7 C -0.191 4.191 8 C -0.054 4.054 9 C -0.249 4.249 10 C -0.072 4.072 11 C -0.259 4.259 12 C 0.123 3.877 13 O -0.003 6.003 14 C -0.476 4.476 15 H 0.108 0.892 16 C -0.160 4.160 17 N -0.462 5.462 18 Si 0.761 3.239 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.068 0.932 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.136 0.864 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.146 0.854 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.674 6.242 -5.452 8.455 hybrid contribution 0.941 -1.516 1.856 2.574 sum -0.733 4.726 -3.596 5.984 Atomic orbital electron populations 1.21341 0.93639 1.02361 1.01306 1.27283 1.00639 1.19133 1.09386 1.67349 0.85797 0.89173 1.09907 1.93111 1.82625 1.68513 1.45546 1.72381 1.22006 1.40522 1.23712 1.23281 0.92287 0.91537 0.83834 1.18120 0.90995 0.91175 1.18829 1.20805 0.93202 0.96296 0.95056 1.20462 0.94443 0.96560 1.13428 1.20893 0.98480 0.92478 0.95366 1.21185 0.93334 0.99438 1.11979 1.19424 0.89278 0.88025 0.90929 1.84244 1.32312 1.11250 1.72487 1.21490 0.92574 0.81638 1.51866 0.89198 1.25279 0.95505 0.99024 0.96231 1.70068 1.03996 1.29466 1.42624 0.85849 0.78710 0.80056 0.79239 1.19569 1.20295 1.19407 0.93151 0.92212 0.92064 0.86366 0.88647 0.89694 0.86483 0.87296 0.87380 0.85393 0.92086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 9.92 37.16 0.37 -1.53 16 2 C -0.43 -8.10 6.83 37.16 0.25 -7.85 16 3 S 1.37 25.39 13.81 -107.50 -1.48 23.90 16 4 O -0.91 -21.93 17.92 -35.23 -0.63 -22.56 16 5 N -0.76 -17.11 8.56 32.08 0.27 -16.84 16 6 C 0.30 5.87 10.32 -14.85 -0.15 5.72 16 7 C -0.18 -3.80 5.88 -104.87 -0.62 -4.41 16 8 C -0.03 -0.55 9.78 -39.18 -0.38 -0.93 16 9 C -0.23 -3.70 10.03 -39.61 -0.40 -4.10 16 10 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 11 C -0.24 -5.03 9.16 -39.44 -0.36 -5.39 16 12 C 0.18 4.36 6.66 -38.60 -0.26 4.10 16 13 O -0.11 -2.93 7.64 0.73 0.01 -2.92 16 14 C -0.40 -10.76 9.49 30.90 0.29 -10.46 16 15 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16 16 C 0.05 1.25 5.49 -17.52 -0.10 1.15 16 17 N -0.83 -22.94 13.67 55.48 0.76 -22.18 16 18 Si 0.94 20.01 29.55 -169.99 -5.02 14.98 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.12 2.26 8.14 -51.92 -0.42 1.84 16 26 H 0.09 2.23 8.14 -51.93 -0.42 1.81 16 27 H 0.09 1.34 7.99 -52.49 -0.42 0.92 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.13 2.66 5.64 -52.48 -0.30 2.37 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 298.09 15.07 4.49 4.49 Total: -1.00 -35.39 298.09 -6.86 -42.25 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -3.51 Total: 3.89 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: -1.75 Total: -25.02 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 1.03 Total: -39.02 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.63 Total: -25.48 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 25.39 SS G_CDS: -1.48 Total: 23.90 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -35.39 -6.86 -42.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692033161.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.408 kcal (2) G-P(sol) polarization free energy of solvation -35.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds